RNA–Protein interactions for RNA: ENST00000355480.9

COL18A1-202, Transcript of collagen type XVIII alpha 1 chain, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene COL18A1, Length 5,924 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-202ENST00000355480 EIF5BO60841 1220 aaKnown RBP23.94■■□□□ 1.42
COL18A1-202ENST00000355480 EIF4G2P78344 907 aaKnown RBP eCLIP23.93■■□□□ 1.421e-6■■■□□ 17
COL18A1-202ENST00000355480 CLIP1P30622 1438 aa23.91■■□□□ 1.42
COL18A1-202ENST00000355480 ZCCHC6Q5VYS8 1495 aaKnown RBP23.9■■□□□ 1.42
COL18A1-202ENST00000355480 DCAF1Q9Y4B6 1507 aa23.9■■□□□ 1.42
COL18A1-202ENST00000355480 ARXQ96QS3 562 aa23.9■■□□□ 1.42
COL18A1-202ENST00000355480 ARID4BQ4LE39 1312 aaPredicted RBP23.9■■□□□ 1.42
COL18A1-202ENST00000355480 RGL3Q3MIN7 710 aa23.89■■□□□ 1.41
COL18A1-202ENST00000355480 HAP1P54257 671 aaPredicted RBP23.87■■□□□ 1.41
COL18A1-202ENST00000355480 IRX6P78412 446 aaPredicted RBP23.86■■□□□ 1.41
COL18A1-202ENST00000355480 NBR1Q14596 966 aa23.84■■□□□ 1.41
COL18A1-202ENST00000355480 RSF1Q96T23 1441 aaPredicted RBP23.83■■□□□ 1.41
COL18A1-202ENST00000355480 CDK11BP21127 795 aaKnown RBP23.78■■□□□ 1.4
COL18A1-202ENST00000355480 CFAP53Q96M91 514 aa23.77■■□□□ 1.4
COL18A1-202ENST00000355480 PPM1GO15355 546 aaPredicted RBP23.76■■□□□ 1.39
COL18A1-202ENST00000355480 CFDP1Q9UEE9 299 aaPredicted RBP23.75■■□□□ 1.39
COL18A1-202ENST00000355480 MIER1Q8N108 512 aa23.73■■□□□ 1.39
COL18A1-202ENST00000355480 CDCA8Q53HL2 280 aa23.71■■□□□ 1.39
COL18A1-202ENST00000355480 KNSTRNQ9Y448 316 aa23.71■■□□□ 1.39
COL18A1-202ENST00000355480 SENP3-EIF4A1A0A087X0R7 540 aa23.65■■□□□ 1.38
COL18A1-202ENST00000355480 GOLGA3Q08378 1498 aa23.65■■□□□ 1.38
COL18A1-202ENST00000355480 NCLP19338 710 aaKnown RBP23.64■■□□□ 1.38
COL18A1-202ENST00000355480 LMOD2Q6P5Q4 547 aa23.64■■□□□ 1.38
COL18A1-202ENST00000355480 CARD11Q9BXL7 1154 aa23.64■■□□□ 1.38
COL18A1-202ENST00000355480 BECN1Q14457 450 aa23.63■■□□□ 1.37
COL18A1-202ENST00000355480 RB1CC1Q8TDY2 1594 aa23.62■■□□□ 1.37
COL18A1-202ENST00000355480 POGKQ9P215 609 aa23.61■■□□□ 1.37
COL18A1-202ENST00000355480 LAS1LQ9Y4W2 734 aaKnown RBP23.59■■□□□ 1.37
COL18A1-202ENST00000355480 EEA1Q15075 1411 aa23.59■■□□□ 1.37
COL18A1-202ENST00000355480 NEUROD2Q15784 382 aa23.58■■□□□ 1.37
COL18A1-202ENST00000355480 CEP162Q5TB80 1403 aa23.58■■□□□ 1.37
COL18A1-202ENST00000355480 FTSJ3Q8IY81 847 aaKnown RBP23.58■■□□□ 1.37
COL18A1-202ENST00000355480 MAPK8IP3Q9UPT6 1336 aa23.58■■□□□ 1.37
COL18A1-202ENST00000355480 DDRGK1Q96HY6 314 aa23.56■■□□□ 1.36
COL18A1-202ENST00000355480 WRNQ14191 1432 aaPredicted RBP eCLIP23.54■■□□□ 1.36
COL18A1-202ENST00000355480 KIF27Q86VH2 1401 aa23.54■■□□□ 1.36
COL18A1-202ENST00000355480 GOLGA6L22H0YM25 854 aa23.54■■□□□ 1.36
COL18A1-202ENST00000355480 CASC1Q6TDU7 716 aa23.54■■□□□ 1.36
COL18A1-202ENST00000355480 NUDCQ9Y266 331 aa23.53■■□□□ 1.36
COL18A1-202ENST00000355480 BAZ1BQ9UIG0 1483 aaKnown RBP23.53■■□□□ 1.36
COL18A1-202ENST00000355480 ERCC6Q03468 1493 aa23.51■■□□□ 1.35
COL18A1-202ENST00000355480 GLIPR1L2Q4G1C9 344 aa23.51■■□□□ 1.35
COL18A1-202ENST00000355480 NPHP1O15259 732 aa23.49■■□□□ 1.35
COL18A1-202ENST00000355480 TNNT2P45379 298 aaPredicted RBP23.49■■□□□ 1.35
COL18A1-202ENST00000355480 ZRSR1Q15695 479 aaKnown RBP23.48■■□□□ 1.35
COL18A1-202ENST00000355480 CCDC180Q9P1Z9 1646 aa23.45■■□□□ 1.35
COL18A1-202ENST00000355480 TRIM44Q96DX7 344 aaPredicted RBP23.44■■□□□ 1.34
COL18A1-202ENST00000355480 TPRNQ4KMQ1 711 aa23.43■■□□□ 1.34
COL18A1-202ENST00000355480 ANP32EQ9BTT0 268 aa23.42■■□□□ 1.34
COL18A1-202ENST00000355480 TULP1O00294 542 aaPredicted RBP23.41■■□□□ 1.34
COL18A1-202ENST00000355480 U2SURPO15042 1029 aaKnown RBP23.41■■□□□ 1.34
COL18A1-202ENST00000355480 FRAT1Q92837 279 aaPredicted RBP23.4■■□□□ 1.34
COL18A1-202ENST00000355480 CC2D1BQ5T0F9 858 aaKnown RBP23.4■■□□□ 1.34
COL18A1-202ENST00000355480 TRHP20396 242 aaPredicted RBP23.39■■□□□ 1.33
COL18A1-202ENST00000355480 SUPT16HQ9Y5B9 1047 aaKnown RBP23.38■■□□□ 1.33
COL18A1-202ENST00000355480 MYO15BQ96JP2 1530 aa23.38■■□□□ 1.33
COL18A1-202ENST00000355480 CEP164Q9UPV0 1460 aa23.37■■□□□ 1.33
COL18A1-202ENST00000355480 CCNB3Q8WWL7 1395 aa23.37■■□□□ 1.33
COL18A1-202ENST00000355480 OS9Q13438 667 aaPredicted RBP23.37■■□□□ 1.33
COL18A1-202ENST00000355480 SIN3AQ96ST3 1273 aa23.37■■□□□ 1.33
COL18A1-202ENST00000355480 MLECQ14165 292 aa23.37■■□□□ 1.33
COL18A1-202ENST00000355480 TAOK2Q9UL54 1235 aa23.35■■□□□ 1.33
COL18A1-202ENST00000355480 PTMAP06454 111 aaKnown RBP23.34■■□□□ 1.33
COL18A1-202ENST00000355480 TNIKQ9UKE5 1360 aa23.33■■□□□ 1.33
COL18A1-202ENST00000355480 KANK1Q14678 1352 aa23.32■■□□□ 1.32
COL18A1-202ENST00000355480 RGS3P49796 1198 aa23.32■■□□□ 1.32
COL18A1-202ENST00000355480 CHMP4BQ9H444 224 aaKnown RBP23.31■■□□□ 1.32
COL18A1-202ENST00000355480 SOX12O15370 315 aa23.31■■□□□ 1.32
COL18A1-202ENST00000355480 PNNQ9H307 717 aaKnown RBP23.31■■□□□ 1.32
COL18A1-202ENST00000355480 DCAF11Q8TEB1 546 aa23.3■■□□□ 1.32
COL18A1-202ENST00000355480 HDGFP51858 240 aaKnown RBP23.3■■□□□ 1.32
COL18A1-202ENST00000355480 TMF1P82094 1093 aa23.29■■□□□ 1.32
COL18A1-202ENST00000355480 FGD1P98174 961 aa23.28■■□□□ 1.32
COL18A1-202ENST00000355480 SRPK2P78362 688 aaKnown RBP23.27■■□□□ 1.32
COL18A1-202ENST00000355480 GOLGA2Q08379 1002 aa23.27■■□□□ 1.32
COL18A1-202ENST00000355480 MS4A1P11836 297 aa23.26■■□□□ 1.31
COL18A1-202ENST00000355480 EIF4G1Q04637 1599 aaKnown RBP23.26■■□□□ 1.31
COL18A1-202ENST00000355480 KCNJ4P48050 445 aa23.25■■□□□ 1.31
COL18A1-202ENST00000355480 SAFB2Q14151 953 aaKnown RBP eCLIP23.23■■□□□ 1.31
COL18A1-202ENST00000355480 NAP1L2Q9ULW6 460 aaPredicted RBP23.22■■□□□ 1.31
COL18A1-202ENST00000355480 NACADO15069 1562 aa23.21■■□□□ 1.31
COL18A1-202ENST00000355480 DNTTIP2Q5QJE6 756 aaKnown RBP23.2■■□□□ 1.3
COL18A1-202ENST00000355480 FHAD1B1AJZ9 1412 aa23.2■■□□□ 1.3
COL18A1-202ENST00000355480 GGT6Q6P531 493 aa23.18■■□□□ 1.3
COL18A1-202ENST00000355480 PPP4R2Q9NY27 417 aa23.18■■□□□ 1.3
COL18A1-202ENST00000355480 MORC1Q86VD1 984 aa23.17■■□□□ 1.3
COL18A1-202ENST00000355480 HSP90AB1P08238 724 aaKnown RBP23.17■■□□□ 1.3
COL18A1-202ENST00000355480 PLCB2Q00722 1185 aa23.17■■□□□ 1.3
COL18A1-202ENST00000355480 CARMIL1Q5VZK9 1371 aa23.15■■□□□ 1.3
COL18A1-202ENST00000355480 STK26Q9P289 416 aa23.13■■□□□ 1.29
COL18A1-202ENST00000355480 CUX2O14529 1486 aa23.12■■□□□ 1.29
COL18A1-202ENST00000355480 RTF1Q92541 710 aaKnown RBP23.11■■□□□ 1.29
COL18A1-202ENST00000355480 HDGFL2Q7Z4V5 671 aaPredicted RBP23.06■■□□□ 1.28
COL18A1-202ENST00000355480 GOLGA6L6A8MZA4 724 aa23.05■■□□□ 1.28
COL18A1-202ENST00000355480 PAK3O75914 559 aaPredicted RBP23.04■■□□□ 1.28
COL18A1-202ENST00000355480 GOLGA6L4A6NEF3 574 aa23.04■■□□□ 1.28
COL18A1-202ENST00000355480 PKD2Q13563 968 aa23.03■■□□□ 1.28
COL18A1-202ENST00000355480 B4GALNT3Q6L9W6 998 aa23.03■■□□□ 1.28
COL18A1-202ENST00000355480 BAZ1AQ9NRL2 1556 aaPredicted RBP23.02■■□□□ 1.28
COL18A1-202ENST00000355480 ISY1Q9ULR0 285 aaKnown RBP23.02■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms