RNA–Protein interactions for RNA: ENST00000262043.7

PHF3-201, Transcript of PHD finger protein 3, humanhuman

APPRIS P1 TSL 5 BASIC

Gene PHF3, Length 8,233 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHF3-201ENST00000262043 RRP7BPQ9NSQ0 103 aa13.62□□□□□ -0.23
PHF3-201ENST00000262043 MYH16Q9H6N6 1097 aa13.61□□□□□ -0.23
PHF3-201ENST00000262043 RB1CC1Q8TDY2 1594 aa13.6□□□□□ -0.23
PHF3-201ENST00000262043 PLEKHG5O94827 1062 aa13.59□□□□□ -0.23
PHF3-201ENST00000262043 EIF4G2P78344 907 aaKnown RBP eCLIP13.59□□□□□ -0.23
PHF3-201ENST00000262043 MYO15BQ96JP2 1530 aa13.58□□□□□ -0.23
PHF3-201ENST00000262043 A0A0G2JS52 829 aa13.58□□□□□ -0.24
PHF3-201ENST00000262043 ZBTB7CA1YPR0 619 aa13.58□□□□□ -0.24
PHF3-201ENST00000262043 C14orf37Q86TY3 774 aa13.55□□□□□ -0.24
PHF3-201ENST00000262043 GOLGA3Q08378 1498 aa13.55□□□□□ -0.24
PHF3-201ENST00000262043 GLIPR1L2Q4G1C9 344 aa13.54□□□□□ -0.24
PHF3-201ENST00000262043 KCNH8Q96L42 1107 aa13.53□□□□□ -0.24
PHF3-201ENST00000262043 SENP3-EIF4A1A0A087X0R7 540 aa13.53□□□□□ -0.24
PHF3-201ENST00000262043 CEP162Q5TB80 1403 aa13.52□□□□□ -0.25
PHF3-201ENST00000262043 RSF1Q96T23 1441 aaPredicted RBP13.52□□□□□ -0.25
PHF3-201ENST00000262043 RGL3Q3MIN7 710 aa13.51□□□□□ -0.25
PHF3-201ENST00000262043 PPP1R15AO75807 674 aaPredicted RBP13.49□□□□□ -0.25
PHF3-201ENST00000262043 BECN1Q14457 450 aa13.49□□□□□ -0.25
PHF3-201ENST00000262043 DDRGK1Q96HY6 314 aa13.48□□□□□ -0.25
PHF3-201ENST00000262043 PPM1GO15355 546 aaPredicted RBP13.45□□□□□ -0.26
PHF3-201ENST00000262043 PLEKHD1A6NEE1 506 aa13.44□□□□□ -0.26
PHF3-201ENST00000262043 BAZ1BQ9UIG0 1483 aaKnown RBP13.43□□□□□ -0.26
PHF3-201ENST00000262043 KNSTRNQ9Y448 316 aa13.43□□□□□ -0.26
PHF3-201ENST00000262043 SUPT16HQ9Y5B9 1047 aaKnown RBP13.43□□□□□ -0.26
PHF3-201ENST00000262043 NCLP19338 710 aaKnown RBP13.43□□□□□ -0.26
PHF3-201ENST00000262043 TRIM44Q96DX7 344 aaPredicted RBP13.43□□□□□ -0.26
PHF3-201ENST00000262043 CDK11BP21127 795 aaKnown RBP13.42□□□□□ -0.26
PHF3-201ENST00000262043 FTSJ3Q8IY81 847 aaKnown RBP13.42□□□□□ -0.26
PHF3-201ENST00000262043 EEA1Q15075 1411 aa13.42□□□□□ -0.26
PHF3-201ENST00000262043 CFAP53Q96M91 514 aa13.41□□□□□ -0.26
PHF3-201ENST00000262043 LAS1LQ9Y4W2 734 aaKnown RBP13.4□□□□□ -0.26
PHF3-201ENST00000262043 TPRNQ4KMQ1 711 aa13.4□□□□□ -0.26
PHF3-201ENST00000262043 CARD11Q9BXL7 1154 aa13.39□□□□□ -0.27
PHF3-201ENST00000262043 WRNQ14191 1432 aaPredicted RBP eCLIP13.39□□□□□ -0.27
PHF3-201ENST00000262043 ARID4BQ4LE39 1312 aaPredicted RBP13.39□□□□□ -0.27
PHF3-201ENST00000262043 CFDP1Q9UEE9 299 aaPredicted RBP13.39□□□□□ -0.27
PHF3-201ENST00000262043 GOLGA6L22H0YM25 854 aa13.38□□□□□ -0.27
PHF3-201ENST00000262043 CASC1Q6TDU7 716 aa13.38□□□□□ -0.27
PHF3-201ENST00000262043 NACADO15069 1562 aa13.38□□□□□ -0.27
PHF3-201ENST00000262043 CDCA8Q53HL2 280 aa13.37□□□□□ -0.27
PHF3-201ENST00000262043 CEP164Q9UPV0 1460 aa13.37□□□□□ -0.27
PHF3-201ENST00000262043 KIF27Q86VH2 1401 aa13.37□□□□□ -0.27
PHF3-201ENST00000262043 NEUROD2Q15784 382 aa13.37□□□□□ -0.27
PHF3-201ENST00000262043 HAP1P54257 671 aaPredicted RBP13.36□□□□□ -0.27
PHF3-201ENST00000262043 TNNT2P45379 298 aaPredicted RBP13.34□□□□□ -0.27
PHF3-201ENST00000262043 EIF4G1Q04637 1599 aaKnown RBP13.34□□□□□ -0.27
PHF3-201ENST00000262043 ANP32EQ9BTT0 268 aa13.33□□□□□ -0.27
PHF3-201ENST00000262043 CC2D1BQ5T0F9 858 aaKnown RBP13.33□□□□□ -0.28
PHF3-201ENST00000262043 MAPK8IP3Q9UPT6 1336 aa13.32□□□□□ -0.28
PHF3-201ENST00000262043 ZRSR1Q15695 479 aaKnown RBP13.32□□□□□ -0.28
PHF3-201ENST00000262043 ERCC6Q03468 1493 aa13.32□□□□□ -0.28
PHF3-201ENST00000262043 SIN3AQ96ST3 1273 aa13.31□□□□□ -0.28
PHF3-201ENST00000262043 PTMAP06454 111 aaKnown RBP13.31□□□□□ -0.28
PHF3-201ENST00000262043 FRAT1Q92837 279 aaPredicted RBP13.3□□□□□ -0.28
PHF3-201ENST00000262043 TNIKQ9UKE5 1360 aa13.29□□□□□ -0.28
PHF3-201ENST00000262043 POGKQ9P215 609 aa13.29□□□□□ -0.28
PHF3-201ENST00000262043 RGS3P49796 1198 aa13.29□□□□□ -0.28
PHF3-201ENST00000262043 DNTTIP2Q5QJE6 756 aaKnown RBP13.28□□□□□ -0.28
PHF3-201ENST00000262043 TULP1O00294 542 aaPredicted RBP13.28□□□□□ -0.28
PHF3-201ENST00000262043 TAOK2Q9UL54 1235 aa13.28□□□□□ -0.28
PHF3-201ENST00000262043 LMOD2Q6P5Q4 547 aa13.27□□□□□ -0.29
PHF3-201ENST00000262043 NUDCQ9Y266 331 aa13.26□□□□□ -0.29
PHF3-201ENST00000262043 BAZ1AQ9NRL2 1556 aaPredicted RBP13.25□□□□□ -0.29
PHF3-201ENST00000262043 U2SURPO15042 1029 aaKnown RBP13.25□□□□□ -0.29
PHF3-201ENST00000262043 PPP4R2Q9NY27 417 aa13.25□□□□□ -0.29
PHF3-201ENST00000262043 HSP90AB1P08238 724 aaKnown RBP13.23□□□□□ -0.29
PHF3-201ENST00000262043 B4GALNT3Q6L9W6 998 aa13.23□□□□□ -0.29
PHF3-201ENST00000262043 OS9Q13438 667 aaPredicted RBP13.22□□□□□ -0.29
PHF3-201ENST00000262043 FHAD1B1AJZ9 1412 aa13.22□□□□□ -0.29
PHF3-201ENST00000262043 CCNB3Q8WWL7 1395 aa13.22□□□□□ -0.29
PHF3-201ENST00000262043 DCAF11Q8TEB1 546 aa13.22□□□□□ -0.29
PHF3-201ENST00000262043 NPHP1O15259 732 aa13.21□□□□□ -0.29
PHF3-201ENST00000262043 PLCB2Q00722 1185 aa13.21□□□□□ -0.3
PHF3-201ENST00000262043 NOP58Q9Y2X3 529 aaKnown RBP13.21□□□□□ -0.3
PHF3-201ENST00000262043 PNNQ9H307 717 aaKnown RBP13.19□□□□□ -0.3
PHF3-201ENST00000262043 RTN4Q9NQC3 1192 aaKnown RBP13.19□□□□□ -0.3
PHF3-201ENST00000262043 ABCC8Q09428 1581 aa13.19□□□□□ -0.3
PHF3-201ENST00000262043 TMF1P82094 1093 aa13.19□□□□□ -0.3
PHF3-201ENST00000262043 NAP1L2Q9ULW6 460 aaPredicted RBP13.18□□□□□ -0.3
PHF3-201ENST00000262043 FGD1P98174 961 aa13.18□□□□□ -0.3
PHF3-201ENST00000262043 KCNJ4P48050 445 aa13.18□□□□□ -0.3
PHF3-201ENST00000262043 NAP1L5Q96NT1 182 aaPredicted RBP13.17□□□□□ -0.3
PHF3-201ENST00000262043 KANK1Q14678 1352 aa13.17□□□□□ -0.3
PHF3-201ENST00000262043 CHMP4BQ9H444 224 aaKnown RBP13.17□□□□□ -0.3
PHF3-201ENST00000262043 SOX12O15370 315 aa13.16□□□□□ -0.3
PHF3-201ENST00000262043 ARHGAP35Q9NRY4 1499 aa13.16□□□□□ -0.3
PHF3-201ENST00000262043 MS4A1P11836 297 aa13.16□□□□□ -0.3
PHF3-201ENST00000262043 CUX2O14529 1486 aa13.15□□□□□ -0.3
PHF3-201ENST00000262043 SRPK2P78362 688 aaKnown RBP13.15□□□□□ -0.3
PHF3-201ENST00000262043 ERICH6BQ5W0A0 696 aa13.14□□□□□ -0.31
PHF3-201ENST00000262043 GOLGA2Q08379 1002 aa13.13□□□□□ -0.31
PHF3-201ENST00000262043 SAFB2Q14151 953 aaKnown RBP eCLIP13.13□□□□□ -0.316e-6■■■□□ 18.1
PHF3-201ENST00000262043 SPRYD3Q8NCJ5 442 aa13.13□□□□□ -0.31
PHF3-201ENST00000262043 HSCBQ8IWL3 235 aa13.12□□□□□ -0.31
PHF3-201ENST00000262043 SOGA1O94964 1423 aa13.12□□□□□ -0.31
PHF3-201ENST00000262043 SETD5Q9C0A6 1442 aa13.11□□□□□ -0.31
PHF3-201ENST00000262043 CARMIL1Q5VZK9 1371 aa13.11□□□□□ -0.31
PHF3-201ENST00000262043 GOLGA6L6A8MZA4 724 aa13.11□□□□□ -0.31
PHF3-201ENST00000262043 MLECQ14165 292 aa13.11□□□□□ -0.31
PHF3-201ENST00000262043 WIZO95785 1651 aa13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms