RNA–Protein interactions for RNA: ENST00000343200.9

VCAN-203, Transcript of versican, humanhuman

TSL 1 (best) BASIC

Gene VCAN, Length 9,455 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-203ENST00000343200 APPP05067 770 aa8.08□□□□□ -1.12
VCAN-203ENST00000343200 HNRNPUQ00839 825 aaKnown RBP eCLIP8.07□□□□□ -1.12
VCAN-203ENST00000343200 USP35Q9P2H5 1018 aa8.06□□□□□ -1.12
VCAN-203ENST00000343200 CROCCQ5TZA2 2017 aa8.06□□□□□ -1.12
VCAN-203ENST00000343200 MYH9P35579 1960 aaKnown RBP8.05□□□□□ -1.12
VCAN-203ENST00000343200 GOLGA6L1Q8N7Z2 621 aa8.05□□□□□ -1.12
VCAN-203ENST00000343200 PNNQ9H307 717 aaKnown RBP8.05□□□□□ -1.12
VCAN-203ENST00000343200 CASC1Q6TDU7 716 aa8.04□□□□□ -1.12
VCAN-203ENST00000343200 PODXL2Q9NZ53 605 aa8.03□□□□□ -1.12
VCAN-203ENST00000343200 ARID4BQ4LE39 1312 aaPredicted RBP8.03□□□□□ -1.12
VCAN-203ENST00000343200 LAS1LQ9Y4W2 734 aaKnown RBP8.03□□□□□ -1.12
VCAN-203ENST00000343200 FAM50AQ14320 339 aaKnown RBP8.02□□□□□ -1.13
VCAN-203ENST00000343200 PKNOX2Q96KN3 472 aa8.01□□□□□ -1.13
VCAN-203ENST00000343200 KIAA2012Q0VF49 1180 aa8.01□□□□□ -1.13
VCAN-203ENST00000343200 LOC105371045A0A1W2PR82 267 aa8□□□□□ -1.13
VCAN-203ENST00000343200 GOLGA6L4A6NEF3 574 aa7.99□□□□□ -1.13
VCAN-203ENST00000343200 MYO18AQ92614 2054 aaKnown RBP7.98□□□□□ -1.13
VCAN-203ENST00000343200 GOLGA6L3A6NEY3 463 aa7.98□□□□□ -1.13
VCAN-203ENST00000343200 NOC3LQ8WTT2 800 aaKnown RBP7.98□□□□□ -1.13
VCAN-203ENST00000343200 CHIC1Q5VXU3 224 aa7.98□□□□□ -1.13
VCAN-203ENST00000343200 VSIG10Q8N0Z9 540 aa7.98□□□□□ -1.13
VCAN-203ENST00000343200 TRIM52Q96A61 297 aa7.97□□□□□ -1.13
VCAN-203ENST00000343200 TONSLQ96HA7 1378 aa7.96□□□□□ -1.14
VCAN-203ENST00000343200 GOLGA4Q13439 2230 aaKnown RBP7.96□□□□□ -1.14
VCAN-203ENST00000343200 AK9Q5TCS8 1911 aa7.96□□□□□ -1.14
VCAN-203ENST00000343200 DRC7Q8IY82 874 aa7.96□□□□□ -1.14
VCAN-203ENST00000343200 ARID3AQ99856 593 aa7.96□□□□□ -1.14
VCAN-203ENST00000343200 NOM1Q5C9Z4 860 aaKnown RBP7.96□□□□□ -1.14
VCAN-203ENST00000343200 FAM9BQ8IZU0 186 aa7.92□□□□□ -1.14
VCAN-203ENST00000343200 TMC1Q8TDI8 760 aa7.91□□□□□ -1.14
VCAN-203ENST00000343200 MICAL3Q7RTP6 2002 aa7.91□□□□□ -1.14
VCAN-203ENST00000343200 PLCB2Q00722 1185 aa7.91□□□□□ -1.14
VCAN-203ENST00000343200 SYAP1Q96A49 352 aaPredicted RBP7.91□□□□□ -1.14
VCAN-203ENST00000343200 HSP90AB1P08238 724 aaKnown RBP7.91□□□□□ -1.14
VCAN-203ENST00000343200 PRKCSHP14314 528 aaPredicted RBP7.91□□□□□ -1.14
VCAN-203ENST00000343200 HSCBQ8IWL3 235 aa7.91□□□□□ -1.14
VCAN-203ENST00000343200 ZNF771Q7L3S4 317 aaPredicted RBP7.9□□□□□ -1.14
VCAN-203ENST00000343200 MTERF4Q7Z6M4 381 aaKnown RBP7.9□□□□□ -1.14
VCAN-203ENST00000343200 STK11IPQ8N1F8 1099 aa7.9□□□□□ -1.15
VCAN-203ENST00000343200 TEX35Q5T0J7 233 aa7.89□□□□□ -1.15
VCAN-203ENST00000343200 PHF14O94880 888 aa7.89□□□□□ -1.15
VCAN-203ENST00000343200 WDR43Q15061 677 aaKnown RBP eCLIP7.89□□□□□ -1.15
VCAN-203ENST00000343200 GBP4Q96PP9 640 aa7.89□□□□□ -1.15
VCAN-203ENST00000343200 CSRNP3Q8WYN3 585 aa7.89□□□□□ -1.15
VCAN-203ENST00000343200 HTATSF1O43719 755 aaKnown RBP7.88□□□□□ -1.15
VCAN-203ENST00000343200 TAF3Q5VWG9 929 aa7.87□□□□□ -1.15
VCAN-203ENST00000343200 GPS2Q13227 327 aa7.87□□□□□ -1.15
VCAN-203ENST00000343200 IRX6P78412 446 aaPredicted RBP7.87□□□□□ -1.15
VCAN-203ENST00000343200 PPP4R2Q9NY27 417 aa7.86□□□□□ -1.15
VCAN-203ENST00000343200 CWC15Q9P013 229 aaKnown RBP7.86□□□□□ -1.15
VCAN-203ENST00000343200 BAZ2BQ9UIF8 2168 aaKnown RBP7.86□□□□□ -1.15
VCAN-203ENST00000343200 MRS2Q9HD23 443 aa7.85□□□□□ -1.15
VCAN-203ENST00000343200 SUPT16HQ9Y5B9 1047 aaKnown RBP7.85□□□□□ -1.15
VCAN-203ENST00000343200 FTSJ3Q8IY81 847 aaKnown RBP7.85□□□□□ -1.15
VCAN-203ENST00000343200 ANKRD12Q6UB98 2062 aa7.84□□□□□ -1.15
VCAN-203ENST00000343200 MAP7D2Q96T17 732 aa7.84□□□□□ -1.15
VCAN-203ENST00000343200 CCDC66A2RUB6 948 aa7.84□□□□□ -1.15
VCAN-203ENST00000343200 RBM19Q9Y4C8 960 aaKnown RBP7.83□□□□□ -1.16
VCAN-203ENST00000343200 CFAP44Q96MT7 982 aa7.83□□□□□ -1.16
VCAN-203ENST00000343200 TCHHQ07283 1943 aa7.82□□□□□ -1.16
VCAN-203ENST00000343200 DDX10Q13206 875 aaKnown RBP7.82□□□□□ -1.16
VCAN-203ENST00000343200 TPRNQ4KMQ1 711 aa7.82□□□□□ -1.16
VCAN-203ENST00000343200 NEFHP12036 1026 aa7.82□□□□□ -1.16
VCAN-203ENST00000343200 RRP12Q5JTH9 1297 aaKnown RBP7.82□□□□□ -1.16
VCAN-203ENST00000343200 MIER1Q8N108 512 aa7.82□□□□□ -1.16
VCAN-203ENST00000343200 CHMP4BQ9H444 224 aaKnown RBP7.81□□□□□ -1.16
VCAN-203ENST00000343200 CALD1Q05682 793 aaKnown RBP7.81□□□□□ -1.16
VCAN-203ENST00000343200 MYH11P35749 1972 aa7.81□□□□□ -1.16
VCAN-203ENST00000343200 PDZRN4Q6ZMN7 1036 aaPredicted RBP7.81□□□□□ -1.16
VCAN-203ENST00000343200 TPM4P67936 248 aa7.8□□□□□ -1.16
VCAN-203ENST00000343200 RDXP35241 583 aaKnown RBP7.8□□□□□ -1.16
VCAN-203ENST00000343200 CCDC70Q6NSX1 233 aa7.79□□□□□ -1.16
VCAN-203ENST00000343200 MEX3CQ5U5Q3 659 aaKnown RBP7.79□□□□□ -1.16
VCAN-203ENST00000343200 MCCP23508 829 aa7.79□□□□□ -1.16
VCAN-203ENST00000343200 CSPP1Q1MSJ5 1256 aa7.79□□□□□ -1.16
VCAN-203ENST00000343200 KAT6AQ92794 2004 aa7.78□□□□□ -1.16
VCAN-203ENST00000343200 DDX11L8A8MPP1 907 aa7.78□□□□□ -1.16
VCAN-203ENST00000343200 TIMELESSQ9UNS1 1208 aa7.78□□□□□ -1.16
VCAN-203ENST00000343200 HMMRO75330 724 aa7.78□□□□□ -1.16
VCAN-203ENST00000343200 MYH6P13533 1939 aa7.77□□□□□ -1.17
VCAN-203ENST00000343200 GZF1Q9H116 711 aaPredicted RBP7.77□□□□□ -1.17
VCAN-203ENST00000343200 CCDC191Q8NCU4 936 aa7.77□□□□□ -1.17
VCAN-203ENST00000343200 FGD1P98174 961 aa7.76□□□□□ -1.17
VCAN-203ENST00000343200 IPO9Q96P70 1041 aaKnown RBP7.76□□□□□ -1.17
VCAN-203ENST00000343200 SALL2Q9Y467 1007 aaPredicted RBP7.76□□□□□ -1.17
VCAN-203ENST00000343200 HMGB1P09429 215 aaKnown RBP7.75□□□□□ -1.17
VCAN-203ENST00000343200 NUMA1Q14980 2115 aa7.75□□□□□ -1.17
VCAN-203ENST00000343200 CCDC34Q96HJ3 373 aa7.74□□□□□ -1.17
VCAN-203ENST00000343200 GSE1Q14687 1217 aa7.74□□□□□ -1.17
VCAN-203ENST00000343200 ZBTB7CA1YPR0 619 aa7.74□□□□□ -1.17
VCAN-203ENST00000343200 HSP90B1P14625 803 aaKnown RBP7.74□□□□□ -1.17
VCAN-203ENST00000343200 RGS3P49796 1198 aa7.74□□□□□ -1.17
VCAN-203ENST00000343200 MS4A1P11836 297 aa7.74□□□□□ -1.17
VCAN-203ENST00000343200 FAM13BQ9NYF5 915 aa7.74□□□□□ -1.17
VCAN-203ENST00000343200 RRP9O43818 475 aaKnown RBP7.74□□□□□ -1.17
VCAN-203ENST00000343200 PATL2C9JE40 543 aaKnown RBP7.73□□□□□ -1.17
VCAN-203ENST00000343200 DYDC1Q8WWB3 177 aa7.73□□□□□ -1.17
VCAN-203ENST00000343200 GNL2Q13823 731 aaKnown RBP7.73□□□□□ -1.17
VCAN-203ENST00000343200 KIF16BQ96L93 1317 aa7.73□□□□□ -1.17
VCAN-203ENST00000343200 TPM3P06753 285 aa7.72□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms