RNA–Protein interactions for RNA: ENST00000322213.8

SMC1A-201, Transcript of structural maintenance of chromosomes 1A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMC1A, Length 9,784 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1A-201ENST00000322213 IRX6P78412 446 aaPredicted RBP9.35□□□□□ -0.91
SMC1A-201ENST00000322213 PODXL2Q9NZ53 605 aa9.34□□□□□ -0.91
SMC1A-201ENST00000322213 UBE2Q2Q8WVN8 375 aa9.34□□□□□ -0.91
SMC1A-201ENST00000322213 GOLGA6L2Q8N9W4 650 aaPredicted RBP9.33□□□□□ -0.92
SMC1A-201ENST00000322213 L1TD1Q5T7N2 865 aaKnown RBP9.31□□□□□ -0.92
SMC1A-201ENST00000322213 CDK11BP21127 795 aaKnown RBP9.31□□□□□ -0.92
SMC1A-201ENST00000322213 MRS2Q9HD23 443 aa9.31□□□□□ -0.92
SMC1A-201ENST00000322213 SLC4A1APQ9BWU0 796 aaKnown RBP9.31□□□□□ -0.92
SMC1A-201ENST00000322213 ZNF326Q5BKZ1 582 aaKnown RBP9.3□□□□□ -0.92
SMC1A-201ENST00000322213 CEP164Q9UPV0 1460 aa9.3□□□□□ -0.92
SMC1A-201ENST00000322213 LAS1LQ9Y4W2 734 aaKnown RBP9.29□□□□□ -0.92
SMC1A-201ENST00000322213 BAZ1AQ9NRL2 1556 aaPredicted RBP9.28□□□□□ -0.92
SMC1A-201ENST00000322213 ANO8Q9HCE9 1232 aaPredicted RBP9.28□□□□□ -0.92
SMC1A-201ENST00000322213 TMC1Q8TDI8 760 aa9.28□□□□□ -0.92
SMC1A-201ENST00000322213 GOLGA6L22H0YM25 854 aa9.28□□□□□ -0.92
SMC1A-201ENST00000322213 USP35Q9P2H5 1018 aa9.26□□□□□ -0.93
SMC1A-201ENST00000322213 FANCIQ9NVI1 1328 aa9.26□□□□□ -0.93
SMC1A-201ENST00000322213 AK9Q5TCS8 1911 aa9.24□□□□□ -0.93
SMC1A-201ENST00000322213 WIZO95785 1651 aa9.24□□□□□ -0.93
SMC1A-201ENST00000322213 TNIKQ9UKE5 1360 aa9.24□□□□□ -0.93
SMC1A-201ENST00000322213 CCER2I3L3R5 266 aa9.24□□□□□ -0.93
SMC1A-201ENST00000322213 HSP90AA2PQ14568 343 aaPredicted RBP9.24□□□□□ -0.93
SMC1A-201ENST00000322213 IPO9Q96P70 1041 aaKnown RBP9.21□□□□□ -0.93
SMC1A-201ENST00000322213 MSNP26038 577 aaKnown RBP9.21□□□□□ -0.94
SMC1A-201ENST00000322213 VSIG10Q8N0Z9 540 aa9.2□□□□□ -0.94
SMC1A-201ENST00000322213 DNTTIP2Q5QJE6 756 aaKnown RBP9.2□□□□□ -0.94
SMC1A-201ENST00000322213 SALL2Q9Y467 1007 aaPredicted RBP9.19□□□□□ -0.94
SMC1A-201ENST00000322213 EIF4G2P78344 907 aaKnown RBP eCLIP9.19□□□□□ -0.94
SMC1A-201ENST00000322213 NACADO15069 1562 aa9.18□□□□□ -0.94
SMC1A-201ENST00000322213 B4GALNT3Q6L9W6 998 aa9.18□□□□□ -0.94
SMC1A-201ENST00000322213 CHAF1AQ13111 956 aaPredicted RBP9.18□□□□□ -0.94
SMC1A-201ENST00000322213 PTMAP06454 111 aaKnown RBP9.18□□□□□ -0.94
SMC1A-201ENST00000322213 PNNQ9H307 717 aaKnown RBP9.17□□□□□ -0.94
SMC1A-201ENST00000322213 ABCC8Q09428 1581 aa9.17□□□□□ -0.94
SMC1A-201ENST00000322213 PTMSP20962 102 aa9.16□□□□□ -0.94
SMC1A-201ENST00000322213 RSF1Q96T23 1441 aaPredicted RBP9.15□□□□□ -0.94
SMC1A-201ENST00000322213 WDR43Q15061 677 aaKnown RBP eCLIP9.15□□□□□ -0.943e-7■■□□□ 12
SMC1A-201ENST00000322213 WRNQ14191 1432 aaPredicted RBP eCLIP9.15□□□□□ -0.95
SMC1A-201ENST00000322213 VPS8Q8N3P4 1428 aa9.14□□□□□ -0.95
SMC1A-201ENST00000322213 CCNB3Q8WWL7 1395 aa9.13□□□□□ -0.95
SMC1A-201ENST00000322213 MYH16Q9H6N6 1097 aa9.13□□□□□ -0.95
SMC1A-201ENST00000322213 A0A0U1RQG5 324 aaPredicted RBP9.11□□□□□ -0.95
SMC1A-201ENST00000322213 TCERG1O14776 1098 aaKnown RBP9.11□□□□□ -0.95
SMC1A-201ENST00000322213 KIF21BO75037 1637 aa9.11□□□□□ -0.95
SMC1A-201ENST00000322213 HIRIP3Q9BW71 556 aaPredicted RBP9.11□□□□□ -0.95
SMC1A-201ENST00000322213 BAZ1BQ9UIG0 1483 aaKnown RBP9.1□□□□□ -0.95
SMC1A-201ENST00000322213 CASC1Q6TDU7 716 aa9.09□□□□□ -0.95
SMC1A-201ENST00000322213 GSE1Q14687 1217 aa9.09□□□□□ -0.95
SMC1A-201ENST00000322213 TIMELESSQ9UNS1 1208 aa9.08□□□□□ -0.96
SMC1A-201ENST00000322213 SETD5Q9C0A6 1442 aa9.08□□□□□ -0.96
SMC1A-201ENST00000322213 ARHGAP35Q9NRY4 1499 aa9.08□□□□□ -0.96
SMC1A-201ENST00000322213 HSCBQ8IWL3 235 aa9.08□□□□□ -0.96
SMC1A-201ENST00000322213 MTUS2Q5JR59 1369 aa9.08□□□□□ -0.96
SMC1A-201ENST00000322213 FHAD1B1AJZ9 1412 aa9.07□□□□□ -0.96
SMC1A-201ENST00000322213 GOLGA6L3A6NEY3 463 aa9.07□□□□□ -0.96
SMC1A-201ENST00000322213 GOLGA6L6A8MZA4 724 aa9.06□□□□□ -0.96
SMC1A-201ENST00000322213 POLR1AO95602 1720 aaPredicted RBP9.05□□□□□ -0.96
SMC1A-201ENST00000322213 HSP90AB1P08238 724 aaKnown RBP9.05□□□□□ -0.96
SMC1A-201ENST00000322213 TOP2AP11388 1531 aaKnown RBP9.05□□□□□ -0.96
SMC1A-201ENST00000322213 RRP9O43818 475 aaKnown RBP9.05□□□□□ -0.96
SMC1A-201ENST00000322213 GBP4Q96PP9 640 aa9.04□□□□□ -0.96
SMC1A-201ENST00000322213 ARID4BQ4LE39 1312 aaPredicted RBP9.04□□□□□ -0.96
SMC1A-201ENST00000322213 FTSJ3Q8IY81 847 aaKnown RBP9.04□□□□□ -0.96
SMC1A-201ENST00000322213 PRDM2Q13029 1718 aa9.03□□□□□ -0.96
SMC1A-201ENST00000322213 RGS3P49796 1198 aa9.03□□□□□ -0.96
SMC1A-201ENST00000322213 VIRMAQ69YN4 1812 aaKnown RBP9.02□□□□□ -0.97
SMC1A-201ENST00000322213 ZBED9Q6R2W3 1325 aa9.02□□□□□ -0.97
SMC1A-201ENST00000322213 KIAA2012Q0VF49 1180 aa9.01□□□□□ -0.97
SMC1A-201ENST00000322213 PDE4CQ08493 712 aa9□□□□□ -0.97
SMC1A-201ENST00000322213 SUPT6HQ7KZ85 1726 aaKnown RBP9□□□□□ -0.97
SMC1A-201ENST00000322213 KIF27Q86VH2 1401 aa9□□□□□ -0.97
SMC1A-201ENST00000322213 DDX11L8A8MPP1 907 aa9□□□□□ -0.97
SMC1A-201ENST00000322213 SMARCA4P51532 1647 aa9□□□□□ -0.97
SMC1A-201ENST00000322213 IL27Q8NEV9 243 aa8.99□□□□□ -0.97
SMC1A-201ENST00000322213 NRDCO43847 1150 aa8.99□□□□□ -0.97
SMC1A-201ENST00000322213 RAB3GAP2Q9H2M9 1393 aa8.99□□□□□ -0.97
SMC1A-201ENST00000322213 ZRSR1Q15695 479 aaKnown RBP8.98□□□□□ -0.97
SMC1A-201ENST00000322213 MTERF4Q7Z6M4 381 aaKnown RBP8.98□□□□□ -0.97
SMC1A-201ENST00000322213 TCHHQ07283 1943 aa8.98□□□□□ -0.97
SMC1A-201ENST00000322213 CFAP65Q6ZU64 1925 aaKnown RBP8.98□□□□□ -0.97
SMC1A-201ENST00000322213 P3H3Q8IVL6 736 aa8.98□□□□□ -0.97
SMC1A-201ENST00000322213 GZF1Q9H116 711 aaPredicted RBP8.97□□□□□ -0.97
SMC1A-201ENST00000322213 CFAP44Q96MT7 982 aa8.97□□□□□ -0.97
SMC1A-201ENST00000322213 TNNT3P45378 269 aaPredicted RBP8.97□□□□□ -0.97
SMC1A-201ENST00000322213 SYAP1Q96A49 352 aaPredicted RBP8.97□□□□□ -0.97
SMC1A-201ENST00000322213 PHLDB1Q86UU1 1377 aa8.97□□□□□ -0.97
SMC1A-201ENST00000322213 RCAN3Q9UKA8 241 aa8.97□□□□□ -0.97
SMC1A-201ENST00000322213 MS4A1P11836 297 aa8.96□□□□□ -0.97
SMC1A-201ENST00000322213 AMER1Q5JTC6 1135 aaPredicted RBP8.96□□□□□ -0.97
SMC1A-201ENST00000322213 FAM43AQ8N2R8 423 aa8.96□□□□□ -0.97
SMC1A-201ENST00000322213 CHMP4BQ9H444 224 aaKnown RBP8.96□□□□□ -0.97
SMC1A-201ENST00000322213 NUDCQ9Y266 331 aa8.96□□□□□ -0.97
SMC1A-201ENST00000322213 PHF14O94880 888 aa8.96□□□□□ -0.98
SMC1A-201ENST00000322213 UNC13AQ9UPW8 1703 aa8.96□□□□□ -0.98
SMC1A-201ENST00000322213 CCDC88BA6NC98 1476 aa8.96□□□□□ -0.98
SMC1A-201ENST00000322213 MAP7D2Q96T17 732 aa8.95□□□□□ -0.98
SMC1A-201ENST00000322213 ARID3AQ99856 593 aa8.95□□□□□ -0.98
SMC1A-201ENST00000322213 PDZRN4Q6ZMN7 1036 aaPredicted RBP8.95□□□□□ -0.98
SMC1A-201ENST00000322213 KNSTRNQ9Y448 316 aa8.95□□□□□ -0.98
SMC1A-201ENST00000322213 KTN1Q86UP2 1357 aaKnown RBP8.95□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms