RNA–Protein interactions for RNA: ENST00000264555.9

PHRF1-201, Transcript of PHD and ring finger domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PHRF1, Length 5,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHRF1-201ENST00000264555 TIMM21Q9BVV7 248 aa13.04□□□□□ -0.32
PHRF1-201ENST00000264555 MED12LQ86YW9 2145 aa13.03□□□□□ -0.32
PHRF1-201ENST00000264555 FOXE3Q13461 319 aa13.03□□□□□ -0.32
PHRF1-201ENST00000264555 C1orf159Q96HA4 380 aa13.03□□□□□ -0.32
PHRF1-201ENST00000264555 A0A0U1RRA0 63 aa13.03□□□□□ -0.32
PHRF1-201ENST00000264555 M0R2P5 195 aa13.03□□□□□ -0.32
PHRF1-201ENST00000264555 SRSF2Q01130 221 aaKnown RBP13.03□□□□□ -0.32
PHRF1-201ENST00000264555 FSTL3O95633 263 aa13.02□□□□□ -0.32
PHRF1-201ENST00000264555 ZNF48Q96MX3 618 aaPredicted RBP13.02□□□□□ -0.32
PHRF1-201ENST00000264555 F6UB75 175 aa13.02□□□□□ -0.32
PHRF1-201ENST00000264555 LGALS1P09382 135 aaKnown RBP13.02□□□□□ -0.32
PHRF1-201ENST00000264555 BLCAPP62952 87 aa13.02□□□□□ -0.32
PHRF1-201ENST00000264555 IGKV1D-37A0A075B6S9 117 aa13.02□□□□□ -0.33
PHRF1-201ENST00000264555 SPXQ9BT56 116 aa13.02□□□□□ -0.33
PHRF1-201ENST00000264555 ZNF747Q9BV97 191 aa13.02□□□□□ -0.33
PHRF1-201ENST00000264555 J3QKU1 62 aa13.02□□□□□ -0.33
PHRF1-201ENST00000264555 FOXI2Q6ZQN5 318 aa13.02□□□□□ -0.33
PHRF1-201ENST00000264555 DYSFO75923 2080 aa13.01□□□□□ -0.33
PHRF1-201ENST00000264555 CDPF1Q6NVV7 123 aa13.01□□□□□ -0.33
PHRF1-201ENST00000264555 NUPR1O60356 82 aa13.01□□□□□ -0.33
PHRF1-201ENST00000264555 C16orf54Q6UWD8 224 aa13.01□□□□□ -0.33
PHRF1-201ENST00000264555 ZNF503Q96F45 646 aa13.01□□□□□ -0.33
PHRF1-201ENST00000264555 A0A087WX48 190 aa13.01□□□□□ -0.33
PHRF1-201ENST00000264555 HOXD3P31249 432 aaPredicted RBP13.01□□□□□ -0.33
PHRF1-201ENST00000264555 FAM208BQ5VWN6 2430 aa13□□□□□ -0.33
PHRF1-201ENST00000264555 MYMXA0A1B0GTQ4 84 aa13□□□□□ -0.33
PHRF1-201ENST00000264555 LINC00158P58513 81 aa13□□□□□ -0.33
PHRF1-201ENST00000264555 DEFB113Q30KQ7 82 aa13□□□□□ -0.33
PHRF1-201ENST00000264555 AJUBAQ96IF1 538 aa13□□□□□ -0.33
PHRF1-201ENST00000264555 MRPL35Q9NZE8 188 aaKnown RBP13□□□□□ -0.33
PHRF1-201ENST00000264555 FANCD2OSQ96PS1 177 aa13□□□□□ -0.33
PHRF1-201ENST00000264555 TRBV6-1A0A0K0K1D8 114 aa12.99□□□□□ -0.33
PHRF1-201ENST00000264555 GTSF1Q8WW33 167 aa12.99□□□□□ -0.33
PHRF1-201ENST00000264555 GNRH2O43555 120 aa12.99□□□□□ -0.33
PHRF1-201ENST00000264555 TMEM95Q3KNT9 176 aa12.99□□□□□ -0.33
PHRF1-201ENST00000264555 TMEM86BQ8N661 226 aa12.99□□□□□ -0.33
PHRF1-201ENST00000264555 TRAV13-1A0A0B4J241 112 aa12.99□□□□□ -0.33
PHRF1-201ENST00000264555 ODF3BA8MYP8 253 aa12.99□□□□□ -0.33
PHRF1-201ENST00000264555 HLA-DRB4P13762 266 aa12.99□□□□□ -0.33
PHRF1-201ENST00000264555 HLA-DRB4X5D2U9 266 aa12.99□□□□□ -0.33
PHRF1-201ENST00000264555 RIPPLY3P57055 190 aa12.99□□□□□ -0.33
PHRF1-201ENST00000264555 TRAV8-2A0A0B4J237 113 aa12.99□□□□□ -0.33
PHRF1-201ENST00000264555 F8VRH5 84 aa12.99□□□□□ -0.33
PHRF1-201ENST00000264555 CRPP02741 224 aa12.99□□□□□ -0.33
PHRF1-201ENST00000264555 K7EMI3 77 aa12.98□□□□□ -0.33
PHRF1-201ENST00000264555 ZNF493Q6ZR52 646 aa12.98□□□□□ -0.33
PHRF1-201ENST00000264555 DOPEY2Q9Y3R5 2298 aa12.98□□□□□ -0.33
PHRF1-201ENST00000264555 AZU1P20160 251 aa12.98□□□□□ -0.33
PHRF1-201ENST00000264555 PGPEP1Q9NXJ5 209 aa12.98□□□□□ -0.33
PHRF1-201ENST00000264555 KIR2DL5BA0A0G2JN68 375 aa12.98□□□□□ -0.33
PHRF1-201ENST00000264555 KIR2DL5BA0A0G2JPC4 375 aa12.98□□□□□ -0.33
PHRF1-201ENST00000264555 NEGR1Q7Z3B1 354 aa12.98□□□□□ -0.33
PHRF1-201ENST00000264555 KIR2DL5AQ8N109 375 aa12.98□□□□□ -0.33
PHRF1-201ENST00000264555 DEFB130BP0DP73 79 aa12.97□□□□□ -0.33
PHRF1-201ENST00000264555 DEFB130AP0DP74 79 aa12.97□□□□□ -0.33
PHRF1-201ENST00000264555 NPC2P61916 151 aa12.97□□□□□ -0.33
PHRF1-201ENST00000264555 DLX4Q92988 240 aaPredicted RBP12.97□□□□□ -0.33
PHRF1-201ENST00000264555 IGHV3-16A0A0C4DH30 117 aa12.96□□□□□ -0.33
PHRF1-201ENST00000264555 PRR14LQ5THK1 2151 aa12.96□□□□□ -0.33
PHRF1-201ENST00000264555 CKS1BP61024 79 aa12.96□□□□□ -0.33
PHRF1-201ENST00000264555 MAJINQ3KP22 176 aa12.96□□□□□ -0.33
PHRF1-201ENST00000264555 NOTCH3Q9UM47 2321 aa12.96□□□□□ -0.33
PHRF1-201ENST00000264555 DKK2Q9UBU2 259 aa12.96□□□□□ -0.34
PHRF1-201ENST00000264555 GAGE12BA1L429 117 aa12.95□□□□□ -0.34
PHRF1-201ENST00000264555 IGHG2P01859 326 aa12.95□□□□□ -0.34
PHRF1-201ENST00000264555 PLA2G5P39877 138 aa12.95□□□□□ -0.34
PHRF1-201ENST00000264555 SIGMAR1Q99720 223 aa12.95□□□□□ -0.34
PHRF1-201ENST00000264555 GAGE12JA6NER3 117 aa12.95□□□□□ -0.34
PHRF1-201ENST00000264555 PRAC2D3DTV9 90 aa12.95□□□□□ -0.34
PHRF1-201ENST00000264555 GAGE1Q13065 139 aa12.95□□□□□ -0.34
PHRF1-201ENST00000264555 GAGE4Q13068 117 aa12.95□□□□□ -0.34
PHRF1-201ENST00000264555 GAGE5Q13069 117 aa12.95□□□□□ -0.34
PHRF1-201ENST00000264555 LMO4P61968 165 aa12.94□□□□□ -0.34
PHRF1-201ENST00000264555 C9orf47Q6ZRZ4 202 aa12.94□□□□□ -0.34
PHRF1-201ENST00000264555 ARFGEF3Q5TH69 2177 aa12.94□□□□□ -0.34
PHRF1-201ENST00000264555 SIVA1O15304 175 aa12.94□□□□□ -0.34
PHRF1-201ENST00000264555 PRB1P04280 392 aa12.94□□□□□ -0.34
PHRF1-201ENST00000264555 ATXN8Q156A1 80 aa12.94□□□□□ -0.34
PHRF1-201ENST00000264555 C19orf71A6NCJ1 209 aa12.94□□□□□ -0.34
PHRF1-201ENST00000264555 PRIMA1Q86XR5 153 aa12.94□□□□□ -0.34
PHRF1-201ENST00000264555 PRORYQ9H606 182 aa12.94□□□□□ -0.34
PHRF1-201ENST00000264555 K7EMT4 169 aa12.93□□□□□ -0.34
PHRF1-201ENST00000264555 ACACBO00763 2458 aa12.93□□□□□ -0.34
PHRF1-201ENST00000264555 MSRB1Q9NZV6 116 aa12.93□□□□□ -0.34
PHRF1-201ENST00000264555 C6orf226Q5I0X4 101 aa12.93□□□□□ -0.34
PHRF1-201ENST00000264555 ZNRF2Q8NHG8 242 aa12.93□□□□□ -0.34
PHRF1-201ENST00000264555 C9orf118A6NHY6 69 aa12.93□□□□□ -0.34
PHRF1-201ENST00000264555 CRYGBP07316 175 aa12.93□□□□□ -0.34
PHRF1-201ENST00000264555 GATA1P15976 413 aaPredicted RBP12.93□□□□□ -0.34
PHRF1-201ENST00000264555 NRGNQ92686 78 aa12.93□□□□□ -0.34
PHRF1-201ENST00000264555 GHRHP01286 108 aa12.92□□□□□ -0.34
PHRF1-201ENST00000264555 FRMD6-AS1P0C7T7 363 aa12.92□□□□□ -0.34
PHRF1-201ENST00000264555 BVES-AS1Q5T3Y7 98 aa12.92□□□□□ -0.34
PHRF1-201ENST00000264555 TRBV25-1A0A075B6N4 114 aa12.92□□□□□ -0.34
PHRF1-201ENST00000264555 SPG11Q96JI7 2443 aa12.91□□□□□ -0.34
PHRF1-201ENST00000264555 DEFB136Q30KP8 78 aa12.91□□□□□ -0.34
PHRF1-201ENST00000264555 TSSC4Q9Y5U2 329 aaPredicted RBP12.91□□□□□ -0.34
PHRF1-201ENST00000264555 TMEM89A2RUT3 159 aa12.91□□□□□ -0.34
PHRF1-201ENST00000264555 IGLV2-8P01709 118 aa12.91□□□□□ -0.34
PHRF1-201ENST00000264555 SS18Q15532 418 aa12.91□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 1164.4 ms