RNA–Protein interactions for RNA: ENST00000211998.9

VCL-201, Transcript of vinculin, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VCL, Length 5,490 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-201ENST00000211998 STAG3Q9UJ98 1225 aa13.83□□□□□ -0.2
VCL-201ENST00000211998 TMC1Q8TDI8 760 aa13.82□□□□□ -0.2
VCL-201ENST00000211998 TSHZ2Q9NRE2 1034 aa13.82□□□□□ -0.2
VCL-201ENST00000211998 ZCCHC6Q5VYS8 1495 aaKnown RBP13.82□□□□□ -0.2
VCL-201ENST00000211998 PPP4R2Q9NY27 417 aa13.81□□□□□ -0.2
VCL-201ENST00000211998 DNTTIP2Q5QJE6 756 aaKnown RBP13.8□□□□□ -0.2
VCL-201ENST00000211998 AMER1Q5JTC6 1135 aaPredicted RBP13.8□□□□□ -0.2
VCL-201ENST00000211998 CHGAP10645 457 aaKnown RBP13.78□□□□□ -0.2
VCL-201ENST00000211998 HIRIP3Q9BW71 556 aaPredicted RBP13.78□□□□□ -0.2
VCL-201ENST00000211998 PTMAP06454 111 aaKnown RBP13.77□□□□□ -0.2
VCL-201ENST00000211998 GOLGA6L22H0YM25 854 aa13.76□□□□□ -0.21
VCL-201ENST00000211998 ARID4BQ4LE39 1312 aaPredicted RBP13.76□□□□□ -0.21
VCL-201ENST00000211998 CCDC180Q9P1Z9 1646 aa13.75□□□□□ -0.21
VCL-201ENST00000211998 NCLP19338 710 aaKnown RBP13.74□□□□□ -0.21
VCL-201ENST00000211998 B4GALNT3Q6L9W6 998 aa13.72□□□□□ -0.21
VCL-201ENST00000211998 TSPY4P0CV99 314 aa13.7□□□□□ -0.22
VCL-201ENST00000211998 TSPY10P0CW01 314 aa13.7□□□□□ -0.22
VCL-201ENST00000211998 L1TD1Q5T7N2 865 aaKnown RBP13.7□□□□□ -0.22
VCL-201ENST00000211998 MYO15BQ96JP2 1530 aa13.7□□□□□ -0.22
VCL-201ENST00000211998 MTUS2Q5JR59 1369 aa13.68□□□□□ -0.22
VCL-201ENST00000211998 VSIG10Q8N0Z9 540 aa13.66□□□□□ -0.22
VCL-201ENST00000211998 PNNQ9H307 717 aaKnown RBP13.65□□□□□ -0.22
VCL-201ENST00000211998 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.65□□□□□ -0.22
VCL-201ENST00000211998 CHIC2Q9UKJ5 165 aa13.64□□□□□ -0.23
VCL-201ENST00000211998 WDR43Q15061 677 aaKnown RBP eCLIP13.64□□□□□ -0.23
VCL-201ENST00000211998 CHMP7Q8WUX9 453 aaPredicted RBP13.63□□□□□ -0.23
VCL-201ENST00000211998 MSNP26038 577 aaKnown RBP13.63□□□□□ -0.23
VCL-201ENST00000211998 SENP3-EIF4A1A0A087X0R7 540 aa13.62□□□□□ -0.23
VCL-201ENST00000211998 RB1CC1Q8TDY2 1594 aa13.61□□□□□ -0.23
VCL-201ENST00000211998 PRKCSHP14314 528 aaPredicted RBP13.6□□□□□ -0.23
VCL-201ENST00000211998 ARID3AQ99856 593 aa13.6□□□□□ -0.23
VCL-201ENST00000211998 HSP90AA2PQ14568 343 aaPredicted RBP13.6□□□□□ -0.23
VCL-201ENST00000211998 EEA1Q15075 1411 aa13.6□□□□□ -0.23
VCL-201ENST00000211998 RSPH6AQ9H0K4 717 aa13.59□□□□□ -0.23
VCL-201ENST00000211998 CLIP1P30622 1438 aa13.59□□□□□ -0.23
VCL-201ENST00000211998 RSF1Q96T23 1441 aaPredicted RBP13.59□□□□□ -0.23
VCL-201ENST00000211998 PLPPR3Q6T4P5 718 aa13.58□□□□□ -0.24
VCL-201ENST00000211998 RGS3P49796 1198 aa13.58□□□□□ -0.24
VCL-201ENST00000211998 EIF4G2P78344 907 aaKnown RBP eCLIP13.57□□□□□ -0.242e-6■■■□□ 16.3
VCL-201ENST00000211998 PLCB2Q00722 1185 aa13.54□□□□□ -0.24
VCL-201ENST00000211998 TPRNQ4KMQ1 711 aa13.54□□□□□ -0.24
VCL-201ENST00000211998 KDM2AQ9Y2K7 1162 aa13.54□□□□□ -0.24
VCL-201ENST00000211998 CHAF1AQ13111 956 aaPredicted RBP13.53□□□□□ -0.24
VCL-201ENST00000211998 IPO9Q96P70 1041 aaKnown RBP13.53□□□□□ -0.24
VCL-201ENST00000211998 GOLGA3Q08378 1498 aa13.52□□□□□ -0.24
VCL-201ENST00000211998 MYH16Q9H6N6 1097 aa13.52□□□□□ -0.24
VCL-201ENST00000211998 PLEKHD1A6NEE1 506 aa13.5□□□□□ -0.25
VCL-201ENST00000211998 HSP90AB1P08238 724 aaKnown RBP13.49□□□□□ -0.25
VCL-201ENST00000211998 TIMELESSQ9UNS1 1208 aa13.48□□□□□ -0.25
VCL-201ENST00000211998 TNNT3P45378 269 aaPredicted RBP13.48□□□□□ -0.25
VCL-201ENST00000211998 PPP1R15AO75807 674 aaPredicted RBP13.47□□□□□ -0.25
VCL-201ENST00000211998 GZF1Q9H116 711 aaPredicted RBP13.47□□□□□ -0.25
VCL-201ENST00000211998 SPRYD3Q8NCJ5 442 aa13.46□□□□□ -0.25
VCL-201ENST00000211998 ANO8Q9HCE9 1232 aaPredicted RBP13.46□□□□□ -0.25
VCL-201ENST00000211998 ZBTB7CA1YPR0 619 aa13.46□□□□□ -0.26
VCL-201ENST00000211998 PKNOX2Q96KN3 472 aa13.45□□□□□ -0.26
VCL-201ENST00000211998 CDCA8Q53HL2 280 aa13.45□□□□□ -0.26
VCL-201ENST00000211998 GOLGA6L3A6NEY3 463 aa13.44□□□□□ -0.26
VCL-201ENST00000211998 RRP7BPQ9NSQ0 103 aa13.44□□□□□ -0.26
VCL-201ENST00000211998 NACADO15069 1562 aa13.44□□□□□ -0.26
VCL-201ENST00000211998 CCER2I3L3R5 266 aa13.43□□□□□ -0.26
VCL-201ENST00000211998 ZRSR1Q15695 479 aaKnown RBP13.43□□□□□ -0.26
VCL-201ENST00000211998 BAZ1BQ9UIG0 1483 aaKnown RBP13.43□□□□□ -0.26
VCL-201ENST00000211998 HSCBQ8IWL3 235 aa13.43□□□□□ -0.26
VCL-201ENST00000211998 WRNQ14191 1432 aaPredicted RBP eCLIP13.43□□□□□ -0.26
VCL-201ENST00000211998 KIF27Q86VH2 1401 aa13.42□□□□□ -0.26
VCL-201ENST00000211998 CEP162Q5TB80 1403 aa13.42□□□□□ -0.26
VCL-201ENST00000211998 USP35Q9P2H5 1018 aa13.42□□□□□ -0.26
VCL-201ENST00000211998 KCNH8Q96L42 1107 aa13.41□□□□□ -0.26
VCL-201ENST00000211998 CFAP53Q96M91 514 aa13.41□□□□□ -0.26
VCL-201ENST00000211998 TCERG1O14776 1098 aaKnown RBP13.39□□□□□ -0.27
VCL-201ENST00000211998 SLKQ9H2G2 1235 aaPredicted RBP13.39□□□□□ -0.27
VCL-201ENST00000211998 GSE1Q14687 1217 aa13.39□□□□□ -0.27
VCL-201ENST00000211998 CASC1Q6TDU7 716 aa13.39□□□□□ -0.27
VCL-201ENST00000211998 CEP164Q9UPV0 1460 aa13.38□□□□□ -0.27
VCL-201ENST00000211998 CFDP1Q9UEE9 299 aaPredicted RBP13.38□□□□□ -0.27
VCL-201ENST00000211998 GOLGA6L6A8MZA4 724 aa13.38□□□□□ -0.27
VCL-201ENST00000211998 FANCIQ9NVI1 1328 aa13.38□□□□□ -0.27
VCL-201ENST00000211998 A0A0U1RQG5 324 aaPredicted RBP13.37□□□□□ -0.27
VCL-201ENST00000211998 KIAA2012Q0VF49 1180 aa13.36□□□□□ -0.27
VCL-201ENST00000211998 C14orf37Q86TY3 774 aa13.36□□□□□ -0.27
VCL-201ENST00000211998 FTSJ3Q8IY81 847 aaKnown RBP13.36□□□□□ -0.27
VCL-201ENST00000211998 TNIKQ9UKE5 1360 aa13.35□□□□□ -0.27
VCL-201ENST00000211998 KNSTRNQ9Y448 316 aa13.34□□□□□ -0.27
VCL-201ENST00000211998 NRDCO43847 1150 aa13.34□□□□□ -0.27
VCL-201ENST00000211998 PODXL2Q9NZ53 605 aa13.34□□□□□ -0.27
VCL-201ENST00000211998 GBP4Q96PP9 640 aa13.33□□□□□ -0.27
VCL-201ENST00000211998 SIN3AQ96ST3 1273 aa13.33□□□□□ -0.28
VCL-201ENST00000211998 A0A0G2JS52 829 aa13.33□□□□□ -0.28
VCL-201ENST00000211998 FRAT1Q92837 279 aaPredicted RBP13.33□□□□□ -0.28
VCL-201ENST00000211998 DRC7Q8IY82 874 aa13.33□□□□□ -0.28
VCL-201ENST00000211998 RGL3Q3MIN7 710 aa13.32□□□□□ -0.28
VCL-201ENST00000211998 PTMSP20962 102 aa13.32□□□□□ -0.28
VCL-201ENST00000211998 CARD11Q9BXL7 1154 aa13.3□□□□□ -0.28
VCL-201ENST00000211998 HAP1P54257 671 aaPredicted RBP13.28□□□□□ -0.28
VCL-201ENST00000211998 ERCC6Q03468 1493 aa13.28□□□□□ -0.28
VCL-201ENST00000211998 NUDCQ9Y266 331 aa13.27□□□□□ -0.28
VCL-201ENST00000211998 BAZ1AQ9NRL2 1556 aaPredicted RBP13.27□□□□□ -0.29
VCL-201ENST00000211998 FHAD1B1AJZ9 1412 aa13.27□□□□□ -0.29
VCL-201ENST00000211998 MAPK8IP3Q9UPT6 1336 aa13.26□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 90.8 ms