RNA–Protein interactions for RNA: ENST00000540109.5

PTPRD-214, Transcript of protein tyrosine phosphatase, receptor type D, humanhuman

APPRIS P1 TSL 5 BASIC

Gene PTPRD, Length 6,210 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRD-214ENST00000540109 CEP250Q9BV73 2442 aa4.61□□□□□ -1.67
PTPRD-214ENST00000540109 A0A0J9YXV3 536 aa4.61□□□□□ -1.67
PTPRD-214ENST00000540109 A0A0J9YY99 117 aa4.61□□□□□ -1.67
PTPRD-214ENST00000540109 IGHV3-11P01762 117 aa4.61□□□□□ -1.67
PTPRD-214ENST00000540109 TIRAPP58753 221 aa4.6□□□□□ -1.67
PTPRD-214ENST00000540109 RPL39P62891 51 aaKnown RBP4.6□□□□□ -1.67
PTPRD-214ENST00000540109 MRGPRG-AS1Q2M3A8 158 aa4.6□□□□□ -1.67
PTPRD-214ENST00000540109 C9orf47Q6ZRZ4 202 aa4.6□□□□□ -1.67
PTPRD-214ENST00000540109 NEXN-AS1Q8NBZ9 246 aa4.6□□□□□ -1.67
PTPRD-214ENST00000540109 MDFIQ99750 246 aa4.6□□□□□ -1.67
PTPRD-214ENST00000540109 PRR14LQ5THK1 2151 aa4.6□□□□□ -1.67
PTPRD-214ENST00000540109 TRBV6-5A0A0K0K1A5 114 aa4.6□□□□□ -1.67
PTPRD-214ENST00000540109 LECT2O14960 151 aa4.6□□□□□ -1.67
PTPRD-214ENST00000540109 BRI3O95415 125 aa4.6□□□□□ -1.67
PTPRD-214ENST00000540109 PRR4Q16378 134 aa4.6□□□□□ -1.67
PTPRD-214ENST00000540109 IGHV3-38A0A0C4DH36 116 aa4.6□□□□□ -1.67
PTPRD-214ENST00000540109 HOXB4P17483 251 aaPredicted RBP4.6□□□□□ -1.67
PTPRD-214ENST00000540109 COX8CQ7Z4L0 72 aa4.6□□□□□ -1.67
PTPRD-214ENST00000540109 ZNF491Q8N8L2 437 aa4.6□□□□□ -1.67
PTPRD-214ENST00000540109 PLCE1Q9P212 2302 aa4.6□□□□□ -1.67
PTPRD-214ENST00000540109 A0A087WVE0 104 aa4.6□□□□□ -1.67
PTPRD-214ENST00000540109 OVOL3O00110 214 aa4.6□□□□□ -1.67
PTPRD-214ENST00000540109 IGLV11-55A0A075B6I3 123 aa4.59□□□□□ -1.67
PTPRD-214ENST00000540109 TRBV10-1A0A0K0K1A3 114 aa4.59□□□□□ -1.67
PTPRD-214ENST00000540109 CDK2AP2O75956 126 aa4.59□□□□□ -1.67
PTPRD-214ENST00000540109 PRR15LQ9BU68 103 aa4.59□□□□□ -1.67
PTPRD-214ENST00000540109 WI2-2373I1.2A0A1W2PRP0 233 aa4.59□□□□□ -1.67
PTPRD-214ENST00000540109 CHKB-CPT1BH3BT56 60 aa4.59□□□□□ -1.67
PTPRD-214ENST00000540109 PATE2Q6UY27 113 aa4.59□□□□□ -1.67
PTPRD-214ENST00000540109 ZNF580Q9UK33 172 aa4.59□□□□□ -1.67
PTPRD-214ENST00000540109 GRNP28799 593 aaKnown RBP4.59□□□□□ -1.67
PTPRD-214ENST00000540109 NANOS2P60321 138 aaKnown RBP4.59□□□□□ -1.67
PTPRD-214ENST00000540109 SBSPONQ8IVN8 264 aa4.59□□□□□ -1.67
PTPRD-214ENST00000540109 IGHV4OR15-8A0A075B7B6 117 aa4.59□□□□□ -1.68
PTPRD-214ENST00000540109 A0A087WW49 117 aa4.59□□□□□ -1.68
PTPRD-214ENST00000540109 A6NED7 52 aa4.59□□□□□ -1.68
PTPRD-214ENST00000540109 LYNX1G3V0Z9 82 aa4.59□□□□□ -1.68
PTPRD-214ENST00000540109 H3BS24 57 aa4.59□□□□□ -1.68
PTPRD-214ENST00000540109 LYNX1P0DP58 116 aa4.59□□□□□ -1.68
PTPRD-214ENST00000540109 C20orf203Q8NBC4 194 aa4.59□□□□□ -1.68
PTPRD-214ENST00000540109 TPSG1Q9NRR2 321 aa4.59□□□□□ -1.68
PTPRD-214ENST00000540109 ICE1Q9Y2F5 2266 aa4.58□□□□□ -1.68
PTPRD-214ENST00000540109 LY6EQ16553 131 aa4.58□□□□□ -1.68
PTPRD-214ENST00000540109 K7EIM0 57 aa4.58□□□□□ -1.68
PTPRD-214ENST00000540109 NREPQ16612 68 aa4.58□□□□□ -1.68
PTPRD-214ENST00000540109 URB1-AS1Q96HZ7 61 aa4.58□□□□□ -1.68
PTPRD-214ENST00000540109 RIF1Q5UIP0 2472 aaKnown RBP4.58□□□□□ -1.68
PTPRD-214ENST00000540109 IGHV4-28A0A0C4DH34 117 aa4.58□□□□□ -1.68
PTPRD-214ENST00000540109 DPH3Q96FX2 82 aa4.58□□□□□ -1.68
PTPRD-214ENST00000540109 IGHV3-53P01767 116 aa4.58□□□□□ -1.68
PTPRD-214ENST00000540109 ZNF80P51504 273 aaPredicted RBP4.58□□□□□ -1.68
PTPRD-214ENST00000540109 C15orf32Q32M92 178 aa4.58□□□□□ -1.68
PTPRD-214ENST00000540109 SCXQ7RTU7 201 aa4.58□□□□□ -1.68
PTPRD-214ENST00000540109 C2orf48Q96LS8 159 aa4.58□□□□□ -1.68
PTPRD-214ENST00000540109 CADP27708 2225 aa4.58□□□□□ -1.68
PTPRD-214ENST00000540109 ZFHX2Q9C0A1 2572 aaPredicted RBP4.58□□□□□ -1.68
PTPRD-214ENST00000540109 TET2Q6N021 2002 aaPredicted RBP4.58□□□□□ -1.68
PTPRD-214ENST00000540109 E7EUB6 86 aa4.58□□□□□ -1.68
PTPRD-214ENST00000540109 SND1-IT1Q9HBX3 110 aa4.58□□□□□ -1.68
PTPRD-214ENST00000540109 IGHV3OR16-10A0A075B7F0 116 aa4.57□□□□□ -1.68
PTPRD-214ENST00000540109 CXCL6P80162 114 aa4.57□□□□□ -1.68
PTPRD-214ENST00000540109 ESM1Q9NQ30 184 aa4.57□□□□□ -1.68
PTPRD-214ENST00000540109 TRGV2A0A075B6R0 118 aa4.57□□□□□ -1.68
PTPRD-214ENST00000540109 NCR3O14931 201 aa4.57□□□□□ -1.68
PTPRD-214ENST00000540109 COX7B2Q8TF08 81 aa4.57□□□□□ -1.68
PTPRD-214ENST00000540109 CCL19Q99731 98 aa4.57□□□□□ -1.68
PTPRD-214ENST00000540109 PTPRQQ9UMZ3 2332 aa4.57□□□□□ -1.68
PTPRD-214ENST00000540109 IGKV1-17P01599 117 aa4.57□□□□□ -1.68
PTPRD-214ENST00000540109 FAM19A3Q7Z5A8 133 aa4.57□□□□□ -1.68
PTPRD-214ENST00000540109 ARFGEF3Q5TH69 2177 aa4.57□□□□□ -1.68
PTPRD-214ENST00000540109 RP1L1Q8IWN7 2480 aaPredicted RBP4.57□□□□□ -1.68
PTPRD-214ENST00000540109 IGHV3-16A0A0C4DH30 117 aa4.57□□□□□ -1.68
PTPRD-214ENST00000540109 K7EMT4 169 aa4.57□□□□□ -1.68
PTPRD-214ENST00000540109 IGHV3-30P01768 117 aa4.57□□□□□ -1.68
PTPRD-214ENST00000540109 IGHV3-30-5P0DP03 117 aa4.57□□□□□ -1.68
PTPRD-214ENST00000540109 LMO4P61968 165 aa4.57□□□□□ -1.68
PTPRD-214ENST00000540109 RITA1Q96K30 269 aa4.57□□□□□ -1.68
PTPRD-214ENST00000540109 ACACAQ13085 2346 aa4.56□□□□□ -1.68
PTPRD-214ENST00000540109 GNLYP22749 145 aa4.56□□□□□ -1.68
PTPRD-214ENST00000540109 POLEQ07864 2286 aa4.56□□□□□ -1.68
PTPRD-214ENST00000540109 IBA57-AS1B1ANH7 110 aa4.56□□□□□ -1.68
PTPRD-214ENST00000540109 NDUFA1O15239 70 aa4.56□□□□□ -1.68
PTPRD-214ENST00000540109 GNRH2O43555 120 aa4.56□□□□□ -1.68
PTPRD-214ENST00000540109 CEMP1Q6PRD7 247 aaPredicted RBP4.56□□□□□ -1.68
PTPRD-214ENST00000540109 TRGV4A0A0C4DH28 118 aa4.56□□□□□ -1.68
PTPRD-214ENST00000540109 IGKV2D-29A0A075B6S2 120 aaPredicted RBP4.56□□□□□ -1.68
PTPRD-214ENST00000540109 IGKV2-29A2NJV5 120 aaPredicted RBP4.56□□□□□ -1.68
PTPRD-214ENST00000540109 ANKHD1Q8IWZ3 2542 aaKnown RBP4.56□□□□□ -1.68
PTPRD-214ENST00000540109 SLPIP03973 132 aa4.56□□□□□ -1.68
PTPRD-214ENST00000540109 LINC01546A6NGU7 62 aa4.55□□□□□ -1.68
PTPRD-214ENST00000540109 Q6ZS46 218 aa4.55□□□□□ -1.68
PTPRD-214ENST00000540109 CCDC140Q96MF4 163 aa4.55□□□□□ -1.68
PTPRD-214ENST00000540109 LINC01561Q8N1V8 128 aa4.55□□□□□ -1.68
PTPRD-214ENST00000540109 Q8N9W7 124 aa4.55□□□□□ -1.68
PTPRD-214ENST00000540109 IGHV7-81A0A0B4J1V7 117 aa4.55□□□□□ -1.68
PTPRD-214ENST00000540109 TMEM223A0PJW6 202 aa4.55□□□□□ -1.68
PTPRD-214ENST00000540109 IGHV3-30-3P0DP02 117 aa4.55□□□□□ -1.68
PTPRD-214ENST00000540109 SAA4P35542 130 aa4.55□□□□□ -1.68
PTPRD-214ENST00000540109 C7orf69Q9H7B7 122 aa4.55□□□□□ -1.68
PTPRD-214ENST00000540109 LAMA1P25391 3075 aa4.55□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 105.8 ms