RNA–Protein interactions for RNA: ENST00000359759.8

COL18A1-203, Transcript of collagen type XVIII alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL18A1, Length 6,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-203ENST00000359759 MIER1Q8N108 512 aa21.27■■□□□ 1
COL18A1-203ENST00000359759 PTMAP06454 111 aaKnown RBP21.26■□□□□ 0.99
COL18A1-203ENST00000359759 DNTTIP2Q5QJE6 756 aaKnown RBP21.25■□□□□ 0.99
COL18A1-203ENST00000359759 TNNT2P45379 298 aaPredicted RBP21.25■□□□□ 0.99
COL18A1-203ENST00000359759 BECN1Q14457 450 aa21.25■□□□□ 0.99
COL18A1-203ENST00000359759 DDRGK1Q96HY6 314 aa21.25■□□□□ 0.99
COL18A1-203ENST00000359759 CSRNP3Q8WYN3 585 aa21.22■□□□□ 0.99
COL18A1-203ENST00000359759 NAP1L5Q96NT1 182 aaPredicted RBP21.22■□□□□ 0.99
COL18A1-203ENST00000359759 GOLGA6L22H0YM25 854 aa21.17■□□□□ 0.98
COL18A1-203ENST00000359759 LAS1LQ9Y4W2 734 aaKnown RBP21.15■□□□□ 0.98
COL18A1-203ENST00000359759 TAOK2Q9UL54 1235 aa21.15■□□□□ 0.98
COL18A1-203ENST00000359759 AMER1Q5JTC6 1135 aaPredicted RBP21.12■□□□□ 0.97
COL18A1-203ENST00000359759 ANP32EQ9BTT0 268 aa21.11■□□□□ 0.97
COL18A1-203ENST00000359759 ZRSR1Q15695 479 aaKnown RBP21.1■□□□□ 0.97
COL18A1-203ENST00000359759 PLCB2Q00722 1185 aa21.09■□□□□ 0.97
COL18A1-203ENST00000359759 C14orf37Q86TY3 774 aa21.08■□□□□ 0.97
COL18A1-203ENST00000359759 SUPT16HQ9Y5B9 1047 aaKnown RBP21.01■□□□□ 0.95
COL18A1-203ENST00000359759 CASC1Q6TDU7 716 aa20.98■□□□□ 0.95
COL18A1-203ENST00000359759 ERICH6BQ5W0A0 696 aa20.97■□□□□ 0.95
COL18A1-203ENST00000359759 NPM1P06748 294 aaKnown RBP eCLIP20.94■□□□□ 0.94
COL18A1-203ENST00000359759 FTSJ3Q8IY81 847 aaKnown RBP20.93■□□□□ 0.94
COL18A1-203ENST00000359759 RGS3P49796 1198 aa20.93■□□□□ 0.94
COL18A1-203ENST00000359759 EIF4G2P78344 907 aaKnown RBP eCLIP20.92■□□□□ 0.941e-6■■■□□ 17
COL18A1-203ENST00000359759 ARID4BQ4LE39 1312 aaPredicted RBP20.92■□□□□ 0.94
COL18A1-203ENST00000359759 PPM1GO15355 546 aaPredicted RBP20.92■□□□□ 0.94
COL18A1-203ENST00000359759 NEUROD2Q15784 382 aa20.9■□□□□ 0.94
COL18A1-203ENST00000359759 NOP58Q9Y2X3 529 aaKnown RBP20.89■□□□□ 0.93
COL18A1-203ENST00000359759 RRP7BPQ9NSQ0 103 aa20.88■□□□□ 0.93
COL18A1-203ENST00000359759 HSP90AB1P08238 724 aaKnown RBP20.88■□□□□ 0.93
COL18A1-203ENST00000359759 DCAF1Q9Y4B6 1507 aa20.86■□□□□ 0.93
COL18A1-203ENST00000359759 TSPY4P0CV99 314 aa20.84■□□□□ 0.93
COL18A1-203ENST00000359759 TSPY10P0CW01 314 aa20.84■□□□□ 0.93
COL18A1-203ENST00000359759 NAP1L2Q9ULW6 460 aaPredicted RBP20.84■□□□□ 0.93
COL18A1-203ENST00000359759 RGL3Q3MIN7 710 aa20.84■□□□□ 0.93
COL18A1-203ENST00000359759 SPRYD3Q8NCJ5 442 aa20.84■□□□□ 0.93
COL18A1-203ENST00000359759 NCBP3Q53F19 620 aaKnown RBP20.82■□□□□ 0.92
COL18A1-203ENST00000359759 FRAT1Q92837 279 aaPredicted RBP20.82■□□□□ 0.92
COL18A1-203ENST00000359759 GOLGA6L6A8MZA4 724 aa20.81■□□□□ 0.92
COL18A1-203ENST00000359759 PPP1R15AO75807 674 aaPredicted RBP20.8■□□□□ 0.92
COL18A1-203ENST00000359759 ARID3AQ99856 593 aa20.79■□□□□ 0.92
COL18A1-203ENST00000359759 CFAP53Q96M91 514 aa20.77■□□□□ 0.92
COL18A1-203ENST00000359759 MTUS2Q5JR59 1369 aa20.77■□□□□ 0.91
COL18A1-203ENST00000359759 HAP1P54257 671 aaPredicted RBP20.75■□□□□ 0.91
COL18A1-203ENST00000359759 FGD1P98174 961 aa20.75■□□□□ 0.91
COL18A1-203ENST00000359759 B4GALNT3Q6L9W6 998 aa20.75■□□□□ 0.91
COL18A1-203ENST00000359759 DEKP35659 375 aaKnown RBP20.74■□□□□ 0.91
COL18A1-203ENST00000359759 KNSTRNQ9Y448 316 aa20.74■□□□□ 0.91
COL18A1-203ENST00000359759 OS9Q13438 667 aaPredicted RBP20.73■□□□□ 0.91
COL18A1-203ENST00000359759 PPP4R2Q9NY27 417 aa20.72■□□□□ 0.91
COL18A1-203ENST00000359759 MSNP26038 577 aaKnown RBP20.72■□□□□ 0.91
COL18A1-203ENST00000359759 DRC7Q8IY82 874 aa20.71■□□□□ 0.91
COL18A1-203ENST00000359759 CHAF1AQ13111 956 aaPredicted RBP20.7■□□□□ 0.9
COL18A1-203ENST00000359759 KCNJ4P48050 445 aa20.7■□□□□ 0.9
COL18A1-203ENST00000359759 CLSTN1O94985 981 aa20.69■□□□□ 0.9
COL18A1-203ENST00000359759 MAPK8IP3Q9UPT6 1336 aa20.68■□□□□ 0.9
COL18A1-203ENST00000359759 CC2D1BQ5T0F9 858 aaKnown RBP20.68■□□□□ 0.9
COL18A1-203ENST00000359759 ZBTB4Q9P1Z0 1013 aaPredicted RBP20.66■□□□□ 0.9
COL18A1-203ENST00000359759 HSCBQ8IWL3 235 aa20.65■□□□□ 0.9
COL18A1-203ENST00000359759 GOLGA6L4A6NEF3 574 aa20.65■□□□□ 0.9
COL18A1-203ENST00000359759 NPHP1O15259 732 aa20.65■□□□□ 0.9
COL18A1-203ENST00000359759 KCNH8Q96L42 1107 aa20.64■□□□□ 0.9
COL18A1-203ENST00000359759 NRDCO43847 1150 aa20.63■□□□□ 0.89
COL18A1-203ENST00000359759 CARD11Q9BXL7 1154 aa20.62■□□□□ 0.89
COL18A1-203ENST00000359759 LMOD2Q6P5Q4 547 aa20.61■□□□□ 0.89
COL18A1-203ENST00000359759 SCRIBQ14160 1630 aa20.59■□□□□ 0.89
COL18A1-203ENST00000359759 L1TD1Q5T7N2 865 aaKnown RBP20.58■□□□□ 0.89
COL18A1-203ENST00000359759 U2SURPO15042 1029 aaKnown RBP20.58■□□□□ 0.89
COL18A1-203ENST00000359759 GZF1Q9H116 711 aaPredicted RBP20.56■□□□□ 0.88
COL18A1-203ENST00000359759 GOLGA2Q08379 1002 aa20.55■□□□□ 0.88
COL18A1-203ENST00000359759 NUDCQ9Y266 331 aa20.53■□□□□ 0.88
COL18A1-203ENST00000359759 TRHP20396 242 aaPredicted RBP20.52■□□□□ 0.88
COL18A1-203ENST00000359759 CDCA8Q53HL2 280 aa20.52■□□□□ 0.88
COL18A1-203ENST00000359759 CLIP1P30622 1438 aa20.51■□□□□ 0.87
COL18A1-203ENST00000359759 CHMP7Q8WUX9 453 aaPredicted RBP20.5■□□□□ 0.87
COL18A1-203ENST00000359759 SIN3AQ96ST3 1273 aa20.5■□□□□ 0.87
COL18A1-203ENST00000359759 ISY1Q9ULR0 285 aaKnown RBP20.5■□□□□ 0.87
COL18A1-203ENST00000359759 APBB1O00213 710 aa20.5■□□□□ 0.87
COL18A1-203ENST00000359759 POGKQ9P215 609 aa20.47■□□□□ 0.87
COL18A1-203ENST00000359759 RBM19Q9Y4C8 960 aaKnown RBP20.47■□□□□ 0.87
COL18A1-203ENST00000359759 SOX12O15370 315 aa20.47■□□□□ 0.87
COL18A1-203ENST00000359759 MCCP23508 829 aa20.46■□□□□ 0.87
COL18A1-203ENST00000359759 GNL2Q13823 731 aaKnown RBP20.46■□□□□ 0.87
COL18A1-203ENST00000359759 PNNQ9H307 717 aaKnown RBP20.46■□□□□ 0.87
COL18A1-203ENST00000359759 ZCCHC6Q5VYS8 1495 aaKnown RBP20.44■□□□□ 0.86
COL18A1-203ENST00000359759 NOC3LQ8WTT2 800 aaKnown RBP20.44■□□□□ 0.86
COL18A1-203ENST00000359759 CHMP4BQ9H444 224 aaKnown RBP20.43■□□□□ 0.86
COL18A1-203ENST00000359759 MS4A1P11836 297 aa20.42■□□□□ 0.86
COL18A1-203ENST00000359759 PDE4CQ08493 712 aa20.42■□□□□ 0.86
COL18A1-203ENST00000359759 SLKQ9H2G2 1235 aaPredicted RBP20.41■□□□□ 0.86
COL18A1-203ENST00000359759 TNNT3P45378 269 aaPredicted RBP20.4■□□□□ 0.86
COL18A1-203ENST00000359759 KIAA2012Q0VF49 1180 aa20.38■□□□□ 0.85
COL18A1-203ENST00000359759 PLEKHD1A6NEE1 506 aa20.35■□□□□ 0.85
COL18A1-203ENST00000359759 MYO15BQ96JP2 1530 aa20.34■□□□□ 0.85
COL18A1-203ENST00000359759 RSF1Q96T23 1441 aaPredicted RBP20.34■□□□□ 0.85
COL18A1-203ENST00000359759 GBP4Q96PP9 640 aa20.32■□□□□ 0.84
COL18A1-203ENST00000359759 CFDP1Q9UEE9 299 aaPredicted RBP20.32■□□□□ 0.84
COL18A1-203ENST00000359759 ERCC6Q03468 1493 aa20.31■□□□□ 0.84
COL18A1-203ENST00000359759 FOXD4L1Q9NU39 408 aa20.31■□□□□ 0.84
COL18A1-203ENST00000359759 HSP90B1P14625 803 aaKnown RBP20.31■□□□□ 0.84
COL18A1-203ENST00000359759 CEP162Q5TB80 1403 aa20.31■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms