RNA–Protein interactions for RNA: ENST00000359082.3

SHANK1-202, Transcript of SH3 and multiple ankyrin repeat domains 1, humanhuman

TSL 5 BASIC

Gene SHANK1, Length 6,459 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1-202ENST00000359082 NCLP19338 710 aaKnown RBP24.29■■□□□ 1.48
SHANK1-202ENST00000359082 TSPY4P0CV99 314 aa24.28■■□□□ 1.48
SHANK1-202ENST00000359082 TSPY10P0CW01 314 aa24.28■■□□□ 1.48
SHANK1-202ENST00000359082 TPRNQ4KMQ1 711 aa24.27■■□□□ 1.48
SHANK1-202ENST00000359082 BECN1Q14457 450 aa24.25■■□□□ 1.47
SHANK1-202ENST00000359082 MIER1Q8N108 512 aa24.24■■□□□ 1.47
SHANK1-202ENST00000359082 SENP3-EIF4A1A0A087X0R7 540 aa24.24■■□□□ 1.47
SHANK1-202ENST00000359082 TRIM44Q96DX7 344 aaPredicted RBP24.23■■□□□ 1.47
SHANK1-202ENST00000359082 DDRGK1Q96HY6 314 aa24.23■■□□□ 1.47
SHANK1-202ENST00000359082 MTUS2Q5JR59 1369 aa24.2■■□□□ 1.46
SHANK1-202ENST00000359082 PPP1R15AO75807 674 aaPredicted RBP24.19■■□□□ 1.46
SHANK1-202ENST00000359082 TULP1O00294 542 aaPredicted RBP24.18■■□□□ 1.46
SHANK1-202ENST00000359082 RRP7BPQ9NSQ0 103 aa24.17■■□□□ 1.46
SHANK1-202ENST00000359082 EIF4G2P78344 907 aaKnown RBP eCLIP24.15■■□□□ 1.46
SHANK1-202ENST00000359082 DCAF1Q9Y4B6 1507 aa24.14■■□□□ 1.46
SHANK1-202ENST00000359082 RB1CC1Q8TDY2 1594 aa24.14■■□□□ 1.46
SHANK1-202ENST00000359082 GOLGA6L22H0YM25 854 aa24.14■■□□□ 1.46
SHANK1-202ENST00000359082 PTMAP06454 111 aaKnown RBP24.11■■□□□ 1.45
SHANK1-202ENST00000359082 ZRSR1Q15695 479 aaKnown RBP24.09■■□□□ 1.45
SHANK1-202ENST00000359082 PPM1GO15355 546 aaPredicted RBP24.08■■□□□ 1.45
SHANK1-202ENST00000359082 HAP1P54257 671 aaPredicted RBP24.08■■□□□ 1.44
SHANK1-202ENST00000359082 CHMP7Q8WUX9 453 aaPredicted RBP24.08■■□□□ 1.44
SHANK1-202ENST00000359082 CASC1Q6TDU7 716 aa24.07■■□□□ 1.44
SHANK1-202ENST00000359082 KCNH8Q96L42 1107 aa24.07■■□□□ 1.44
SHANK1-202ENST00000359082 RGL3Q3MIN7 710 aa24.07■■□□□ 1.44
SHANK1-202ENST00000359082 TAOK2Q9UL54 1235 aa24.06■■□□□ 1.44
SHANK1-202ENST00000359082 LAS1LQ9Y4W2 734 aaKnown RBP24.04■■□□□ 1.44
SHANK1-202ENST00000359082 DNTTIP2Q5QJE6 756 aaKnown RBP24.03■■□□□ 1.44
SHANK1-202ENST00000359082 FTSJ3Q8IY81 847 aaKnown RBP24.03■■□□□ 1.44
SHANK1-202ENST00000359082 CFAP53Q96M91 514 aa24.02■■□□□ 1.44
SHANK1-202ENST00000359082 ANP32EQ9BTT0 268 aa24■■□□□ 1.43
SHANK1-202ENST00000359082 NEUROD2Q15784 382 aa23.97■■□□□ 1.43
SHANK1-202ENST00000359082 KNSTRNQ9Y448 316 aa23.95■■□□□ 1.42
SHANK1-202ENST00000359082 ARID4BQ4LE39 1312 aaPredicted RBP23.93■■□□□ 1.42
SHANK1-202ENST00000359082 SUPT16HQ9Y5B9 1047 aaKnown RBP23.92■■□□□ 1.42
SHANK1-202ENST00000359082 TNNT2P45379 298 aaPredicted RBP23.92■■□□□ 1.42
SHANK1-202ENST00000359082 CLIP1P30622 1438 aa23.92■■□□□ 1.42
SHANK1-202ENST00000359082 PLCB2Q00722 1185 aa23.9■■□□□ 1.42
SHANK1-202ENST00000359082 MAPK8IP3Q9UPT6 1336 aa23.87■■□□□ 1.41
SHANK1-202ENST00000359082 NAP1L5Q96NT1 182 aaPredicted RBP23.87■■□□□ 1.41
SHANK1-202ENST00000359082 RGS3P49796 1198 aa23.86■■□□□ 1.41
SHANK1-202ENST00000359082 RTN4Q9NQC3 1192 aaKnown RBP23.86■■□□□ 1.41
SHANK1-202ENST00000359082 FRAT1Q92837 279 aaPredicted RBP23.85■■□□□ 1.41
SHANK1-202ENST00000359082 CARD11Q9BXL7 1154 aa23.85■■□□□ 1.41
SHANK1-202ENST00000359082 NPHP1O15259 732 aa23.84■■□□□ 1.41
SHANK1-202ENST00000359082 LMOD2Q6P5Q4 547 aa23.84■■□□□ 1.41
SHANK1-202ENST00000359082 CDCA8Q53HL2 280 aa23.83■■□□□ 1.4
SHANK1-202ENST00000359082 PLEKHD1A6NEE1 506 aa23.82■■□□□ 1.4
SHANK1-202ENST00000359082 OS9Q13438 667 aaPredicted RBP23.81■■□□□ 1.4
SHANK1-202ENST00000359082 NACADO15069 1562 aa23.81■■□□□ 1.4
SHANK1-202ENST00000359082 RSF1Q96T23 1441 aaPredicted RBP23.81■■□□□ 1.4
SHANK1-202ENST00000359082 HSP90AB1P08238 724 aaKnown RBP23.8■■□□□ 1.4
SHANK1-202ENST00000359082 NAP1L2Q9ULW6 460 aaPredicted RBP23.8■■□□□ 1.4
SHANK1-202ENST00000359082 CC2D1BQ5T0F9 858 aaKnown RBP23.79■■□□□ 1.4
SHANK1-202ENST00000359082 FGD1P98174 961 aa23.75■■□□□ 1.39
SHANK1-202ENST00000359082 POGKQ9P215 609 aa23.75■■□□□ 1.39
SHANK1-202ENST00000359082 GOLGA6L6A8MZA4 724 aa23.75■■□□□ 1.39
SHANK1-202ENST00000359082 NUDCQ9Y266 331 aa23.75■■□□□ 1.39
SHANK1-202ENST00000359082 KCNJ4P48050 445 aa23.71■■□□□ 1.39
SHANK1-202ENST00000359082 U2SURPO15042 1029 aaKnown RBP23.71■■□□□ 1.39
SHANK1-202ENST00000359082 ERICH6BQ5W0A0 696 aa23.7■■□□□ 1.39
SHANK1-202ENST00000359082 CFDP1Q9UEE9 299 aaPredicted RBP23.7■■□□□ 1.39
SHANK1-202ENST00000359082 BAZ1BQ9UIG0 1483 aaKnown RBP23.7■■□□□ 1.38
SHANK1-202ENST00000359082 NOP58Q9Y2X3 529 aaKnown RBP23.69■■□□□ 1.38
SHANK1-202ENST00000359082 EEA1Q15075 1411 aa23.68■■□□□ 1.38
SHANK1-202ENST00000359082 PPP4R2Q9NY27 417 aa23.68■■□□□ 1.38
SHANK1-202ENST00000359082 GOLGA3Q08378 1498 aa23.67■■□□□ 1.38
SHANK1-202ENST00000359082 GOLGA2Q08379 1002 aa23.66■■□□□ 1.38
SHANK1-202ENST00000359082 CEP162Q5TB80 1403 aa23.65■■□□□ 1.38
SHANK1-202ENST00000359082 SPRYD3Q8NCJ5 442 aa23.64■■□□□ 1.37
SHANK1-202ENST00000359082 CLSTN1O94985 981 aa23.63■■□□□ 1.37
SHANK1-202ENST00000359082 SIN3AQ96ST3 1273 aa23.61■■□□□ 1.37
SHANK1-202ENST00000359082 NCBP3Q53F19 620 aaKnown RBP23.61■■□□□ 1.37
SHANK1-202ENST00000359082 B4GALNT3Q6L9W6 998 aa23.59■■□□□ 1.37
SHANK1-202ENST00000359082 CHMP4BQ9H444 224 aaKnown RBP23.59■■□□□ 1.37
SHANK1-202ENST00000359082 HSCBQ8IWL3 235 aa23.59■■□□□ 1.37
SHANK1-202ENST00000359082 SOX12O15370 315 aa23.58■■□□□ 1.37
SHANK1-202ENST00000359082 GOLGA6L4A6NEF3 574 aa23.58■■□□□ 1.37
SHANK1-202ENST00000359082 MS4A1P11836 297 aa23.55■■□□□ 1.36
SHANK1-202ENST00000359082 ERCC6Q03468 1493 aa23.55■■□□□ 1.36
SHANK1-202ENST00000359082 PNNQ9H307 717 aaKnown RBP23.54■■□□□ 1.36
SHANK1-202ENST00000359082 NRDCO43847 1150 aa23.53■■□□□ 1.36
SHANK1-202ENST00000359082 DRC7Q8IY82 874 aa23.53■■□□□ 1.36
SHANK1-202ENST00000359082 WRNQ14191 1432 aaPredicted RBP eCLIP23.52■■□□□ 1.36
SHANK1-202ENST00000359082 KIF27Q86VH2 1401 aa23.52■■□□□ 1.36
SHANK1-202ENST00000359082 ISY1Q9ULR0 285 aaKnown RBP23.5■■□□□ 1.35
SHANK1-202ENST00000359082 CHAF1AQ13111 956 aaPredicted RBP23.5■■□□□ 1.35
SHANK1-202ENST00000359082 MYO15BQ96JP2 1530 aa23.5■■□□□ 1.35
SHANK1-202ENST00000359082 MCCP23508 829 aa23.48■■□□□ 1.35
SHANK1-202ENST00000359082 MSNP26038 577 aaKnown RBP23.48■■□□□ 1.35
SHANK1-202ENST00000359082 TMF1P82094 1093 aa23.47■■□□□ 1.35
SHANK1-202ENST00000359082 AMER1Q5JTC6 1135 aaPredicted RBP23.47■■□□□ 1.35
SHANK1-202ENST00000359082 DCAF11Q8TEB1 546 aa23.45■■□□□ 1.34
SHANK1-202ENST00000359082 SRPK2P78362 688 aaKnown RBP23.45■■□□□ 1.34
SHANK1-202ENST00000359082 SAFB2Q14151 953 aaKnown RBP eCLIP23.45■■□□□ 1.34
SHANK1-202ENST00000359082 APBB1O00213 710 aa23.44■■□□□ 1.34
SHANK1-202ENST00000359082 GNL2Q13823 731 aaKnown RBP23.43■■□□□ 1.34
SHANK1-202ENST00000359082 MORC1Q86VD1 984 aa23.41■■□□□ 1.34
SHANK1-202ENST00000359082 MLECQ14165 292 aa23.4■■□□□ 1.34
SHANK1-202ENST00000359082 L1TD1Q5T7N2 865 aaKnown RBP23.39■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms