RNA–Protein interactions for RNA: ENST00000368207.7

PTPRK-203, Transcript of protein tyrosine phosphatase, receptor type K, humanhuman

TSL 5 BASIC

Gene PTPRK, Length 4,758 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRK-203ENST00000368207 CFDP1Q9UEE9 299 aaPredicted RBP16.84■□□□□ 0.29
PTPRK-203ENST00000368207 SLC24A1O60721 1099 aa16.83■□□□□ 0.28
PTPRK-203ENST00000368207 CANXP27824 592 aaKnown RBP16.83■□□□□ 0.28
PTPRK-203ENST00000368207 SALL2Q9Y467 1007 aaPredicted RBP16.83■□□□□ 0.28
PTPRK-203ENST00000368207 BCL11AQ9H165 835 aa16.82■□□□□ 0.28
PTPRK-203ENST00000368207 SMARCA2P51531 1590 aa16.81■□□□□ 0.28
PTPRK-203ENST00000368207 NEFMP07197 916 aa16.8■□□□□ 0.28
PTPRK-203ENST00000368207 MYT1Q01538 1121 aa16.8■□□□□ 0.28
PTPRK-203ENST00000368207 FKBP8Q14318 412 aa16.79■□□□□ 0.28
PTPRK-203ENST00000368207 SENP3Q9H4L4 574 aaPredicted RBP16.78■□□□□ 0.28
PTPRK-203ENST00000368207 RGL3Q3MIN7 710 aa16.77■□□□□ 0.27
PTPRK-203ENST00000368207 SIN3AQ96ST3 1273 aa16.76■□□□□ 0.27
PTPRK-203ENST00000368207 EIF4G2P78344 907 aaKnown RBP eCLIP16.76■□□□□ 0.27
PTPRK-203ENST00000368207 TOP2AP11388 1531 aaKnown RBP16.76■□□□□ 0.27
PTPRK-203ENST00000368207 TMC1Q8TDI8 760 aa16.75■□□□□ 0.27
PTPRK-203ENST00000368207 TDRD9Q8NDG6 1382 aaKnown RBP16.75■□□□□ 0.27
PTPRK-203ENST00000368207 RTL5Q5HYW3 569 aaPredicted RBP16.74■□□□□ 0.27
PTPRK-203ENST00000368207 MRS2Q9HD23 443 aa16.74■□□□□ 0.27
PTPRK-203ENST00000368207 EIF4G1Q04637 1599 aaKnown RBP16.73■□□□□ 0.27
PTPRK-203ENST00000368207 KANK4Q5T7N3 995 aaPredicted RBP16.73■□□□□ 0.27
PTPRK-203ENST00000368207 CCNB3Q8WWL7 1395 aa16.72■□□□□ 0.27
PTPRK-203ENST00000368207 FHAD1B1AJZ9 1412 aa16.71■□□□□ 0.27
PTPRK-203ENST00000368207 ZBTB47Q9UFB7 747 aaPredicted RBP16.7■□□□□ 0.26
PTPRK-203ENST00000368207 ATAD2BQ9ULI0 1458 aa16.7■□□□□ 0.26
PTPRK-203ENST00000368207 VPS8Q8N3P4 1428 aa16.69■□□□□ 0.26
PTPRK-203ENST00000368207 PDS5BQ9NTI5 1447 aa16.66■□□□□ 0.26
PTPRK-203ENST00000368207 CADPSQ9ULU8 1353 aa16.66■□□□□ 0.26
PTPRK-203ENST00000368207 SMARCA4P51532 1647 aa16.64■□□□□ 0.25
PTPRK-203ENST00000368207 SENP3-EIF4A1A0A087X0R7 540 aa16.61■□□□□ 0.25
PTPRK-203ENST00000368207 RUSC2Q8N2Y8 1516 aa16.58■□□□□ 0.25
PTPRK-203ENST00000368207 IRX6P78412 446 aaPredicted RBP16.58■□□□□ 0.25
PTPRK-203ENST00000368207 WDR43Q15061 677 aaKnown RBP eCLIP16.58■□□□□ 0.25
PTPRK-203ENST00000368207 NPM2Q86SE8 214 aaKnown RBP16.57■□□□□ 0.24
PTPRK-203ENST00000368207 CARD11Q9BXL7 1154 aa16.56■□□□□ 0.24
PTPRK-203ENST00000368207 SCAF1Q9H7N4 1312 aaKnown RBP16.56■□□□□ 0.24
PTPRK-203ENST00000368207 RAPGEF2Q9Y4G8 1499 aa16.55■□□□□ 0.24
PTPRK-203ENST00000368207 PPP1R15AO75807 674 aaPredicted RBP16.52■□□□□ 0.24
PTPRK-203ENST00000368207 CCDC136Q96JN2 1154 aa16.5■□□□□ 0.23
PTPRK-203ENST00000368207 ARHGAP35Q9NRY4 1499 aa16.5■□□□□ 0.23
PTPRK-203ENST00000368207 ANP32AP39687 249 aaKnown RBP16.49■□□□□ 0.23
PTPRK-203ENST00000368207 FOXD1Q16676 465 aa16.49■□□□□ 0.23
PTPRK-203ENST00000368207 FHOD3Q2V2M9 1422 aa16.49■□□□□ 0.23
PTPRK-203ENST00000368207 SETD5Q9C0A6 1442 aa16.48■□□□□ 0.23
PTPRK-203ENST00000368207 ARID4BQ4LE39 1312 aaPredicted RBP16.48■□□□□ 0.23
PTPRK-203ENST00000368207 FMN1Q68DA7 1419 aa16.46■□□□□ 0.23
PTPRK-203ENST00000368207 PLEKHG5O94827 1062 aa16.45■□□□□ 0.22
PTPRK-203ENST00000368207 DCAF11Q8TEB1 546 aa16.45■□□□□ 0.22
PTPRK-203ENST00000368207 CARMIL2Q6F5E8 1435 aa16.44■□□□□ 0.22
PTPRK-203ENST00000368207 RAB3GAP2Q9H2M9 1393 aa16.43■□□□□ 0.22
PTPRK-203ENST00000368207 FANCD2Q9BXW9 1451 aa16.43■□□□□ 0.22
PTPRK-203ENST00000368207 KNSTRNQ9Y448 316 aa16.41■□□□□ 0.22
PTPRK-203ENST00000368207 PKD2Q13563 968 aa16.41■□□□□ 0.22
PTPRK-203ENST00000368207 GOLGA6L2Q8N9W4 650 aaPredicted RBP16.4■□□□□ 0.22
PTPRK-203ENST00000368207 CDCA8Q53HL2 280 aa16.38■□□□□ 0.21
PTPRK-203ENST00000368207 TIMELESSQ9UNS1 1208 aa16.37■□□□□ 0.21
PTPRK-203ENST00000368207 JPH4Q96JJ6 628 aa16.37■□□□□ 0.21
PTPRK-203ENST00000368207 C14orf37Q86TY3 774 aa16.36■□□□□ 0.21
PTPRK-203ENST00000368207 DNAJC5BQ9UF47 199 aa16.35■□□□□ 0.21
PTPRK-203ENST00000368207 MLECQ14165 292 aa16.35■□□□□ 0.21
PTPRK-203ENST00000368207 MPHOSPH9Q99550 1183 aa16.35■□□□□ 0.21
PTPRK-203ENST00000368207 GGT6Q6P531 493 aa16.34■□□□□ 0.21
PTPRK-203ENST00000368207 SUPT16HQ9Y5B9 1047 aaKnown RBP16.34■□□□□ 0.21
PTPRK-203ENST00000368207 ZBTB7CA1YPR0 619 aa16.34■□□□□ 0.21
PTPRK-203ENST00000368207 PPM1GO15355 546 aaPredicted RBP16.34■□□□□ 0.21
PTPRK-203ENST00000368207 BICRAQ9NZM4 1560 aa16.34■□□□□ 0.21
PTPRK-203ENST00000368207 NCAPD3P42695 1498 aa16.34■□□□□ 0.21
PTPRK-203ENST00000368207 HSPA5P11021 654 aaKnown RBP16.33■□□□□ 0.2
PTPRK-203ENST00000368207 CC2D1BQ5T0F9 858 aaKnown RBP16.33■□□□□ 0.2
PTPRK-203ENST00000368207 TNNT2P45379 298 aaPredicted RBP16.32■□□□□ 0.2
PTPRK-203ENST00000368207 POGKQ9P215 609 aa16.31■□□□□ 0.2
PTPRK-203ENST00000368207 NEUROD2Q15784 382 aa16.31■□□□□ 0.2
PTPRK-203ENST00000368207 HNRNPMP52272 730 aaKnown RBP eCLIP16.31■□□□□ 0.22e-6■■■□□ 18
PTPRK-203ENST00000368207 NUP155O75694 1391 aa16.3■□□□□ 0.2
PTPRK-203ENST00000368207 EFCAB2Q5VUJ9 269 aa16.3■□□□□ 0.2
PTPRK-203ENST00000368207 CC2D2AQ9P2K1 1620 aa16.3■□□□□ 0.2
PTPRK-203ENST00000368207 IGF1RP08069 1367 aa16.3■□□□□ 0.2
PTPRK-203ENST00000368207 FGD5Q6ZNL6 1462 aa16.29■□□□□ 0.2
PTPRK-203ENST00000368207 CFAP53Q96M91 514 aa16.29■□□□□ 0.2
PTPRK-203ENST00000368207 RAD54L2Q9Y4B4 1467 aa16.28■□□□□ 0.2
PTPRK-203ENST00000368207 KANK1Q14678 1352 aa16.28■□□□□ 0.2
PTPRK-203ENST00000368207 UPF2Q9HAU5 1272 aaKnown RBP16.27■□□□□ 0.2
PTPRK-203ENST00000368207 TMF1P82094 1093 aa16.26■□□□□ 0.19
PTPRK-203ENST00000368207 ANKRD30AQ9BXX3 1397 aa16.25■□□□□ 0.19
PTPRK-203ENST00000368207 SAFB2Q14151 953 aaKnown RBP eCLIP16.25■□□□□ 0.19
PTPRK-203ENST00000368207 HSP90AA1P07900 732 aaKnown RBP16.25■□□□□ 0.19
PTPRK-203ENST00000368207 TRHP20396 242 aaPredicted RBP16.24■□□□□ 0.19
PTPRK-203ENST00000368207 L3MBTL2Q969R5 705 aa16.23■□□□□ 0.19
PTPRK-203ENST00000368207 KIF3BO15066 747 aa16.21■□□□□ 0.18
PTPRK-203ENST00000368207 CCDC18Q5T9S5 1454 aa16.2■□□□□ 0.18
PTPRK-203ENST00000368207 GAPVD1Q14C86 1478 aa16.2■□□□□ 0.18
PTPRK-203ENST00000368207 A0A0G2JS52 829 aa16.19■□□□□ 0.18
PTPRK-203ENST00000368207 STK26Q9P289 416 aa16.18■□□□□ 0.18
PTPRK-203ENST00000368207 DHX57Q6P158 1386 aaKnown RBP16.17■□□□□ 0.18
PTPRK-203ENST00000368207 U2SURPO15042 1029 aaKnown RBP16.16■□□□□ 0.18
PTPRK-203ENST00000368207 SRPK2P78362 688 aaKnown RBP16.16■□□□□ 0.18
PTPRK-203ENST00000368207 LMOD2Q6P5Q4 547 aa16.16■□□□□ 0.18
PTPRK-203ENST00000368207 LAS1LQ9Y4W2 734 aaKnown RBP16.15■□□□□ 0.18
PTPRK-203ENST00000368207 SPAG9O60271 1321 aaKnown RBP16.15■□□□□ 0.18
PTPRK-203ENST00000368207 MAPK8IP3Q9UPT6 1336 aa16.15■□□□□ 0.18
PTPRK-203ENST00000368207 NUDCQ9Y266 331 aa16.15■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms