RNA–Protein interactions for RNA: ENST00000226574.8

NFKB1-201, Transcript of nuclear factor kappa B subunit 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene NFKB1, Length 4,085 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NFKB1-201ENST00000226574 RUSC2Q8N2Y8 1516 aa18.71■□□□□ 0.59
NFKB1-201ENST00000226574 CEP164Q9UPV0 1460 aa18.7■□□□□ 0.58
NFKB1-201ENST00000226574 B4GALNT3Q6L9W6 998 aa18.7■□□□□ 0.58
NFKB1-201ENST00000226574 EIF4G2P78344 907 aaKnown RBP eCLIP18.69■□□□□ 0.58
NFKB1-201ENST00000226574 RBM19Q9Y4C8 960 aaKnown RBP18.68■□□□□ 0.58
NFKB1-201ENST00000226574 ZBTB47Q9UFB7 747 aaPredicted RBP18.65■□□□□ 0.58
NFKB1-201ENST00000226574 EIF5BO60841 1220 aaKnown RBP18.64■□□□□ 0.57
NFKB1-201ENST00000226574 CCNB3Q8WWL7 1395 aa18.64■□□□□ 0.57
NFKB1-201ENST00000226574 CANXP27824 592 aaKnown RBP18.6■□□□□ 0.57
NFKB1-201ENST00000226574 VPS8Q8N3P4 1428 aa18.6■□□□□ 0.57
NFKB1-201ENST00000226574 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.59■□□□□ 0.57
NFKB1-201ENST00000226574 WIZO95785 1651 aa18.59■□□□□ 0.57
NFKB1-201ENST00000226574 ARXQ96QS3 562 aa18.58■□□□□ 0.56
NFKB1-201ENST00000226574 FOXD1Q16676 465 aa18.56■□□□□ 0.56
NFKB1-201ENST00000226574 BAZ1AQ9NRL2 1556 aaPredicted RBP18.54■□□□□ 0.56
NFKB1-201ENST00000226574 RGL3Q3MIN7 710 aa18.52■□□□□ 0.55
NFKB1-201ENST00000226574 RTN4Q9NQC3 1192 aaKnown RBP18.51■□□□□ 0.55
NFKB1-201ENST00000226574 RAB3GAP2Q9H2M9 1393 aa18.51■□□□□ 0.55
NFKB1-201ENST00000226574 KIF27Q86VH2 1401 aa18.5■□□□□ 0.55
NFKB1-201ENST00000226574 BAZ1BQ9UIG0 1483 aaKnown RBP18.48■□□□□ 0.55
NFKB1-201ENST00000226574 SENP3Q9H4L4 574 aaPredicted RBP18.48■□□□□ 0.55
NFKB1-201ENST00000226574 NACADO15069 1562 aa18.46■□□□□ 0.55
NFKB1-201ENST00000226574 LAS1LQ9Y4W2 734 aaKnown RBP18.46■□□□□ 0.55
NFKB1-201ENST00000226574 DHX57Q6P158 1386 aaKnown RBP18.46■□□□□ 0.54
NFKB1-201ENST00000226574 PPP4R2Q9NY27 417 aa18.45■□□□□ 0.54
NFKB1-201ENST00000226574 RAPGEF2Q9Y4G8 1499 aa18.44■□□□□ 0.54
NFKB1-201ENST00000226574 HSPA5P11021 654 aaKnown RBP18.42■□□□□ 0.54
NFKB1-201ENST00000226574 PPP1R15AO75807 674 aaPredicted RBP18.41■□□□□ 0.54
NFKB1-201ENST00000226574 CHGAP10645 457 aaKnown RBP18.4■□□□□ 0.54
NFKB1-201ENST00000226574 SETD5Q9C0A6 1442 aa18.39■□□□□ 0.53
NFKB1-201ENST00000226574 TSPY4P0CV99 314 aa18.36■□□□□ 0.53
NFKB1-201ENST00000226574 TSPY10P0CW01 314 aa18.36■□□□□ 0.53
NFKB1-201ENST00000226574 CCER2I3L3R5 266 aa18.35■□□□□ 0.53
NFKB1-201ENST00000226574 CARMIL1Q5VZK9 1371 aa18.35■□□□□ 0.53
NFKB1-201ENST00000226574 CARD11Q9BXL7 1154 aa18.33■□□□□ 0.53
NFKB1-201ENST00000226574 NOP58Q9Y2X3 529 aaKnown RBP18.33■□□□□ 0.53
NFKB1-201ENST00000226574 CUX2O14529 1486 aa18.32■□□□□ 0.52
NFKB1-201ENST00000226574 DEKP35659 375 aaKnown RBP18.32■□□□□ 0.52
NFKB1-201ENST00000226574 WDR43Q15061 677 aaKnown RBP eCLIP18.3■□□□□ 0.52
NFKB1-201ENST00000226574 CFDP1Q9UEE9 299 aaPredicted RBP18.28■□□□□ 0.52
NFKB1-201ENST00000226574 RGS3P49796 1198 aa18.27■□□□□ 0.52
NFKB1-201ENST00000226574 CC2D1BQ5T0F9 858 aaKnown RBP18.27■□□□□ 0.52
NFKB1-201ENST00000226574 NEFMP07197 916 aa18.27■□□□□ 0.51
NFKB1-201ENST00000226574 SLC24A1O60721 1099 aa18.25■□□□□ 0.51
NFKB1-201ENST00000226574 NEUROD2Q15784 382 aa18.24■□□□□ 0.51
NFKB1-201ENST00000226574 L3MBTL2Q969R5 705 aa18.24■□□□□ 0.51
NFKB1-201ENST00000226574 TIMELESSQ9UNS1 1208 aa18.23■□□□□ 0.51
NFKB1-201ENST00000226574 CHMP7Q8WUX9 453 aaPredicted RBP18.21■□□□□ 0.51
NFKB1-201ENST00000226574 DCAF11Q8TEB1 546 aa18.2■□□□□ 0.5
NFKB1-201ENST00000226574 HSP90AA1P07900 732 aaKnown RBP18.18■□□□□ 0.5
NFKB1-201ENST00000226574 GOLGA6L2Q8N9W4 650 aaPredicted RBP18.17■□□□□ 0.5
NFKB1-201ENST00000226574 MPHOSPH9Q99550 1183 aa18.17■□□□□ 0.5
NFKB1-201ENST00000226574 TOP2AP11388 1531 aaKnown RBP18.16■□□□□ 0.5
NFKB1-201ENST00000226574 UPF2Q9HAU5 1272 aaKnown RBP18.16■□□□□ 0.5
NFKB1-201ENST00000226574 FHAD1B1AJZ9 1412 aa18.15■□□□□ 0.5
NFKB1-201ENST00000226574 TNNT2P45379 298 aaPredicted RBP18.15■□□□□ 0.5
NFKB1-201ENST00000226574 FHOD3Q2V2M9 1422 aa18.14■□□□□ 0.49
NFKB1-201ENST00000226574 PLEKHD1A6NEE1 506 aa18.13■□□□□ 0.49
NFKB1-201ENST00000226574 TDRD9Q8NDG6 1382 aaKnown RBP18.12■□□□□ 0.49
NFKB1-201ENST00000226574 PKD2Q13563 968 aa18.11■□□□□ 0.49
NFKB1-201ENST00000226574 ARHGAP35Q9NRY4 1499 aa18.1■□□□□ 0.49
NFKB1-201ENST00000226574 FRAT1Q92837 279 aaPredicted RBP18.08■□□□□ 0.49
NFKB1-201ENST00000226574 KNSTRNQ9Y448 316 aa18.08■□□□□ 0.48
NFKB1-201ENST00000226574 PRKRIP1Q9H875 184 aaPredicted RBP18.05■□□□□ 0.48
NFKB1-201ENST00000226574 ZBTB4Q9P1Z0 1013 aaPredicted RBP18.02■□□□□ 0.48
NFKB1-201ENST00000226574 RCAN3Q9UKA8 241 aa18.01■□□□□ 0.47
NFKB1-201ENST00000226574 PLIN1O60240 522 aa18.01■□□□□ 0.47
NFKB1-201ENST00000226574 SPRYD3Q8NCJ5 442 aa18.01■□□□□ 0.47
NFKB1-201ENST00000226574 DDRGK1Q96HY6 314 aa18.01■□□□□ 0.47
NFKB1-201ENST00000226574 PPM1GO15355 546 aaPredicted RBP18■□□□□ 0.47
NFKB1-201ENST00000226574 EIF4G1Q04637 1599 aaKnown RBP18■□□□□ 0.47
NFKB1-201ENST00000226574 SLC4A3P48751 1232 aa18■□□□□ 0.47
NFKB1-201ENST00000226574 PHLDB1Q86UU1 1377 aa17.99■□□□□ 0.47
NFKB1-201ENST00000226574 NUDCQ9Y266 331 aa17.98■□□□□ 0.47
NFKB1-201ENST00000226574 CCDC184Q52MB2 194 aa17.98■□□□□ 0.47
NFKB1-201ENST00000226574 PLPPR3Q6T4P5 718 aa17.97■□□□□ 0.47
NFKB1-201ENST00000226574 SMARCA2P51531 1590 aa17.97■□□□□ 0.47
NFKB1-201ENST00000226574 KIF21BO75037 1637 aa17.96■□□□□ 0.47
NFKB1-201ENST00000226574 IPO9Q96P70 1041 aaKnown RBP17.96■□□□□ 0.47
NFKB1-201ENST00000226574 SMARCA4P51532 1647 aa17.95■□□□□ 0.46
NFKB1-201ENST00000226574 ATAD2BQ9ULI0 1458 aa17.95■□□□□ 0.46
NFKB1-201ENST00000226574 EXOC6Q8TAG9 804 aa17.94■□□□□ 0.46
NFKB1-201ENST00000226574 ST20-MTHFSA0A0A6YYL1 179 aa17.93■□□□□ 0.46
NFKB1-201ENST00000226574 STAG3Q9UJ98 1225 aa17.92■□□□□ 0.46
NFKB1-201ENST00000226574 FMN1Q68DA7 1419 aa17.92■□□□□ 0.46
NFKB1-201ENST00000226574 ARAP1Q96P48 1450 aa17.92■□□□□ 0.46
NFKB1-201ENST00000226574 WASHC2AQ641Q2 1341 aa17.91■□□□□ 0.46
NFKB1-201ENST00000226574 ERICH6BQ5W0A0 696 aa17.91■□□□□ 0.46
NFKB1-201ENST00000226574 SLKQ9H2G2 1235 aaPredicted RBP17.91■□□□□ 0.46
NFKB1-201ENST00000226574 BECN1Q14457 450 aa17.89■□□□□ 0.46
NFKB1-201ENST00000226574 ANP32BQ92688 251 aaKnown RBP17.89■□□□□ 0.45
NFKB1-201ENST00000226574 NUP155O75694 1391 aa17.88■□□□□ 0.45
NFKB1-201ENST00000226574 IGF1RP08069 1367 aa17.88■□□□□ 0.45
NFKB1-201ENST00000226574 TPRNQ4KMQ1 711 aa17.88■□□□□ 0.45
NFKB1-201ENST00000226574 ZNF644Q9H582 1327 aaPredicted RBP17.86■□□□□ 0.45
NFKB1-201ENST00000226574 CCDC146Q8IYE0 955 aa17.86■□□□□ 0.45
NFKB1-201ENST00000226574 PLEKHG5O94827 1062 aa17.85■□□□□ 0.45
NFKB1-201ENST00000226574 TMF1P82094 1093 aa17.85■□□□□ 0.45
NFKB1-201ENST00000226574 PAK3O75914 559 aaPredicted RBP17.85■□□□□ 0.45
NFKB1-201ENST00000226574 SAFB2Q14151 953 aaKnown RBP eCLIP17.85■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 60.4 ms