RNA–Protein interactions for RNA: ENST00000370966.9

DEPDC1-201, Transcript of DEP domain containing 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene DEPDC1, Length 4,586 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC1-201ENST00000370966 SOGA1O94964 1423 aa15.95■□□□□ 0.14
DEPDC1-201ENST00000370966 STAG3Q9UJ98 1225 aa15.94■□□□□ 0.14
DEPDC1-201ENST00000370966 FHAD1B1AJZ9 1412 aa15.94■□□□□ 0.14
DEPDC1-201ENST00000370966 HIRIP3Q9BW71 556 aaPredicted RBP15.94■□□□□ 0.14
DEPDC1-201ENST00000370966 CCDC136Q96JN2 1154 aa15.93■□□□□ 0.14
DEPDC1-201ENST00000370966 GOLGA6L2Q8N9W4 650 aaPredicted RBP15.92■□□□□ 0.14
DEPDC1-201ENST00000370966 CCNB3Q8WWL7 1395 aa15.9■□□□□ 0.14
DEPDC1-201ENST00000370966 CCDC88BA6NC98 1476 aa15.9■□□□□ 0.14
DEPDC1-201ENST00000370966 NPM2Q86SE8 214 aaKnown RBP15.9■□□□□ 0.14
DEPDC1-201ENST00000370966 CFDP1Q9UEE9 299 aaPredicted RBP15.9■□□□□ 0.14
DEPDC1-201ENST00000370966 WDR43Q15061 677 aaKnown RBP eCLIP15.89■□□□□ 0.13
DEPDC1-201ENST00000370966 SLC24A1O60721 1099 aa15.89■□□□□ 0.13
DEPDC1-201ENST00000370966 SALL2Q9Y467 1007 aaPredicted RBP15.89■□□□□ 0.13
DEPDC1-201ENST00000370966 CARMIL1Q5VZK9 1371 aa15.89■□□□□ 0.13
DEPDC1-201ENST00000370966 TIMELESSQ9UNS1 1208 aa15.88■□□□□ 0.13
DEPDC1-201ENST00000370966 VPS8Q8N3P4 1428 aa15.88■□□□□ 0.13
DEPDC1-201ENST00000370966 UPF2Q9HAU5 1272 aaKnown RBP15.85■□□□□ 0.13
DEPDC1-201ENST00000370966 CUX2O14529 1486 aa15.84■□□□□ 0.13
DEPDC1-201ENST00000370966 BCL11AQ9H165 835 aa15.83■□□□□ 0.12
DEPDC1-201ENST00000370966 SMARCA2P51531 1590 aa15.81■□□□□ 0.12
DEPDC1-201ENST00000370966 SIN3AQ96ST3 1273 aa15.8■□□□□ 0.12
DEPDC1-201ENST00000370966 KCNH8Q96L42 1107 aa15.79■□□□□ 0.12
DEPDC1-201ENST00000370966 ABCC8Q09428 1581 aa15.77■□□□□ 0.12
DEPDC1-201ENST00000370966 CDCA8Q53HL2 280 aa15.77■□□□□ 0.12
DEPDC1-201ENST00000370966 TOP2AP11388 1531 aaKnown RBP15.76■□□□□ 0.11
DEPDC1-201ENST00000370966 RGL3Q3MIN7 710 aa15.75■□□□□ 0.11
DEPDC1-201ENST00000370966 CARD11Q9BXL7 1154 aa15.74■□□□□ 0.11
DEPDC1-201ENST00000370966 IRX6P78412 446 aaPredicted RBP15.73■□□□□ 0.11
DEPDC1-201ENST00000370966 HSP90AA1P07900 732 aaKnown RBP15.72■□□□□ 0.11
DEPDC1-201ENST00000370966 SETD5Q9C0A6 1442 aa15.72■□□□□ 0.11
DEPDC1-201ENST00000370966 KANK4Q5T7N3 995 aaPredicted RBP15.68■□□□□ 0.1
DEPDC1-201ENST00000370966 KNSTRNQ9Y448 316 aa15.68■□□□□ 0.1
DEPDC1-201ENST00000370966 WIZO95785 1651 aa15.68■□□□□ 0.1
DEPDC1-201ENST00000370966 ARHGAP35Q9NRY4 1499 aa15.67■□□□□ 0.1
DEPDC1-201ENST00000370966 SUPT16HQ9Y5B9 1047 aaKnown RBP15.66■□□□□ 0.1
DEPDC1-201ENST00000370966 ANP32BQ92688 251 aaKnown RBP15.65■□□□□ 0.1
DEPDC1-201ENST00000370966 ERCC6Q03468 1493 aa15.65■□□□□ 0.1
DEPDC1-201ENST00000370966 CCER2I3L3R5 266 aa15.65■□□□□ 0.1
DEPDC1-201ENST00000370966 FMN1Q68DA7 1419 aa15.64■□□□□ 0.09
DEPDC1-201ENST00000370966 CFAP53Q96M91 514 aa15.63■□□□□ 0.09
DEPDC1-201ENST00000370966 PDS5BQ9NTI5 1447 aa15.62■□□□□ 0.09
DEPDC1-201ENST00000370966 EIF4G1Q04637 1599 aaKnown RBP15.61■□□□□ 0.09
DEPDC1-201ENST00000370966 PPP4R2Q9NY27 417 aa15.6■□□□□ 0.09
DEPDC1-201ENST00000370966 RAB3GAP2Q9H2M9 1393 aa15.58■□□□□ 0.09
DEPDC1-201ENST00000370966 PPP1R15AO75807 674 aaPredicted RBP15.58■□□□□ 0.08
DEPDC1-201ENST00000370966 CADPSQ9ULU8 1353 aa15.58■□□□□ 0.08
DEPDC1-201ENST00000370966 MYH16Q9H6N6 1097 aa15.58■□□□□ 0.08
DEPDC1-201ENST00000370966 DDRGK1Q96HY6 314 aa15.57■□□□□ 0.08
DEPDC1-201ENST00000370966 ATAD2BQ9ULI0 1458 aa15.57■□□□□ 0.08
DEPDC1-201ENST00000370966 NBR1Q14596 966 aa15.57■□□□□ 0.08
DEPDC1-201ENST00000370966 PLPPR3Q6T4P5 718 aa15.55■□□□□ 0.08
DEPDC1-201ENST00000370966 RAPGEF2Q9Y4G8 1499 aa15.55■□□□□ 0.08
DEPDC1-201ENST00000370966 TDRD9Q8NDG6 1382 aaKnown RBP15.54■□□□□ 0.08
DEPDC1-201ENST00000370966 DCAF11Q8TEB1 546 aa15.54■□□□□ 0.08
DEPDC1-201ENST00000370966 CARMIL2Q6F5E8 1435 aa15.53■□□□□ 0.08
DEPDC1-201ENST00000370966 SMARCA4P51532 1647 aa15.53■□□□□ 0.08
DEPDC1-201ENST00000370966 TMF1P82094 1093 aa15.53■□□□□ 0.08
DEPDC1-201ENST00000370966 BECN1Q14457 450 aa15.52■□□□□ 0.07
DEPDC1-201ENST00000370966 HSPA5P11021 654 aaKnown RBP15.51■□□□□ 0.07
DEPDC1-201ENST00000370966 NUDCQ9Y266 331 aa15.5■□□□□ 0.07
DEPDC1-201ENST00000370966 PKD2Q13563 968 aa15.49■□□□□ 0.07
DEPDC1-201ENST00000370966 MPHOSPH9Q99550 1183 aa15.49■□□□□ 0.07
DEPDC1-201ENST00000370966 KANK1Q14678 1352 aa15.48■□□□□ 0.07
DEPDC1-201ENST00000370966 EIF5BO60841 1220 aaKnown RBP15.47■□□□□ 0.07
DEPDC1-201ENST00000370966 ANP32EQ9BTT0 268 aa15.46■□□□□ 0.07
DEPDC1-201ENST00000370966 SENP3-EIF4A1A0A087X0R7 540 aa15.45■□□□□ 0.06
DEPDC1-201ENST00000370966 MAPK8IP3Q9UPT6 1336 aa15.44■□□□□ 0.06
DEPDC1-201ENST00000370966 CC2D1BQ5T0F9 858 aaKnown RBP15.44■□□□□ 0.06
DEPDC1-201ENST00000370966 ERICH6BQ5W0A0 696 aa15.44■□□□□ 0.06
DEPDC1-201ENST00000370966 ANKRD30AQ9BXX3 1397 aa15.44■□□□□ 0.06
DEPDC1-201ENST00000370966 POGKQ9P215 609 aa15.43■□□□□ 0.06
DEPDC1-201ENST00000370966 FHOD3Q2V2M9 1422 aa15.43■□□□□ 0.06
DEPDC1-201ENST00000370966 FTSJ3Q8IY81 847 aaKnown RBP15.43■□□□□ 0.06
DEPDC1-201ENST00000370966 RUSC2Q8N2Y8 1516 aa15.42■□□□□ 0.06
DEPDC1-201ENST00000370966 NEUROD2Q15784 382 aa15.41■□□□□ 0.06
DEPDC1-201ENST00000370966 PPM1GO15355 546 aaPredicted RBP15.41■□□□□ 0.06
DEPDC1-201ENST00000370966 MS4A1P11836 297 aa15.41■□□□□ 0.06
DEPDC1-201ENST00000370966 SENP3Q9H4L4 574 aaPredicted RBP15.41■□□□□ 0.06
DEPDC1-201ENST00000370966 NUP155O75694 1391 aa15.41■□□□□ 0.06
DEPDC1-201ENST00000370966 FOXD1Q16676 465 aa15.4■□□□□ 0.06
DEPDC1-201ENST00000370966 RSPH4AQ5TD94 716 aa15.39■□□□□ 0.06
DEPDC1-201ENST00000370966 CHMP4BQ9H444 224 aaKnown RBP15.39■□□□□ 0.06
DEPDC1-201ENST00000370966 EFCAB2Q5VUJ9 269 aa15.39■□□□□ 0.05
DEPDC1-201ENST00000370966 B4GALNT3Q6L9W6 998 aa15.39■□□□□ 0.05
DEPDC1-201ENST00000370966 DHX57Q6P158 1386 aaKnown RBP15.38■□□□□ 0.05
DEPDC1-201ENST00000370966 PNNQ9H307 717 aaKnown RBP15.38■□□□□ 0.05
DEPDC1-201ENST00000370966 CCDC18Q5T9S5 1454 aa15.37■□□□□ 0.05
DEPDC1-201ENST00000370966 KTN1Q86UP2 1357 aaKnown RBP15.37■□□□□ 0.05
DEPDC1-201ENST00000370966 RALBP1Q15311 655 aa15.37■□□□□ 0.05
DEPDC1-201ENST00000370966 L3MBTL2Q969R5 705 aa15.37■□□□□ 0.05
DEPDC1-201ENST00000370966 C14orf37Q86TY3 774 aa15.36■□□□□ 0.05
DEPDC1-201ENST00000370966 ARID4BQ4LE39 1312 aaPredicted RBP15.36■□□□□ 0.05
DEPDC1-201ENST00000370966 GOLGA6L22H0YM25 854 aa15.34■□□□□ 0.05
DEPDC1-201ENST00000370966 FRAT1Q92837 279 aaPredicted RBP15.34■□□□□ 0.05
DEPDC1-201ENST00000370966 TNNT2P45379 298 aaPredicted RBP15.33■□□□□ 0.05
DEPDC1-201ENST00000370966 RGS3P49796 1198 aa15.33■□□□□ 0.04
DEPDC1-201ENST00000370966 ROCK2O75116 1388 aaKnown RBP15.32■□□□□ 0.04
DEPDC1-201ENST00000370966 U2SURPO15042 1029 aaKnown RBP15.32■□□□□ 0.04
DEPDC1-201ENST00000370966 HDGFP51858 240 aaKnown RBP15.31■□□□□ 0.04
DEPDC1-201ENST00000370966 NOP58Q9Y2X3 529 aaKnown RBP15.31■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms