RNA–Protein interactions for RNA: ENST00000299333.7

SCN3B-201, Transcript of sodium voltage-gated channel beta subunit 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SCN3B, Length 5,665 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3B-201ENST00000299333 CSRNP3Q8WYN3 585 aa19.55■□□□□ 0.72
SCN3B-201ENST00000299333 FBLN2P98095 1184 aa19.54■□□□□ 0.72
SCN3B-201ENST00000299333 CHGAP10645 457 aaKnown RBP19.53■□□□□ 0.72
SCN3B-201ENST00000299333 DEKP35659 375 aaKnown RBP19.53■□□□□ 0.72
SCN3B-201ENST00000299333 SUPT16HQ9Y5B9 1047 aaKnown RBP19.52■□□□□ 0.72
SCN3B-201ENST00000299333 ARID4BQ4LE39 1312 aaPredicted RBP19.49■□□□□ 0.71
SCN3B-201ENST00000299333 SENP3-EIF4A1A0A087X0R7 540 aa19.49■□□□□ 0.71
SCN3B-201ENST00000299333 PLCB2Q00722 1185 aa19.47■□□□□ 0.71
SCN3B-201ENST00000299333 ZRSR1Q15695 479 aaKnown RBP19.47■□□□□ 0.71
SCN3B-201ENST00000299333 ABCC9O60706 1549 aa19.42■□□□□ 0.7
SCN3B-201ENST00000299333 KDM2AQ9Y2K7 1162 aa19.4■□□□□ 0.7
SCN3B-201ENST00000299333 TNNT3P45378 269 aaPredicted RBP19.4■□□□□ 0.7
SCN3B-201ENST00000299333 CHIC2Q9UKJ5 165 aa19.39■□□□□ 0.7
SCN3B-201ENST00000299333 PPP4R2Q9NY27 417 aa19.38■□□□□ 0.69
SCN3B-201ENST00000299333 STAG3Q9UJ98 1225 aa19.37■□□□□ 0.69
SCN3B-201ENST00000299333 RGS3P49796 1198 aa19.36■□□□□ 0.69
SCN3B-201ENST00000299333 PABPN1Q86U42 306 aaKnown RBP eCLIP19.35■□□□□ 0.69
SCN3B-201ENST00000299333 EIF4G2P78344 907 aaKnown RBP eCLIP19.33■□□□□ 0.69
SCN3B-201ENST00000299333 MSNP26038 577 aaKnown RBP19.32■□□□□ 0.68
SCN3B-201ENST00000299333 CASC1Q6TDU7 716 aa19.31■□□□□ 0.68
SCN3B-201ENST00000299333 ARID3AQ99856 593 aa19.31■□□□□ 0.68
SCN3B-201ENST00000299333 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.3■□□□□ 0.68
SCN3B-201ENST00000299333 CHAF1AQ13111 956 aaPredicted RBP19.3■□□□□ 0.68
SCN3B-201ENST00000299333 VSIG10Q8N0Z9 540 aa19.3■□□□□ 0.68
SCN3B-201ENST00000299333 L1TD1Q5T7N2 865 aaKnown RBP19.29■□□□□ 0.68
SCN3B-201ENST00000299333 B4GALNT3Q6L9W6 998 aa19.29■□□□□ 0.68
SCN3B-201ENST00000299333 HSP90AB1P08238 724 aaKnown RBP19.28■□□□□ 0.68
SCN3B-201ENST00000299333 ZCCHC6Q5VYS8 1495 aaKnown RBP19.28■□□□□ 0.68
SCN3B-201ENST00000299333 RBM19Q9Y4C8 960 aaKnown RBP19.27■□□□□ 0.67
SCN3B-201ENST00000299333 GOLGA6L6A8MZA4 724 aa19.26■□□□□ 0.67
SCN3B-201ENST00000299333 FTSJ3Q8IY81 847 aaKnown RBP19.24■□□□□ 0.67
SCN3B-201ENST00000299333 ESF1Q9H501 851 aaKnown RBP19.24■□□□□ 0.67
SCN3B-201ENST00000299333 ZBTB7CA1YPR0 619 aa19.23■□□□□ 0.67
SCN3B-201ENST00000299333 TULP1O00294 542 aaPredicted RBP19.23■□□□□ 0.67
SCN3B-201ENST00000299333 A0A0U1RQG5 324 aaPredicted RBP19.22■□□□□ 0.67
SCN3B-201ENST00000299333 CALRP27797 417 aaKnown RBP19.22■□□□□ 0.67
SCN3B-201ENST00000299333 TAOK2Q9UL54 1235 aa19.2■□□□□ 0.66
SCN3B-201ENST00000299333 SPRYD3Q8NCJ5 442 aa19.19■□□□□ 0.66
SCN3B-201ENST00000299333 NRDCO43847 1150 aa19.19■□□□□ 0.66
SCN3B-201ENST00000299333 PLPPR3Q6T4P5 718 aa19.19■□□□□ 0.66
SCN3B-201ENST00000299333 PODXL2Q9NZ53 605 aa19.17■□□□□ 0.66
SCN3B-201ENST00000299333 PNNQ9H307 717 aaKnown RBP19.15■□□□□ 0.66
SCN3B-201ENST00000299333 HSCBQ8IWL3 235 aa19.14■□□□□ 0.66
SCN3B-201ENST00000299333 FRAT1Q92837 279 aaPredicted RBP19.14■□□□□ 0.65
SCN3B-201ENST00000299333 NEUROD2Q15784 382 aa19.13■□□□□ 0.65
SCN3B-201ENST00000299333 DRC7Q8IY82 874 aa19.12■□□□□ 0.65
SCN3B-201ENST00000299333 A0A0G2JS52 829 aa19.1■□□□□ 0.65
SCN3B-201ENST00000299333 HSP90AA2PQ14568 343 aaPredicted RBP19.09■□□□□ 0.65
SCN3B-201ENST00000299333 SCRIBQ14160 1630 aa19.09■□□□□ 0.65
SCN3B-201ENST00000299333 GOLGA6L4A6NEF3 574 aa19.09■□□□□ 0.65
SCN3B-201ENST00000299333 GZF1Q9H116 711 aaPredicted RBP19.08■□□□□ 0.64
SCN3B-201ENST00000299333 SENP3Q9H4L4 574 aaPredicted RBP19.07■□□□□ 0.64
SCN3B-201ENST00000299333 CFAP53Q96M91 514 aa19.07■□□□□ 0.64
SCN3B-201ENST00000299333 PLEKHG5O94827 1062 aa19.06■□□□□ 0.64
SCN3B-201ENST00000299333 RRP7BPQ9NSQ0 103 aa19.05■□□□□ 0.64
SCN3B-201ENST00000299333 PRKCSHP14314 528 aaPredicted RBP19.05■□□□□ 0.64
SCN3B-201ENST00000299333 FGD1P98174 961 aa19.05■□□□□ 0.64
SCN3B-201ENST00000299333 KNSTRNQ9Y448 316 aa19.05■□□□□ 0.64
SCN3B-201ENST00000299333 TSPY4P0CV99 314 aa19.03■□□□□ 0.64
SCN3B-201ENST00000299333 TSPY10P0CW01 314 aa19.03■□□□□ 0.64
SCN3B-201ENST00000299333 NAP1L2Q9ULW6 460 aaPredicted RBP19.03■□□□□ 0.64
SCN3B-201ENST00000299333 PKNOX2Q96KN3 472 aa19.01■□□□□ 0.63
SCN3B-201ENST00000299333 CCDC180Q9P1Z9 1646 aa19.01■□□□□ 0.63
SCN3B-201ENST00000299333 KIAA2012Q0VF49 1180 aa19.01■□□□□ 0.63
SCN3B-201ENST00000299333 KCNJ4P48050 445 aa19■□□□□ 0.63
SCN3B-201ENST00000299333 PTMSP20962 102 aa18.99■□□□□ 0.63
SCN3B-201ENST00000299333 C14orf37Q86TY3 774 aa18.98■□□□□ 0.63
SCN3B-201ENST00000299333 MTUS2Q5JR59 1369 aa18.98■□□□□ 0.63
SCN3B-201ENST00000299333 APPP05067 770 aa18.98■□□□□ 0.63
SCN3B-201ENST00000299333 RGL3Q3MIN7 710 aa18.98■□□□□ 0.63
SCN3B-201ENST00000299333 TSHZ2Q9NRE2 1034 aa18.97■□□□□ 0.63
SCN3B-201ENST00000299333 SLKQ9H2G2 1235 aaPredicted RBP18.97■□□□□ 0.63
SCN3B-201ENST00000299333 MAPK8IP3Q9UPT6 1336 aa18.96■□□□□ 0.63
SCN3B-201ENST00000299333 GOLGA6L3A6NEY3 463 aa18.94■□□□□ 0.62
SCN3B-201ENST00000299333 OS9Q13438 667 aaPredicted RBP18.93■□□□□ 0.62
SCN3B-201ENST00000299333 GBP4Q96PP9 640 aa18.93■□□□□ 0.62
SCN3B-201ENST00000299333 CARD11Q9BXL7 1154 aa18.93■□□□□ 0.62
SCN3B-201ENST00000299333 CHMP4BQ9H444 224 aaKnown RBP18.91■□□□□ 0.62
SCN3B-201ENST00000299333 RSPH6AQ9H0K4 717 aa18.91■□□□□ 0.62
SCN3B-201ENST00000299333 CC2D1BQ5T0F9 858 aaKnown RBP18.91■□□□□ 0.62
SCN3B-201ENST00000299333 EEA1Q15075 1411 aa18.91■□□□□ 0.62
SCN3B-201ENST00000299333 MS4A1P11836 297 aa18.91■□□□□ 0.62
SCN3B-201ENST00000299333 MYO15BQ96JP2 1530 aa18.9■□□□□ 0.62
SCN3B-201ENST00000299333 CDCA8Q53HL2 280 aa18.89■□□□□ 0.61
SCN3B-201ENST00000299333 CLIP1P30622 1438 aa18.89■□□□□ 0.61
SCN3B-201ENST00000299333 MCCP23508 829 aa18.88■□□□□ 0.61
SCN3B-201ENST00000299333 SIN3AQ96ST3 1273 aa18.87■□□□□ 0.61
SCN3B-201ENST00000299333 IPO9Q96P70 1041 aaKnown RBP18.86■□□□□ 0.61
SCN3B-201ENST00000299333 TIMELESSQ9UNS1 1208 aa18.85■□□□□ 0.61
SCN3B-201ENST00000299333 NUDCQ9Y266 331 aa18.85■□□□□ 0.61
SCN3B-201ENST00000299333 GOLGA3Q08378 1498 aa18.83■□□□□ 0.61
SCN3B-201ENST00000299333 NOC3LQ8WTT2 800 aaKnown RBP18.81■□□□□ 0.6
SCN3B-201ENST00000299333 NCBP3Q53F19 620 aaKnown RBP18.8■□□□□ 0.6
SCN3B-201ENST00000299333 U2SURPO15042 1029 aaKnown RBP18.8■□□□□ 0.6
SCN3B-201ENST00000299333 TCERG1O14776 1098 aaKnown RBP18.8■□□□□ 0.6
SCN3B-201ENST00000299333 PPP1R15AO75807 674 aaPredicted RBP18.79■□□□□ 0.6
SCN3B-201ENST00000299333 GOLGA6L1Q8N7Z2 621 aa18.79■□□□□ 0.6
SCN3B-201ENST00000299333 CEP162Q5TB80 1403 aa18.79■□□□□ 0.6
SCN3B-201ENST00000299333 SETQ01105 290 aaPredicted RBP18.78■□□□□ 0.6
SCN3B-201ENST00000299333 CCER2I3L3R5 266 aa18.78■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms