RNA–Protein interactions for RNA: ENST00000358181.8

CHD3-202, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CHD3, Length 7,286 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-202ENST00000358181 TRIM44Q96DX7 344 aaPredicted RBP13.04□□□□□ -0.32
CHD3-202ENST00000358181 ARID4BQ4LE39 1312 aaPredicted RBP13.04□□□□□ -0.32
CHD3-202ENST00000358181 GOLGA2Q08379 1002 aa13.01□□□□□ -0.33
CHD3-202ENST00000358181 PPP1R15AO75807 674 aaPredicted RBP13□□□□□ -0.33
CHD3-202ENST00000358181 FAM9BQ8IZU0 186 aa12.99□□□□□ -0.33
CHD3-202ENST00000358181 DNTTIP2Q5QJE6 756 aaKnown RBP12.99□□□□□ -0.33
CHD3-202ENST00000358181 CHIC2Q9UKJ5 165 aa12.99□□□□□ -0.33
CHD3-202ENST00000358181 PLCB2Q00722 1185 aa12.98□□□□□ -0.33
CHD3-202ENST00000358181 PTMAP06454 111 aaKnown RBP12.98□□□□□ -0.33
CHD3-202ENST00000358181 SCRIBQ14160 1630 aa12.97□□□□□ -0.33
CHD3-202ENST00000358181 SENP3-EIF4A1A0A087X0R7 540 aa12.95□□□□□ -0.34
CHD3-202ENST00000358181 PPM1GO15355 546 aaPredicted RBP12.95□□□□□ -0.34
CHD3-202ENST00000358181 WDR43Q15061 677 aaKnown RBP eCLIP12.94□□□□□ -0.346e-7■■□□□ 12.2
CHD3-202ENST00000358181 GOLGA6L2Q8N9W4 650 aaPredicted RBP12.94□□□□□ -0.34
CHD3-202ENST00000358181 HIRIP3Q9BW71 556 aaPredicted RBP12.92□□□□□ -0.34
CHD3-202ENST00000358181 KDM2AQ9Y2K7 1162 aa12.91□□□□□ -0.34
CHD3-202ENST00000358181 LAS1LQ9Y4W2 734 aaKnown RBP12.91□□□□□ -0.34
CHD3-202ENST00000358181 ERICH6BQ5W0A0 696 aa12.91□□□□□ -0.34
CHD3-202ENST00000358181 FGD1P98174 961 aa12.87□□□□□ -0.35
CHD3-202ENST00000358181 WWC1Q8IX03 1113 aa12.87□□□□□ -0.35
CHD3-202ENST00000358181 FKBP8Q14318 412 aa12.87□□□□□ -0.35
CHD3-202ENST00000358181 CSRNP3Q8WYN3 585 aa12.87□□□□□ -0.35
CHD3-202ENST00000358181 TNNT2P45379 298 aaPredicted RBP12.86□□□□□ -0.35
CHD3-202ENST00000358181 TMC1Q8TDI8 760 aa12.86□□□□□ -0.35
CHD3-202ENST00000358181 OS9Q13438 667 aaPredicted RBP12.86□□□□□ -0.35
CHD3-202ENST00000358181 NOC3LQ8WTT2 800 aaKnown RBP12.86□□□□□ -0.35
CHD3-202ENST00000358181 TRHP20396 242 aaPredicted RBP12.84□□□□□ -0.35
CHD3-202ENST00000358181 IRX6P78412 446 aaPredicted RBP12.84□□□□□ -0.35
CHD3-202ENST00000358181 ACIN1Q9UKV3 1341 aaKnown RBP12.84□□□□□ -0.35
CHD3-202ENST00000358181 DDX10Q13206 875 aaKnown RBP12.83□□□□□ -0.36
CHD3-202ENST00000358181 HNRNPUQ00839 825 aaKnown RBP eCLIP12.81□□□□□ -0.36
CHD3-202ENST00000358181 CCDC9Q9Y3X0 531 aaKnown RBP12.81□□□□□ -0.36
CHD3-202ENST00000358181 RTN4Q9NQC3 1192 aaKnown RBP12.81□□□□□ -0.36
CHD3-202ENST00000358181 CNKSR2Q8WXI2 1034 aa12.81□□□□□ -0.36
CHD3-202ENST00000358181 KCNH8Q96L42 1107 aa12.8□□□□□ -0.36
CHD3-202ENST00000358181 CCDC136Q96JN2 1154 aa12.8□□□□□ -0.36
CHD3-202ENST00000358181 ZNF330Q9Y3S2 320 aaPredicted RBP12.79□□□□□ -0.36
CHD3-202ENST00000358181 CASC1Q6TDU7 716 aa12.79□□□□□ -0.36
CHD3-202ENST00000358181 SOX12O15370 315 aa12.79□□□□□ -0.36
CHD3-202ENST00000358181 KCNJ4P48050 445 aa12.78□□□□□ -0.36
CHD3-202ENST00000358181 PNNQ9H307 717 aaKnown RBP12.77□□□□□ -0.36
CHD3-202ENST00000358181 GOLGA6L6A8MZA4 724 aa12.77□□□□□ -0.37
CHD3-202ENST00000358181 TMX4Q9H1E5 349 aaPredicted RBP12.76□□□□□ -0.37
CHD3-202ENST00000358181 G3V3G9 751 aa12.76□□□□□ -0.37
CHD3-202ENST00000358181 DCAF8Q5TAQ9 597 aa12.76□□□□□ -0.37
CHD3-202ENST00000358181 GOLGA6L22H0YM25 854 aa12.76□□□□□ -0.37
CHD3-202ENST00000358181 A0A0U1RQG5 324 aaPredicted RBP12.74□□□□□ -0.37
CHD3-202ENST00000358181 KIAA2012Q0VF49 1180 aa12.74□□□□□ -0.37
CHD3-202ENST00000358181 TONSLQ96HA7 1378 aa12.73□□□□□ -0.37
CHD3-202ENST00000358181 GNL2Q13823 731 aaKnown RBP12.73□□□□□ -0.37
CHD3-202ENST00000358181 VPS53Q5VIR6 699 aa12.73□□□□□ -0.37
CHD3-202ENST00000358181 KLHL34Q8N239 644 aa12.71□□□□□ -0.37
CHD3-202ENST00000358181 CHMP7Q8WUX9 453 aaPredicted RBP12.71□□□□□ -0.38
CHD3-202ENST00000358181 RRP7BPQ9NSQ0 103 aa12.71□□□□□ -0.38
CHD3-202ENST00000358181 DRC7Q8IY82 874 aa12.7□□□□□ -0.38
CHD3-202ENST00000358181 NAP1L5Q96NT1 182 aaPredicted RBP12.7□□□□□ -0.38
CHD3-202ENST00000358181 NEUROD2Q15784 382 aa12.7□□□□□ -0.38
CHD3-202ENST00000358181 PHF23Q9BUL5 403 aaPredicted RBP12.69□□□□□ -0.38
CHD3-202ENST00000358181 ARID3AQ99856 593 aa12.68□□□□□ -0.38
CHD3-202ENST00000358181 CREBRFQ8IUR6 639 aa12.68□□□□□ -0.38
CHD3-202ENST00000358181 RGL3Q3MIN7 710 aa12.67□□□□□ -0.38
CHD3-202ENST00000358181 BECN1Q14457 450 aa12.67□□□□□ -0.38
CHD3-202ENST00000358181 FTSJ3Q8IY81 847 aaKnown RBP12.67□□□□□ -0.38
CHD3-202ENST00000358181 PATL2C9JE40 543 aaKnown RBP12.64□□□□□ -0.39
CHD3-202ENST00000358181 MSH5O43196 834 aa12.64□□□□□ -0.39
CHD3-202ENST00000358181 GOLGA6L4A6NEF3 574 aa12.64□□□□□ -0.39
CHD3-202ENST00000358181 MLECQ14165 292 aa12.62□□□□□ -0.39
CHD3-202ENST00000358181 ANP32EQ9BTT0 268 aa12.61□□□□□ -0.39
CHD3-202ENST00000358181 CHAF1AQ13111 956 aaPredicted RBP12.6□□□□□ -0.39
CHD3-202ENST00000358181 SPRYD3Q8NCJ5 442 aa12.6□□□□□ -0.39
CHD3-202ENST00000358181 AEBP2Q6ZN18 517 aaPredicted RBP12.6□□□□□ -0.39
CHD3-202ENST00000358181 HSP90AB1P08238 724 aaKnown RBP12.6□□□□□ -0.39
CHD3-202ENST00000358181 CWC22Q9HCG8 908 aaKnown RBP12.59□□□□□ -0.39
CHD3-202ENST00000358181 TSPY4P0CV99 314 aa12.58□□□□□ -0.4
CHD3-202ENST00000358181 TSPY10P0CW01 314 aa12.58□□□□□ -0.4
CHD3-202ENST00000358181 NRDCO43847 1150 aa12.58□□□□□ -0.4
CHD3-202ENST00000358181 HSP90B1P14625 803 aaKnown RBP12.58□□□□□ -0.4
CHD3-202ENST00000358181 RAD21O60216 631 aa12.58□□□□□ -0.4
CHD3-202ENST00000358181 EIF4G2P78344 907 aaKnown RBP eCLIP12.57□□□□□ -0.4
CHD3-202ENST00000358181 CSB-PGBD3P0DP91 1061 aa12.56□□□□□ -0.4
CHD3-202ENST00000358181 MRS2Q9HD23 443 aa12.56□□□□□ -0.4
CHD3-202ENST00000358181 MTUS2Q5JR59 1369 aa12.56□□□□□ -0.4
CHD3-202ENST00000358181 POGKQ9P215 609 aa12.56□□□□□ -0.4
CHD3-202ENST00000358181 APBB1O00213 710 aa12.56□□□□□ -0.4
CHD3-202ENST00000358181 L1TD1Q5T7N2 865 aaKnown RBP12.55□□□□□ -0.4
CHD3-202ENST00000358181 FRAT1Q92837 279 aaPredicted RBP12.55□□□□□ -0.4
CHD3-202ENST00000358181 CHMP3Q9Y3E7 222 aa12.55□□□□□ -0.4
CHD3-202ENST00000358181 PAK3O75914 559 aaPredicted RBP12.55□□□□□ -0.4
CHD3-202ENST00000358181 RASSF8Q8NHQ8 419 aa12.55□□□□□ -0.4
CHD3-202ENST00000358181 MAPK8IP3Q9UPT6 1336 aa12.54□□□□□ -0.4
CHD3-202ENST00000358181 CEP89Q96ST8 783 aa12.54□□□□□ -0.4
CHD3-202ENST00000358181 VSIG10Q8N0Z9 540 aa12.53□□□□□ -0.4
CHD3-202ENST00000358181 CFAP53Q96M91 514 aa12.53□□□□□ -0.4
CHD3-202ENST00000358181 DCAF8L1A6NGE4 600 aa12.53□□□□□ -0.4
CHD3-202ENST00000358181 U2SURPO15042 1029 aaKnown RBP12.53□□□□□ -0.4
CHD3-202ENST00000358181 MARCH6O60337 910 aa12.52□□□□□ -0.4
CHD3-202ENST00000358181 MIER1Q8N108 512 aa12.51□□□□□ -0.41
CHD3-202ENST00000358181 DDRGK1Q96HY6 314 aa12.51□□□□□ -0.41
CHD3-202ENST00000358181 SAMD1Q6SPF0 538 aaPredicted RBP12.5□□□□□ -0.41
CHD3-202ENST00000358181 FBXW7Q969H0 707 aa12.5□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms