RNA–Protein interactions for RNA: ENST00000344722.5

SMC4-201, Transcript of structural maintenance of chromosomes 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMC4, Length 5,356 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-201ENST00000344722 TSHZ2Q9NRE2 1034 aa23.94■■□□□ 1.42
SMC4-201ENST00000344722 TNIKQ9UKE5 1360 aa23.94■■□□□ 1.42
SMC4-201ENST00000344722 WDR43Q15061 677 aaKnown RBP eCLIP23.91■■□□□ 1.425e-20■■■■■ 85.2
SMC4-201ENST00000344722 LAS1LQ9Y4W2 734 aaKnown RBP23.89■■□□□ 1.41
SMC4-201ENST00000344722 ZNF777Q9ULD5 760 aaPredicted RBP23.85■■□□□ 1.41
SMC4-201ENST00000344722 CCER2I3L3R5 266 aa23.84■■□□□ 1.41
SMC4-201ENST00000344722 ARID3CA6NKF2 412 aa23.82■■□□□ 1.4
SMC4-201ENST00000344722 NAP1L5Q96NT1 182 aaPredicted RBP23.82■■□□□ 1.4
SMC4-201ENST00000344722 TNNT2P45379 298 aaPredicted RBP23.8■■□□□ 1.4
SMC4-201ENST00000344722 CHIC2Q9UKJ5 165 aa23.79■■□□□ 1.4
SMC4-201ENST00000344722 RSF1Q96T23 1441 aaPredicted RBP23.79■■□□□ 1.4
SMC4-201ENST00000344722 B4GALNT3Q6L9W6 998 aa23.77■■□□□ 1.4
SMC4-201ENST00000344722 GOLGA6L22H0YM25 854 aa23.77■■□□□ 1.4
SMC4-201ENST00000344722 MTUS2Q5JR59 1369 aa23.72■■□□□ 1.39
SMC4-201ENST00000344722 CEP164Q9UPV0 1460 aa23.68■■□□□ 1.38
SMC4-201ENST00000344722 TIMELESSQ9UNS1 1208 aa23.67■■□□□ 1.38
SMC4-201ENST00000344722 SLC24A1O60721 1099 aa23.67■■□□□ 1.38
SMC4-201ENST00000344722 L1TD1Q5T7N2 865 aaKnown RBP23.64■■□□□ 1.37
SMC4-201ENST00000344722 SIN3AQ96ST3 1273 aa23.6■■□□□ 1.37
SMC4-201ENST00000344722 KDM2AQ9Y2K7 1162 aa23.6■■□□□ 1.37
SMC4-201ENST00000344722 NCLP19338 710 aaKnown RBP23.59■■□□□ 1.37
SMC4-201ENST00000344722 MYH16Q9H6N6 1097 aa23.57■■□□□ 1.36
SMC4-201ENST00000344722 RB1CC1Q8TDY2 1594 aa23.56■■□□□ 1.36
SMC4-201ENST00000344722 RRP7BPQ9NSQ0 103 aa23.56■■□□□ 1.36
SMC4-201ENST00000344722 FBLN2P98095 1184 aa23.54■■□□□ 1.36
SMC4-201ENST00000344722 PTMAP06454 111 aaKnown RBP23.54■■□□□ 1.36
SMC4-201ENST00000344722 CCNB3Q8WWL7 1395 aa23.51■■□□□ 1.35
SMC4-201ENST00000344722 WRNQ14191 1432 aaPredicted RBP eCLIP23.51■■□□□ 1.35
SMC4-201ENST00000344722 DNTTIP2Q5QJE6 756 aaKnown RBP23.5■■□□□ 1.35
SMC4-201ENST00000344722 RGS3P49796 1198 aa23.49■■□□□ 1.35
SMC4-201ENST00000344722 IPO9Q96P70 1041 aaKnown RBP23.49■■□□□ 1.35
SMC4-201ENST00000344722 SENP3-EIF4A1A0A087X0R7 540 aa23.46■■□□□ 1.35
SMC4-201ENST00000344722 ZBTB4Q9P1Z0 1013 aaPredicted RBP23.44■■□□□ 1.34
SMC4-201ENST00000344722 TCERG1O14776 1098 aaKnown RBP23.43■■□□□ 1.34
SMC4-201ENST00000344722 TSPY4P0CV99 314 aa23.43■■□□□ 1.34
SMC4-201ENST00000344722 TSPY10P0CW01 314 aa23.43■■□□□ 1.34
SMC4-201ENST00000344722 CARD11Q9BXL7 1154 aa23.37■■□□□ 1.33
SMC4-201ENST00000344722 FANCIQ9NVI1 1328 aa23.37■■□□□ 1.33
SMC4-201ENST00000344722 GRWD1Q9BQ67 446 aaKnown RBP eCLIP23.37■■□□□ 1.332e-7■■■■□ 25.5
SMC4-201ENST00000344722 CHGAP10645 457 aaKnown RBP23.36■■□□□ 1.33
SMC4-201ENST00000344722 VPS8Q8N3P4 1428 aa23.36■■□□□ 1.33
SMC4-201ENST00000344722 SETD5Q9C0A6 1442 aa23.36■■□□□ 1.33
SMC4-201ENST00000344722 USP35Q9P2H5 1018 aa23.35■■□□□ 1.33
SMC4-201ENST00000344722 KNSTRNQ9Y448 316 aa23.35■■□□□ 1.33
SMC4-201ENST00000344722 MSNP26038 577 aaKnown RBP23.35■■□□□ 1.33
SMC4-201ENST00000344722 CDCA8Q53HL2 280 aa23.34■■□□□ 1.33
SMC4-201ENST00000344722 FTSJ3Q8IY81 847 aaKnown RBP23.33■■□□□ 1.33
SMC4-201ENST00000344722 CASC1Q6TDU7 716 aa23.33■■□□□ 1.32
SMC4-201ENST00000344722 PNNQ9H307 717 aaKnown RBP23.33■■□□□ 1.32
SMC4-201ENST00000344722 HSP90AB1P08238 724 aaKnown RBP23.32■■□□□ 1.32
SMC4-201ENST00000344722 HSCBQ8IWL3 235 aa23.3■■□□□ 1.32
SMC4-201ENST00000344722 CDK11BP21127 795 aaKnown RBP23.3■■□□□ 1.32
SMC4-201ENST00000344722 KIF27Q86VH2 1401 aa23.28■■□□□ 1.32
SMC4-201ENST00000344722 HSPA5P11021 654 aaKnown RBP23.28■■□□□ 1.32
SMC4-201ENST00000344722 CFAP53Q96M91 514 aa23.27■■□□□ 1.31
SMC4-201ENST00000344722 RSPH6AQ9H0K4 717 aa23.27■■□□□ 1.31
SMC4-201ENST00000344722 MS4A1P11836 297 aa23.25■■□□□ 1.31
SMC4-201ENST00000344722 SOGA1O94964 1423 aa23.24■■□□□ 1.31
SMC4-201ENST00000344722 PTMSP20962 102 aa23.23■■□□□ 1.31
SMC4-201ENST00000344722 NUDCQ9Y266 331 aa23.21■■□□□ 1.31
SMC4-201ENST00000344722 FRAT1Q92837 279 aaPredicted RBP23.21■■□□□ 1.31
SMC4-201ENST00000344722 RCAN3Q9UKA8 241 aa23.2■■□□□ 1.31
SMC4-201ENST00000344722 CHAF1AQ13111 956 aaPredicted RBP23.19■■□□□ 1.3
SMC4-201ENST00000344722 CHMP4BQ9H444 224 aaKnown RBP23.19■■□□□ 1.3
SMC4-201ENST00000344722 FHAD1B1AJZ9 1412 aa23.18■■□□□ 1.3
SMC4-201ENST00000344722 RAB3GAP2Q9H2M9 1393 aa23.17■■□□□ 1.3
SMC4-201ENST00000344722 GOLGA6L3A6NEY3 463 aa23.17■■□□□ 1.3
SMC4-201ENST00000344722 PPP1R15AO75807 674 aaPredicted RBP23.14■■□□□ 1.3
SMC4-201ENST00000344722 RGL3Q3MIN7 710 aa23.14■■□□□ 1.29
SMC4-201ENST00000344722 CC2D1BQ5T0F9 858 aaKnown RBP23.14■■□□□ 1.29
SMC4-201ENST00000344722 GBP4Q96PP9 640 aa23.13■■□□□ 1.29
SMC4-201ENST00000344722 ZRSR1Q15695 479 aaKnown RBP23.12■■□□□ 1.29
SMC4-201ENST00000344722 GSE1Q14687 1217 aa23.11■■□□□ 1.29
SMC4-201ENST00000344722 ARID4BQ4LE39 1312 aaPredicted RBP23.11■■□□□ 1.29
SMC4-201ENST00000344722 PLCB2Q00722 1185 aa23.1■■□□□ 1.29
SMC4-201ENST00000344722 STAG3Q9UJ98 1225 aa23.1■■□□□ 1.29
SMC4-201ENST00000344722 SPRYD3Q8NCJ5 442 aa23.1■■□□□ 1.29
SMC4-201ENST00000344722 NEUROD2Q15784 382 aa23.09■■□□□ 1.29
SMC4-201ENST00000344722 HSP90AA2PQ14568 343 aaPredicted RBP23.09■■□□□ 1.29
SMC4-201ENST00000344722 SLKQ9H2G2 1235 aaPredicted RBP23.07■■□□□ 1.28
SMC4-201ENST00000344722 KCNH8Q96L42 1107 aa23.07■■□□□ 1.28
SMC4-201ENST00000344722 GOLGA6L6A8MZA4 724 aa23.06■■□□□ 1.28
SMC4-201ENST00000344722 KANK4Q5T7N3 995 aaPredicted RBP23.06■■□□□ 1.28
SMC4-201ENST00000344722 GZF1Q9H116 711 aaPredicted RBP23.06■■□□□ 1.28
SMC4-201ENST00000344722 RALBP1Q15311 655 aa23.06■■□□□ 1.28
SMC4-201ENST00000344722 KTN1Q86UP2 1357 aaKnown RBP23.05■■□□□ 1.28
SMC4-201ENST00000344722 DHX57Q6P158 1386 aaKnown RBP23.05■■□□□ 1.28
SMC4-201ENST00000344722 CFAP44Q96MT7 982 aa23.05■■□□□ 1.28
SMC4-201ENST00000344722 MAPK8IP3Q9UPT6 1336 aa23.04■■□□□ 1.28
SMC4-201ENST00000344722 ARHGAP35Q9NRY4 1499 aa23.04■■□□□ 1.28
SMC4-201ENST00000344722 BAZ1AQ9NRL2 1556 aaPredicted RBP23.03■■□□□ 1.28
SMC4-201ENST00000344722 CFDP1Q9UEE9 299 aaPredicted RBP23.03■■□□□ 1.28
SMC4-201ENST00000344722 TMF1P82094 1093 aa23.03■■□□□ 1.28
SMC4-201ENST00000344722 TPRNQ4KMQ1 711 aa23.02■■□□□ 1.28
SMC4-201ENST00000344722 PDE3BQ13370 1112 aa23■■□□□ 1.27
SMC4-201ENST00000344722 PDE4AP27815 886 aa22.99■■□□□ 1.27
SMC4-201ENST00000344722 NRDCO43847 1150 aa22.98■■□□□ 1.27
SMC4-201ENST00000344722 KIAA2012Q0VF49 1180 aa22.97■■□□□ 1.27
SMC4-201ENST00000344722 CCDC88BA6NC98 1476 aa22.95■■□□□ 1.26
SMC4-201ENST00000344722 VSIG10Q8N0Z9 540 aa22.95■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 66.6 ms