RNA–Protein interactions for RNA: ENST00000391814.5

SHANK1-204, Transcript of SH3 and multiple ankyrin repeat domains 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHANK1, Length 6,622 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1-204ENST00000391814 FAM231AP0DMU4 169 aa12.35□□□□□ -0.43
SHANK1-204ENST00000391814 FAM231CP0DMU5 169 aa12.35□□□□□ -0.43
SHANK1-204ENST00000391814 C1orf195Q5TG92 126 aa12.35□□□□□ -0.43
SHANK1-204ENST00000391814 TMEM223A0PJW6 202 aa12.35□□□□□ -0.43
SHANK1-204ENST00000391814 PI4KAP42356 2102 aa12.35□□□□□ -0.43
SHANK1-204ENST00000391814 HIST2H2BDQ6DRA6 164 aa12.35□□□□□ -0.43
SHANK1-204ENST00000391814 IGKV1D-37A0A075B6S9 117 aa12.34□□□□□ -0.43
SHANK1-204ENST00000391814 ANAPC1Q9H1A4 1944 aa12.34□□□□□ -0.43
SHANK1-204ENST00000391814 J3QKU1 62 aa12.33□□□□□ -0.43
SHANK1-204ENST00000391814 CXCL5P42830 114 aa12.33□□□□□ -0.43
SHANK1-204ENST00000391814 C20orf203Q8NBC4 194 aa12.33□□□□□ -0.43
SHANK1-204ENST00000391814 MBD6Q96DN6 1003 aa12.33□□□□□ -0.44
SHANK1-204ENST00000391814 ELANEP08246 267 aa12.33□□□□□ -0.44
SHANK1-204ENST00000391814 C4orf48Q5BLP8 95 aa12.33□□□□□ -0.44
SHANK1-204ENST00000391814 ZNF295-AS1Q8N0V1 137 aa12.33□□□□□ -0.44
SHANK1-204ENST00000391814 FANCD2OSQ96PS1 177 aa12.33□□□□□ -0.44
SHANK1-204ENST00000391814 CACNA1EQ15878 2313 aa12.33□□□□□ -0.44
SHANK1-204ENST00000391814 DEFB4AO15263 64 aa12.33□□□□□ -0.44
SHANK1-204ENST00000391814 IGHV4-59P01825 116 aa12.33□□□□□ -0.44
SHANK1-204ENST00000391814 CENPVL3A0A0U1RRI6 287 aa12.32□□□□□ -0.44
SHANK1-204ENST00000391814 LRRC75A-AS1Q8N1F1 130 aa12.32□□□□□ -0.44
SHANK1-204ENST00000391814 SPTBN1Q01082 2364 aaKnown RBP12.32□□□□□ -0.44
SHANK1-204ENST00000391814 TMEM263Q8WUH6 116 aaKnown RBP12.32□□□□□ -0.44
SHANK1-204ENST00000391814 SDK2Q58EX2 2172 aa12.32□□□□□ -0.44
SHANK1-204ENST00000391814 DOCK8Q8NF50 2099 aa12.32□□□□□ -0.44
SHANK1-204ENST00000391814 FAM215AQ9Y5M1 114 aa12.32□□□□□ -0.44
SHANK1-204ENST00000391814 F8W735 103 aaPredicted RBP12.31□□□□□ -0.44
SHANK1-204ENST00000391814 BPY2O14599 106 aa12.31□□□□□ -0.44
SHANK1-204ENST00000391814 CFAP126Q5VTH2 177 aa12.31□□□□□ -0.44
SHANK1-204ENST00000391814 COX7BP24311 80 aa12.31□□□□□ -0.44
SHANK1-204ENST00000391814 TRBV30A0A0K0K1B3 111 aa12.31□□□□□ -0.44
SHANK1-204ENST00000391814 A0A096LNI7 61 aa12.31□□□□□ -0.44
SHANK1-204ENST00000391814 CADP27708 2225 aa12.3□□□□□ -0.44
SHANK1-204ENST00000391814 DEFB112Q30KQ8 113 aa12.3□□□□□ -0.44
SHANK1-204ENST00000391814 CASC2Q6XLA1 102 aa12.3□□□□□ -0.44
SHANK1-204ENST00000391814 SERP2Q8N6R1 65 aa12.3□□□□□ -0.44
SHANK1-204ENST00000391814 NDUFA1O15239 70 aa12.29□□□□□ -0.44
SHANK1-204ENST00000391814 A0A0J9YWU9 116 aa12.29□□□□□ -0.44
SHANK1-204ENST00000391814 HRCT1Q6UXD1 115 aa12.29□□□□□ -0.44
SHANK1-204ENST00000391814 U3KQK5 164 aa12.29□□□□□ -0.44
SHANK1-204ENST00000391814 COL4A3Q01955 1670 aa12.29□□□□□ -0.44
SHANK1-204ENST00000391814 SIRPDQ9H106 197 aa12.29□□□□□ -0.44
SHANK1-204ENST00000391814 TIMM17BO60830 172 aa12.28□□□□□ -0.44
SHANK1-204ENST00000391814 HHLA3Q9XRX5 114 aa12.28□□□□□ -0.44
SHANK1-204ENST00000391814 CCL24O00175 119 aa12.28□□□□□ -0.44
SHANK1-204ENST00000391814 COX7CP15954 63 aa12.28□□□□□ -0.44
SHANK1-204ENST00000391814 Q8N9W7 124 aa12.28□□□□□ -0.44
SHANK1-204ENST00000391814 PDE6GP18545 87 aa12.28□□□□□ -0.44
SHANK1-204ENST00000391814 KIAA1549LQ6ZVL6 1849 aa12.28□□□□□ -0.44
SHANK1-204ENST00000391814 ATP5EP2Q5VTU8 51 aa12.27□□□□□ -0.44
SHANK1-204ENST00000391814 C5orf56Q8N8D9 126 aa12.27□□□□□ -0.44
SHANK1-204ENST00000391814 P0C879 139 aa12.27□□□□□ -0.44
SHANK1-204ENST00000391814 IGHV4-38-2P0DP08 117 aa12.27□□□□□ -0.45
SHANK1-204ENST00000391814 SPTBN2O15020 2390 aa12.27□□□□□ -0.45
SHANK1-204ENST00000391814 Q6ZPA2 131 aa12.26□□□□□ -0.45
SHANK1-204ENST00000391814 RNF185Q96GF1 192 aa12.26□□□□□ -0.45
SHANK1-204ENST00000391814 SPAG11BQ08648 103 aa12.26□□□□□ -0.45
SHANK1-204ENST00000391814 ZNF22P17026 224 aaPredicted RBP12.25□□□□□ -0.45
SHANK1-204ENST00000391814 J3QLI3 93 aa12.25□□□□□ -0.45
SHANK1-204ENST00000391814 CCL18P55774 89 aa12.25□□□□□ -0.45
SHANK1-204ENST00000391814 NUP210Q8TEM1 1887 aaPredicted RBP12.25□□□□□ -0.45
SHANK1-204ENST00000391814 ZNF106Q9H2Y7 1883 aaKnown RBP12.25□□□□□ -0.45
SHANK1-204ENST00000391814 LINC00467Q9BRT7 94 aa12.25□□□□□ -0.45
SHANK1-204ENST00000391814 ATP5EP56381 51 aaPredicted RBP12.25□□□□□ -0.45
SHANK1-204ENST00000391814 ABCA1O95477 2261 aa12.25□□□□□ -0.45
SHANK1-204ENST00000391814 POLEQ07864 2286 aa12.24□□□□□ -0.45
SHANK1-204ENST00000391814 LINC00308Q8TCZ7 52 aa12.24□□□□□ -0.45
SHANK1-204ENST00000391814 IGHV4-30-2A0A087WSY4 118 aa12.24□□□□□ -0.45
SHANK1-204ENST00000391814 VPREB3Q9UKI3 123 aa12.24□□□□□ -0.45
SHANK1-204ENST00000391814 BLCAPP62952 87 aa12.24□□□□□ -0.45
SHANK1-204ENST00000391814 CRIP1P50238 77 aa12.24□□□□□ -0.45
SHANK1-204ENST00000391814 GVINP1Q7Z2Y8 2422 aa12.23□□□□□ -0.45
SHANK1-204ENST00000391814 SMIM9A6NGZ8 99 aa12.23□□□□□ -0.45
SHANK1-204ENST00000391814 UNQ9165/PRO28630Q6UXU0 137 aa12.23□□□□□ -0.45
SHANK1-204ENST00000391814 USP17L23D6RBM5 183 aa12.23□□□□□ -0.45
SHANK1-204ENST00000391814 IMUPQ9GZP8 106 aa12.23□□□□□ -0.45
SHANK1-204ENST00000391814 IGKV2-24A0A0C4DH68 120 aa12.23□□□□□ -0.45
SHANK1-204ENST00000391814 K7ENP7 123 aa12.22□□□□□ -0.45
SHANK1-204ENST00000391814 BRWD1-AS2P59051 145 aa12.22□□□□□ -0.45
SHANK1-204ENST00000391814 H7C423 109 aa12.22□□□□□ -0.45
SHANK1-204ENST00000391814 GRNP28799 593 aaKnown RBP12.22□□□□□ -0.45
SHANK1-204ENST00000391814 EP300Q09472 2414 aaPredicted RBP12.22□□□□□ -0.45
SHANK1-204ENST00000391814 IGFL3Q6UXB1 125 aa12.22□□□□□ -0.45
SHANK1-204ENST00000391814 WFDC10BQ8IUB3 73 aa12.22□□□□□ -0.45
SHANK1-204ENST00000391814 ABCA4P78363 2273 aa12.21□□□□□ -0.45
SHANK1-204ENST00000391814 IGLV4-3A0A075B6K6 122 aa12.21□□□□□ -0.45
SHANK1-204ENST00000391814 ZFAND2AQ8N6M9 145 aa12.21□□□□□ -0.46
SHANK1-204ENST00000391814 A8MZ25 164 aa12.2□□□□□ -0.46
SHANK1-204ENST00000391814 KLK12Q9UKR0 248 aa12.2□□□□□ -0.46
SHANK1-204ENST00000391814 ALPK3Q96L96 1907 aa12.2□□□□□ -0.46
SHANK1-204ENST00000391814 C20orf173Q96LM9 149 aa12.2□□□□□ -0.46
SHANK1-204ENST00000391814 C1orf229Q6ZS94 237 aaPredicted RBP12.2□□□□□ -0.46
SHANK1-204ENST00000391814 Q8N976 141 aa12.2□□□□□ -0.46
SHANK1-204ENST00000391814 CDKN2A-AS1Q9UH64 79 aa12.2□□□□□ -0.46
SHANK1-204ENST00000391814 WT1P19544 449 aaPredicted RBP12.19□□□□□ -0.46
SHANK1-204ENST00000391814 GPHB5Q86YW7 130 aa12.19□□□□□ -0.46
SHANK1-204ENST00000391814 SPART-AS1P0CW21 52 aa12.19□□□□□ -0.46
SHANK1-204ENST00000391814 IGF1P05019 195 aa12.19□□□□□ -0.46
SHANK1-204ENST00000391814 TMEM131Q92545 1883 aa12.19□□□□□ -0.46
SHANK1-204ENST00000391814 NDUFC1O43677 76 aa12.18□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 8.6 ms