RNA–Protein interactions for RNA: ENST00000320081.9

CLIP4-201, Transcript of CAP-Gly domain containing linker protein family member 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP4, Length 4,293 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP4-201ENST00000320081 NBR1Q14596 966 aa22.47■■□□□ 1.19
CLIP4-201ENST00000320081 SUPT16HQ9Y5B9 1047 aaKnown RBP22.46■■□□□ 1.19
CLIP4-201ENST00000320081 CHMP7Q8WUX9 453 aaPredicted RBP22.44■■□□□ 1.18
CLIP4-201ENST00000320081 KCNH8Q96L42 1107 aa22.44■■□□□ 1.18
CLIP4-201ENST00000320081 EEA1Q15075 1411 aa22.43■■□□□ 1.18
CLIP4-201ENST00000320081 EIF4G2P78344 907 aaKnown RBP eCLIP22.43■■□□□ 1.18
CLIP4-201ENST00000320081 CCDC136Q96JN2 1154 aa22.43■■□□□ 1.18
CLIP4-201ENST00000320081 CEP164Q9UPV0 1460 aa22.41■■□□□ 1.18
CLIP4-201ENST00000320081 TSPY4P0CV99 314 aa22.4■■□□□ 1.18
CLIP4-201ENST00000320081 TSPY10P0CW01 314 aa22.4■■□□□ 1.18
CLIP4-201ENST00000320081 ANP32AP39687 249 aaKnown RBP22.39■■□□□ 1.17
CLIP4-201ENST00000320081 FOXD1Q16676 465 aa22.39■■□□□ 1.17
CLIP4-201ENST00000320081 NACADO15069 1562 aa22.37■■□□□ 1.17
CLIP4-201ENST00000320081 KIF27Q86VH2 1401 aa22.36■■□□□ 1.17
CLIP4-201ENST00000320081 RUSC2Q8N2Y8 1516 aa22.35■■□□□ 1.17
CLIP4-201ENST00000320081 BAZ1AQ9NRL2 1556 aaPredicted RBP22.35■■□□□ 1.17
CLIP4-201ENST00000320081 CCNB3Q8WWL7 1395 aa22.3■■□□□ 1.16
CLIP4-201ENST00000320081 WIZO95785 1651 aa22.29■■□□□ 1.16
CLIP4-201ENST00000320081 CFDP1Q9UEE9 299 aaPredicted RBP22.24■■□□□ 1.15
CLIP4-201ENST00000320081 ARXQ96QS3 562 aa22.24■■□□□ 1.15
CLIP4-201ENST00000320081 CUX2O14529 1486 aa22.22■■□□□ 1.15
CLIP4-201ENST00000320081 CARMIL1Q5VZK9 1371 aa22.2■■□□□ 1.15
CLIP4-201ENST00000320081 B4GALNT3Q6L9W6 998 aa22.19■■□□□ 1.14
CLIP4-201ENST00000320081 VPS8Q8N3P4 1428 aa22.19■■□□□ 1.14
CLIP4-201ENST00000320081 PLEKHD1A6NEE1 506 aa22.16■■□□□ 1.14
CLIP4-201ENST00000320081 PLEKHG5O94827 1062 aa22.15■■□□□ 1.14
CLIP4-201ENST00000320081 STAG3Q9UJ98 1225 aa22.15■■□□□ 1.14
CLIP4-201ENST00000320081 CARD11Q9BXL7 1154 aa22.14■■□□□ 1.13
CLIP4-201ENST00000320081 ZBTB47Q9UFB7 747 aaPredicted RBP22.12■■□□□ 1.13
CLIP4-201ENST00000320081 WDR43Q15061 677 aaKnown RBP eCLIP22.11■■□□□ 1.13
CLIP4-201ENST00000320081 TDRD9Q8NDG6 1382 aaKnown RBP22.11■■□□□ 1.13
CLIP4-201ENST00000320081 RAB3GAP2Q9H2M9 1393 aa22.09■■□□□ 1.13
CLIP4-201ENST00000320081 NEUROD2Q15784 382 aa22.09■■□□□ 1.13
CLIP4-201ENST00000320081 RAPGEF2Q9Y4G8 1499 aa22.09■■□□□ 1.13
CLIP4-201ENST00000320081 NEFMP07197 916 aa22.08■■□□□ 1.13
CLIP4-201ENST00000320081 ANP32EQ9BTT0 268 aa22.08■■□□□ 1.12
CLIP4-201ENST00000320081 TNNT2P45379 298 aaPredicted RBP22.05■■□□□ 1.12
CLIP4-201ENST00000320081 CC2D1BQ5T0F9 858 aaKnown RBP22.04■■□□□ 1.12
CLIP4-201ENST00000320081 HSPA5P11021 654 aaKnown RBP22.03■■□□□ 1.12
CLIP4-201ENST00000320081 NPM1P06748 294 aaKnown RBP eCLIP22.01■■□□□ 1.11
CLIP4-201ENST00000320081 DCAF11Q8TEB1 546 aa22.01■■□□□ 1.11
CLIP4-201ENST00000320081 EIF5BO60841 1220 aaKnown RBP21.99■■□□□ 1.11
CLIP4-201ENST00000320081 SETD5Q9C0A6 1442 aa21.96■■□□□ 1.11
CLIP4-201ENST00000320081 EIF4G1Q04637 1599 aaKnown RBP21.95■■□□□ 1.11
CLIP4-201ENST00000320081 ESF1Q9H501 851 aaKnown RBP21.94■■□□□ 1.1
CLIP4-201ENST00000320081 PPM1GO15355 546 aaPredicted RBP21.91■■□□□ 1.1
CLIP4-201ENST00000320081 FHOD3Q2V2M9 1422 aa21.91■■□□□ 1.1
CLIP4-201ENST00000320081 PPP1R15AO75807 674 aaPredicted RBP21.9■■□□□ 1.1
CLIP4-201ENST00000320081 HSP90AA1P07900 732 aaKnown RBP21.9■■□□□ 1.1
CLIP4-201ENST00000320081 RGS3P49796 1198 aa21.89■■□□□ 1.09
CLIP4-201ENST00000320081 PKD2Q13563 968 aa21.89■■□□□ 1.09
CLIP4-201ENST00000320081 LAS1LQ9Y4W2 734 aaKnown RBP21.89■■□□□ 1.09
CLIP4-201ENST00000320081 RBM19Q9Y4C8 960 aaKnown RBP21.87■■□□□ 1.09
CLIP4-201ENST00000320081 L3MBTL2Q969R5 705 aa21.86■■□□□ 1.09
CLIP4-201ENST00000320081 FHAD1B1AJZ9 1412 aa21.86■■□□□ 1.09
CLIP4-201ENST00000320081 GOLGA6L2Q8N9W4 650 aaPredicted RBP21.85■■□□□ 1.09
CLIP4-201ENST00000320081 DHX57Q6P158 1386 aaKnown RBP21.85■■□□□ 1.09
CLIP4-201ENST00000320081 KNSTRNQ9Y448 316 aa21.85■■□□□ 1.09
CLIP4-201ENST00000320081 MPHOSPH9Q99550 1183 aa21.84■■□□□ 1.09
CLIP4-201ENST00000320081 SAFB2Q14151 953 aaKnown RBP eCLIP21.83■■□□□ 1.08
CLIP4-201ENST00000320081 TSHZ2Q9NRE2 1034 aa21.81■■□□□ 1.08
CLIP4-201ENST00000320081 PPP4R2Q9NY27 417 aa21.81■■□□□ 1.08
CLIP4-201ENST00000320081 TOP2AP11388 1531 aaKnown RBP21.8■■□□□ 1.08
CLIP4-201ENST00000320081 FRAT1Q92837 279 aaPredicted RBP21.8■■□□□ 1.08
CLIP4-201ENST00000320081 UPF2Q9HAU5 1272 aaKnown RBP21.78■■□□□ 1.08
CLIP4-201ENST00000320081 RTN4Q9NQC3 1192 aaKnown RBP21.78■■□□□ 1.08
CLIP4-201ENST00000320081 ARHGAP35Q9NRY4 1499 aa21.76■■□□□ 1.07
CLIP4-201ENST00000320081 ZBTB7CA1YPR0 619 aa21.73■■□□□ 1.07
CLIP4-201ENST00000320081 ATAD2BQ9ULI0 1458 aa21.72■■□□□ 1.07
CLIP4-201ENST00000320081 CCER2I3L3R5 266 aa21.69■■□□□ 1.06
CLIP4-201ENST00000320081 HNRNPMP52272 730 aaKnown RBP eCLIP21.68■■□□□ 1.06
CLIP4-201ENST00000320081 ERCC6Q03468 1493 aa21.66■■□□□ 1.06
CLIP4-201ENST00000320081 C14orf37Q86TY3 774 aa21.66■■□□□ 1.06
CLIP4-201ENST00000320081 SOX12O15370 315 aa21.65■■□□□ 1.06
CLIP4-201ENST00000320081 TIMELESSQ9UNS1 1208 aa21.65■■□□□ 1.06
CLIP4-201ENST00000320081 NUP155O75694 1391 aa21.64■■□□□ 1.06
CLIP4-201ENST00000320081 U2SURPO15042 1029 aaKnown RBP21.64■■□□□ 1.05
CLIP4-201ENST00000320081 GGT6Q6P531 493 aa21.63■■□□□ 1.05
CLIP4-201ENST00000320081 CADPSQ9ULU8 1353 aa21.61■■□□□ 1.05
CLIP4-201ENST00000320081 MLECQ14165 292 aa21.61■■□□□ 1.05
CLIP4-201ENST00000320081 TPRNQ4KMQ1 711 aa21.61■■□□□ 1.05
CLIP4-201ENST00000320081 SMARCA4P51532 1647 aa21.6■■□□□ 1.05
CLIP4-201ENST00000320081 NUTM2DQ5VT03 806 aaPredicted RBP21.6■■□□□ 1.05
CLIP4-201ENST00000320081 ZNF644Q9H582 1327 aaPredicted RBP21.59■■□□□ 1.05
CLIP4-201ENST00000320081 STK26Q9P289 416 aa21.58■■□□□ 1.04
CLIP4-201ENST00000320081 SMARCA2P51531 1590 aa21.58■■□□□ 1.04
CLIP4-201ENST00000320081 NOP58Q9Y2X3 529 aaKnown RBP21.58■■□□□ 1.04
CLIP4-201ENST00000320081 ST20-MTHFSA0A0A6YYL1 179 aa21.55■■□□□ 1.04
CLIP4-201ENST00000320081 TMF1P82094 1093 aa21.55■■□□□ 1.04
CLIP4-201ENST00000320081 SPRYD3Q8NCJ5 442 aa21.54■■□□□ 1.04
CLIP4-201ENST00000320081 FTSJ3Q8IY81 847 aaKnown RBP21.53■■□□□ 1.04
CLIP4-201ENST00000320081 IGF1RP08069 1367 aa21.52■■□□□ 1.04
CLIP4-201ENST00000320081 POGKQ9P215 609 aa21.52■■□□□ 1.03
CLIP4-201ENST00000320081 FMN1Q68DA7 1419 aa21.51■■□□□ 1.03
CLIP4-201ENST00000320081 ARID4BQ4LE39 1312 aaPredicted RBP21.51■■□□□ 1.03
CLIP4-201ENST00000320081 CCDC146Q8IYE0 955 aa21.5■■□□□ 1.03
CLIP4-201ENST00000320081 PHLDB1Q86UU1 1377 aa21.5■■□□□ 1.03
CLIP4-201ENST00000320081 PLIN1O60240 522 aa21.49■■□□□ 1.03
CLIP4-201ENST00000320081 CFAP53Q96M91 514 aa21.49■■□□□ 1.03
CLIP4-201ENST00000320081 CDCA8Q53HL2 280 aa21.48■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms