RNA–Protein interactions for RNA: ENST00000297933.10

GAPVD1-202, Transcript of GTPase activating protein and VPS9 domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene GAPVD1, Length 6,003 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GAPVD1-202ENST00000297933 GOLGA6L2Q8N9W4 650 aaPredicted RBP9.27□□□□□ -0.93
GAPVD1-202ENST00000297933 CFDP1Q9UEE9 299 aaPredicted RBP9.26□□□□□ -0.93
GAPVD1-202ENST00000297933 ANP32AP39687 249 aaKnown RBP9.26□□□□□ -0.93
GAPVD1-202ENST00000297933 RGL3Q3MIN7 710 aa9.25□□□□□ -0.93
GAPVD1-202ENST00000297933 MYH16Q9H6N6 1097 aa9.25□□□□□ -0.93
GAPVD1-202ENST00000297933 NPHP1O15259 732 aa9.24□□□□□ -0.93
GAPVD1-202ENST00000297933 DDX10Q13206 875 aaKnown RBP9.24□□□□□ -0.93
GAPVD1-202ENST00000297933 HNRNPUQ00839 825 aaKnown RBP eCLIP9.24□□□□□ -0.93
GAPVD1-202ENST00000297933 MLECQ14165 292 aa9.24□□□□□ -0.93
GAPVD1-202ENST00000297933 CLIP1P30622 1438 aa9.23□□□□□ -0.93
GAPVD1-202ENST00000297933 POGKQ9P215 609 aa9.22□□□□□ -0.93
GAPVD1-202ENST00000297933 PPM1GO15355 546 aaPredicted RBP9.21□□□□□ -0.93
GAPVD1-202ENST00000297933 ACIN1Q9UKV3 1341 aaKnown RBP9.21□□□□□ -0.94
GAPVD1-202ENST00000297933 KIF27Q86VH2 1401 aa9.21□□□□□ -0.94
GAPVD1-202ENST00000297933 ANP32BQ92688 251 aaKnown RBP9.21□□□□□ -0.94
GAPVD1-202ENST00000297933 HDGFP51858 240 aaKnown RBP9.21□□□□□ -0.94
GAPVD1-202ENST00000297933 CFAP53Q96M91 514 aa9.21□□□□□ -0.94
GAPVD1-202ENST00000297933 GTF3C3Q9Y5Q9 886 aa9.2□□□□□ -0.94
GAPVD1-202ENST00000297933 CDCA8Q53HL2 280 aa9.19□□□□□ -0.94
GAPVD1-202ENST00000297933 EIF4G1Q04637 1599 aaKnown RBP9.18□□□□□ -0.94
GAPVD1-202ENST00000297933 MRS2Q9HD23 443 aa9.18□□□□□ -0.94
GAPVD1-202ENST00000297933 WRNQ14191 1432 aaPredicted RBP eCLIP9.18□□□□□ -0.947e-6■■■■■ 39.7
GAPVD1-202ENST00000297933 CDK11BP21127 795 aaKnown RBP9.17□□□□□ -0.94
GAPVD1-202ENST00000297933 EIF4G2P78344 907 aaKnown RBP eCLIP9.17□□□□□ -0.94
GAPVD1-202ENST00000297933 KANK1Q14678 1352 aa9.17□□□□□ -0.94
GAPVD1-202ENST00000297933 GOLGA3Q08378 1498 aa9.17□□□□□ -0.94
GAPVD1-202ENST00000297933 KNSTRNQ9Y448 316 aa9.15□□□□□ -0.94
GAPVD1-202ENST00000297933 EEA1Q15075 1411 aa9.15□□□□□ -0.95
GAPVD1-202ENST00000297933 FKBP8Q14318 412 aa9.13□□□□□ -0.95
GAPVD1-202ENST00000297933 CCNB3Q8WWL7 1395 aa9.13□□□□□ -0.95
GAPVD1-202ENST00000297933 CCDC136Q96JN2 1154 aa9.12□□□□□ -0.95
GAPVD1-202ENST00000297933 MAPK8IP3Q9UPT6 1336 aa9.12□□□□□ -0.95
GAPVD1-202ENST00000297933 CARD11Q9BXL7 1154 aa9.12□□□□□ -0.95
GAPVD1-202ENST00000297933 LAS1LQ9Y4W2 734 aaKnown RBP9.12□□□□□ -0.95
GAPVD1-202ENST00000297933 HIRIP3Q9BW71 556 aaPredicted RBP9.11□□□□□ -0.95
GAPVD1-202ENST00000297933 NUDCQ9Y266 331 aa9.11□□□□□ -0.95
GAPVD1-202ENST00000297933 GGT6Q6P531 493 aa9.09□□□□□ -0.95
GAPVD1-202ENST00000297933 PDS5BQ9NTI5 1447 aa9.09□□□□□ -0.95
GAPVD1-202ENST00000297933 CARMIL2Q6F5E8 1435 aa9.08□□□□□ -0.96
GAPVD1-202ENST00000297933 BAZ1AQ9NRL2 1556 aaPredicted RBP9.08□□□□□ -0.96
GAPVD1-202ENST00000297933 DCAF1Q9Y4B6 1507 aa9.07□□□□□ -0.96
GAPVD1-202ENST00000297933 CEP164Q9UPV0 1460 aa9.07□□□□□ -0.96
GAPVD1-202ENST00000297933 SOX12O15370 315 aa9.07□□□□□ -0.96
GAPVD1-202ENST00000297933 GOLGA2Q08379 1002 aa9.07□□□□□ -0.96
GAPVD1-202ENST00000297933 TULP1O00294 542 aaPredicted RBP9.07□□□□□ -0.96
GAPVD1-202ENST00000297933 CUX2O14529 1486 aa9.07□□□□□ -0.96
GAPVD1-202ENST00000297933 TNNT2P45379 298 aaPredicted RBP9.07□□□□□ -0.96
GAPVD1-202ENST00000297933 CEP162Q5TB80 1403 aa9.06□□□□□ -0.96
GAPVD1-202ENST00000297933 SRPK2P78362 688 aaKnown RBP9.06□□□□□ -0.96
GAPVD1-202ENST00000297933 NEUROD2Q15784 382 aa9.06□□□□□ -0.96
GAPVD1-202ENST00000297933 AEBP2Q6ZN18 517 aaPredicted RBP9.06□□□□□ -0.96
GAPVD1-202ENST00000297933 PNNQ9H307 717 aaKnown RBP9.06□□□□□ -0.96
GAPVD1-202ENST00000297933 CARMIL1Q5VZK9 1371 aa9.05□□□□□ -0.96
GAPVD1-202ENST00000297933 FTSJ3Q8IY81 847 aaKnown RBP9.05□□□□□ -0.96
GAPVD1-202ENST00000297933 CASC1Q6TDU7 716 aa9.05□□□□□ -0.96
GAPVD1-202ENST00000297933 CCDC9Q9Y3X0 531 aaKnown RBP9.05□□□□□ -0.96
GAPVD1-202ENST00000297933 U2SURPO15042 1029 aaKnown RBP9.05□□□□□ -0.96
GAPVD1-202ENST00000297933 OS9Q13438 667 aaPredicted RBP9.04□□□□□ -0.96
GAPVD1-202ENST00000297933 PAK3O75914 559 aaPredicted RBP9.04□□□□□ -0.96
GAPVD1-202ENST00000297933 SAFB2Q14151 953 aaKnown RBP eCLIP9.03□□□□□ -0.96
GAPVD1-202ENST00000297933 CSB-PGBD3P0DP91 1061 aa9.03□□□□□ -0.96
GAPVD1-202ENST00000297933 FHAD1B1AJZ9 1412 aa9.03□□□□□ -0.96
GAPVD1-202ENST00000297933 NCLP19338 710 aaKnown RBP9.03□□□□□ -0.96
GAPVD1-202ENST00000297933 STK26Q9P289 416 aa9.02□□□□□ -0.96
GAPVD1-202ENST00000297933 CECR2Q9BXF3 1484 aa9.02□□□□□ -0.97
GAPVD1-202ENST00000297933 TMF1P82094 1093 aa9.01□□□□□ -0.97
GAPVD1-202ENST00000297933 DCAF11Q8TEB1 546 aa9.01□□□□□ -0.97
GAPVD1-202ENST00000297933 EID1Q9Y6B2 187 aa9□□□□□ -0.97
GAPVD1-202ENST00000297933 CC2D1BQ5T0F9 858 aaKnown RBP9□□□□□ -0.97
GAPVD1-202ENST00000297933 EFCAB2Q5VUJ9 269 aa9□□□□□ -0.97
GAPVD1-202ENST00000297933 TMX4Q9H1E5 349 aaPredicted RBP9□□□□□ -0.97
GAPVD1-202ENST00000297933 SOGA1O94964 1423 aa9□□□□□ -0.97
GAPVD1-202ENST00000297933 HDGFL2Q7Z4V5 671 aaPredicted RBP8.99□□□□□ -0.97
GAPVD1-202ENST00000297933 ZRSR1Q15695 479 aaKnown RBP8.99□□□□□ -0.97
GAPVD1-202ENST00000297933 EIF5BO60841 1220 aaKnown RBP8.99□□□□□ -0.97
GAPVD1-202ENST00000297933 RTF1Q92541 710 aaKnown RBP8.99□□□□□ -0.97
GAPVD1-202ENST00000297933 TAOK2Q9UL54 1235 aa8.99□□□□□ -0.97
GAPVD1-202ENST00000297933 TNIKQ9UKE5 1360 aa8.99□□□□□ -0.97
GAPVD1-202ENST00000297933 SMARCA2P51531 1590 aa8.98□□□□□ -0.97
GAPVD1-202ENST00000297933 CHMP4BQ9H444 224 aaKnown RBP8.98□□□□□ -0.97
GAPVD1-202ENST00000297933 IRX6P78412 446 aaPredicted RBP8.98□□□□□ -0.97
GAPVD1-202ENST00000297933 SENP3-EIF4A1A0A087X0R7 540 aa8.97□□□□□ -0.97
GAPVD1-202ENST00000297933 BECN1Q14457 450 aa8.97□□□□□ -0.97
GAPVD1-202ENST00000297933 MORC1Q86VD1 984 aa8.97□□□□□ -0.97
GAPVD1-202ENST00000297933 TDRD9Q8NDG6 1382 aaKnown RBP8.96□□□□□ -0.98
GAPVD1-202ENST00000297933 FGD1P98174 961 aa8.96□□□□□ -0.98
GAPVD1-202ENST00000297933 ISY1Q9ULR0 285 aaKnown RBP8.96□□□□□ -0.98
GAPVD1-202ENST00000297933 FRAT1Q92837 279 aaPredicted RBP8.95□□□□□ -0.98
GAPVD1-202ENST00000297933 ZNF330Q9Y3S2 320 aaPredicted RBP8.95□□□□□ -0.98
GAPVD1-202ENST00000297933 MS4A1P11836 297 aa8.95□□□□□ -0.98
GAPVD1-202ENST00000297933 KCNJ4P48050 445 aa8.94□□□□□ -0.98
GAPVD1-202ENST00000297933 NAP1L2Q9ULW6 460 aaPredicted RBP8.94□□□□□ -0.98
GAPVD1-202ENST00000297933 GOLGA6L22H0YM25 854 aa8.94□□□□□ -0.98
GAPVD1-202ENST00000297933 KIF3BO15066 747 aa8.93□□□□□ -0.98
GAPVD1-202ENST00000297933 CYB5RLQ6IPT4 315 aa8.93□□□□□ -0.98
GAPVD1-202ENST00000297933 TPRNQ4KMQ1 711 aa8.93□□□□□ -0.98
GAPVD1-202ENST00000297933 SIN3AQ96ST3 1273 aa8.92□□□□□ -0.98
GAPVD1-202ENST00000297933 ARHGAP35Q9NRY4 1499 aa8.92□□□□□ -0.98
GAPVD1-202ENST00000297933 WASHC2CQ9Y4E1 1318 aa8.92□□□□□ -0.98
GAPVD1-202ENST00000297933 PKD2Q13563 968 aa8.91□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms