RNA–Protein interactions for RNA: ENST00000550008.6

CUX1-214, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,350 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-214ENST00000550008 TRBV9A0A0B4J1U6 114 aa12.1□□□□□ -0.47
CUX1-214ENST00000550008 A0A1B0GWJ7 208 aa12.1□□□□□ -0.47
CUX1-214ENST00000550008 NDPQ00604 133 aa12.1□□□□□ -0.47
CUX1-214ENST00000550008 OTORQ9NRC9 128 aa12.1□□□□□ -0.47
CUX1-214ENST00000550008 TMEM242Q9NWH2 141 aa12.1□□□□□ -0.47
CUX1-214ENST00000550008 PMCHL1Q16048 86 aa12.1□□□□□ -0.47
CUX1-214ENST00000550008 SAPCD1Q5SSQ6 148 aa12.1□□□□□ -0.47
CUX1-214ENST00000550008 NDUFA4L2Q9NRX3 87 aa12.1□□□□□ -0.47
CUX1-214ENST00000550008 UQCR10Q9UDW1 63 aa12.1□□□□□ -0.47
CUX1-214ENST00000550008 SAA4P35542 130 aa12.09□□□□□ -0.47
CUX1-214ENST00000550008 ID1P41134 155 aa12.09□□□□□ -0.47
CUX1-214ENST00000550008 ZNF329Q86UD4 541 aa12.09□□□□□ -0.47
CUX1-214ENST00000550008 FMC1Q96HJ9 113 aa12.09□□□□□ -0.47
CUX1-214ENST00000550008 NRN1Q9NPD7 142 aa12.09□□□□□ -0.47
CUX1-214ENST00000550008 UQCRFS1P47985 274 aa12.09□□□□□ -0.47
CUX1-214ENST00000550008 PVRIGQ6DKI7 326 aa12.09□□□□□ -0.47
CUX1-214ENST00000550008 TEX36Q5VZQ5 186 aa12.09□□□□□ -0.47
CUX1-214ENST00000550008 LRP4O75096 1905 aa12.09□□□□□ -0.47
CUX1-214ENST00000550008 OR4C46A6NHA9 309 aa12.09□□□□□ -0.47
CUX1-214ENST00000550008 SHISA9B4DS77 424 aa12.09□□□□□ -0.47
CUX1-214ENST00000550008 APOHP02749 345 aaPredicted RBP12.09□□□□□ -0.47
CUX1-214ENST00000550008 EBLN2Q6P2I7 272 aa12.09□□□□□ -0.47
CUX1-214ENST00000550008 NAV3Q8IVL0 2385 aa12.08□□□□□ -0.47
CUX1-214ENST00000550008 TRANK1O15050 2925 aa12.08□□□□□ -0.48
CUX1-214ENST00000550008 TRBV20OR9-2A0A075B6H5 130 aa12.08□□□□□ -0.48
CUX1-214ENST00000550008 C9JCJ5 164 aa12.08□□□□□ -0.48
CUX1-214ENST00000550008 ITGB1BP1O14713 200 aa12.08□□□□□ -0.48
CUX1-214ENST00000550008 RUSC1-AS1Q66K80 236 aa12.08□□□□□ -0.48
CUX1-214ENST00000550008 C22orf46C9J442 243 aa12.08□□□□□ -0.48
CUX1-214ENST00000550008 H3BUX3 64 aa12.08□□□□□ -0.48
CUX1-214ENST00000550008 IGLV2-14P01704 120 aa12.08□□□□□ -0.48
CUX1-214ENST00000550008 LRRK2Q5S007 2527 aa12.08□□□□□ -0.48
CUX1-214ENST00000550008 EML5Q05BV3 1969 aa12.08□□□□□ -0.48
CUX1-214ENST00000550008 TANC2Q9HCD6 1990 aa12.08□□□□□ -0.48
CUX1-214ENST00000550008 PRTN3P24158 256 aa12.08□□□□□ -0.48
CUX1-214ENST00000550008 SSBP2P81877 361 aaPredicted RBP12.08□□□□□ -0.48
CUX1-214ENST00000550008 FBLN7Q53RD9 439 aa12.07□□□□□ -0.48
CUX1-214ENST00000550008 ZNF833PQ6ZTB9 187 aa12.07□□□□□ -0.48
CUX1-214ENST00000550008 MYOZ3Q8TDC0 251 aa12.07□□□□□ -0.48
CUX1-214ENST00000550008 CDC42EP3Q9UKI2 254 aa12.07□□□□□ -0.48
CUX1-214ENST00000550008 CIDEAO60543 219 aa12.07□□□□□ -0.48
CUX1-214ENST00000550008 TCRAP04437 139 aa12.07□□□□□ -0.48
CUX1-214ENST00000550008 Q5PR19 223 aa12.07□□□□□ -0.48
CUX1-214ENST00000550008 PRELID3AQ96N28 172 aa12.07□□□□□ -0.48
CUX1-214ENST00000550008 TRGV9Q99603 122 aa12.07□□□□□ -0.48
CUX1-214ENST00000550008 FNDC4Q9H6D8 234 aaPredicted RBP12.07□□□□□ -0.48
CUX1-214ENST00000550008 GGTLC3B5MD39 225 aa12.06□□□□□ -0.48
CUX1-214ENST00000550008 CFAP54Q96N23 3096 aa12.06□□□□□ -0.48
CUX1-214ENST00000550008 GAGE10A6NGK3 116 aa12.06□□□□□ -0.48
CUX1-214ENST00000550008 G3V318 75 aa12.06□□□□□ -0.48
CUX1-214ENST00000550008 PFN1P07737 140 aaKnown RBP12.06□□□□□ -0.48
CUX1-214ENST00000550008 C10orf91Q5T1B1 145 aa12.06□□□□□ -0.48
CUX1-214ENST00000550008 DGAT2L7PQ6IED9 249 aa12.06□□□□□ -0.48
CUX1-214ENST00000550008 FAM71F2Q6NXP2 309 aa12.06□□□□□ -0.48
CUX1-214ENST00000550008 SCGB1D4Q6XE38 83 aa12.06□□□□□ -0.48
CUX1-214ENST00000550008 OR10AG1Q8NH19 301 aa12.06□□□□□ -0.48
CUX1-214ENST00000550008 DEFB104AQ8WTQ1 72 aa12.06□□□□□ -0.48
CUX1-214ENST00000550008 LHBP01229 141 aa12.06□□□□□ -0.48
CUX1-214ENST00000550008 RAB9AP51151 201 aa12.06□□□□□ -0.48
CUX1-214ENST00000550008 MAP1LC3AQ9H492 121 aa12.06□□□□□ -0.48
CUX1-214ENST00000550008 NUTF2P61970 127 aaKnown RBP12.05□□□□□ -0.48
CUX1-214ENST00000550008 FOXL1Q12952 345 aa12.05□□□□□ -0.48
CUX1-214ENST00000550008 FER1L6-AS1Q8NA97 138 aa12.05□□□□□ -0.48
CUX1-214ENST00000550008 ZNF502Q8TBZ5 544 aa12.05□□□□□ -0.48
CUX1-214ENST00000550008 A0A1W2PRX2 142 aa12.05□□□□□ -0.48
CUX1-214ENST00000550008 JMJD1CQ15652 2540 aa12.05□□□□□ -0.48
CUX1-214ENST00000550008 ZNF138P52744 262 aa12.04□□□□□ -0.48
CUX1-214ENST00000550008 TMEM70Q9BUB7 260 aa12.04□□□□□ -0.48
CUX1-214ENST00000550008 CHD3Q12873 2000 aaKnown RBP12.04□□□□□ -0.48
CUX1-214ENST00000550008 TSKUQ8WUA8 353 aa12.04□□□□□ -0.48
CUX1-214ENST00000550008 A6NNC1 897 aa12.04□□□□□ -0.48
CUX1-214ENST00000550008 NPFFO15130 113 aa12.04□□□□□ -0.48
CUX1-214ENST00000550008 PROP1O75360 226 aa12.04□□□□□ -0.48
CUX1-214ENST00000550008 FXYD7P58549 80 aa12.04□□□□□ -0.48
CUX1-214ENST00000550008 TNRC6AQ8NDV7 1962 aaKnown RBP12.04□□□□□ -0.48
CUX1-214ENST00000550008 RITA1Q96K30 269 aa12.04□□□□□ -0.48
CUX1-214ENST00000550008 NUDT3O95989 172 aa12.04□□□□□ -0.48
CUX1-214ENST00000550008 C3orf36Q3SXR2 165 aa12.04□□□□□ -0.48
CUX1-214ENST00000550008 Q8NA96 180 aa12.04□□□□□ -0.48
CUX1-214ENST00000550008 TRAV41A0A0B4J266 112 aa12.03□□□□□ -0.48
CUX1-214ENST00000550008 C7orf71A4D174 169 aa12.03□□□□□ -0.48
CUX1-214ENST00000550008 JOSD1Q15040 202 aaPredicted RBP12.03□□□□□ -0.48
CUX1-214ENST00000550008 LCN12Q6JVE5 192 aa12.03□□□□□ -0.48
CUX1-214ENST00000550008 PET117Q6UWS5 81 aa12.03□□□□□ -0.48
CUX1-214ENST00000550008 ABCA12Q86UK0 2595 aa12.03□□□□□ -0.48
CUX1-214ENST00000550008 LYPD6BQ8NI32 183 aa12.03□□□□□ -0.48
CUX1-214ENST00000550008 NDUFB8O95169 186 aa12.03□□□□□ -0.48
CUX1-214ENST00000550008 RPS20P60866 119 aaKnown RBP12.03□□□□□ -0.48
CUX1-214ENST00000550008 TMEM97Q5BJF2 176 aa12.03□□□□□ -0.48
CUX1-214ENST00000550008 NUP35Q8NFH5 326 aa12.03□□□□□ -0.48
CUX1-214ENST00000550008 NACAE9PAV3 2078 aa12.02□□□□□ -0.48
CUX1-214ENST00000550008 FAM159AQ6UWV7 190 aa12.02□□□□□ -0.48
CUX1-214ENST00000550008 M0R1W7 72 aa12.02□□□□□ -0.49
CUX1-214ENST00000550008 ZNF324O75467 553 aaPredicted RBP12.02□□□□□ -0.49
CUX1-214ENST00000550008 RNASE4P34096 147 aaKnown RBP12.02□□□□□ -0.49
CUX1-214ENST00000550008 PLP1P60201 277 aa12.02□□□□□ -0.49
CUX1-214ENST00000550008 ERASQ7Z444 233 aa12.02□□□□□ -0.49
CUX1-214ENST00000550008 POLQO75417 2590 aa12.02□□□□□ -0.49
CUX1-214ENST00000550008 NCR2O95944 276 aa12.02□□□□□ -0.49
CUX1-214ENST00000550008 PAX8Q06710 450 aa12.02□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 125.6 ms