RNA–Protein interactions for RNA: YML029W

USA1, Transcript of Scaffold subunit of the Hrd1p ubiquitin ligase, yeast

Gene USA1, Length 2,517 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
USA1	YML029W	FAF1	P40546	346 aa	Predicted RBP	4.04	□□□□□ -1.76
USA1	YML029W	MNN11	P46985	422 aa	Known RBP	4.04	□□□□□ -1.76
USA1	YML029W	GYL1	Q04322	720 aa		4.04	□□□□□ -1.76
USA1	YML029W	SFI1	Q12369	946 aa		4.04	□□□□□ -1.76
USA1	YML029W	NOP14	Q99207	810 aa	Known RBP	4.04	□□□□□ -1.76
USA1	YML029W	SPE1	P08432	466 aa		4.04	□□□□□ -1.76
USA1	YML029W	CNS1	P33313	385 aa		4.04	□□□□□ -1.76
USA1	YML029W	YBL055C	P34220	418 aa	Predicted RBP	4.04	□□□□□ -1.76
USA1	YML029W	RRT2	P38332	387 aa		4.04	□□□□□ -1.76
USA1	YML029W	PCA1	P38360	1216 aa		4.04	□□□□□ -1.76
USA1	YML029W	HIS2	P38635	335 aa		4.04	□□□□□ -1.76
USA1	YML029W	PPX1	P38698	397 aa		4.04	□□□□□ -1.76
USA1	YML029W	QNS1	P38795	714 aa	Known RBP	4.04	□□□□□ -1.76
USA1	YML029W	STB4	P50104	949 aa		4.04	□□□□□ -1.76
USA1	YML029W	UTP8	P53276	713 aa	Known RBP	4.04	□□□□□ -1.76
USA1	YML029W	CDC55	Q00362	526 aa		4.04	□□□□□ -1.76
USA1	YML029W	MAP1	Q01662	387 aa	Known RBP RIP-Chip data	4.04	□□□□□ -1.76	not detected
USA1	YML029W	MTD1	Q02046	320 aa	Known RBP	4.04	□□□□□ -1.76
USA1	YML029W	YPR109W	Q06104	294 aa		4.04	□□□□□ -1.76
USA1	YML029W	BSP1	Q06604	576 aa		4.04	□□□□□ -1.76
USA1	YML029W	RCL1	Q08096	367 aa	Predicted RBP	4.04	□□□□□ -1.76
USA1	YML029W	LCB4	Q12246	624 aa		4.04	□□□□□ -1.76
USA1	YML029W	GPM3	Q12326	303 aa		4.04	□□□□□ -1.76
USA1	YML029W	NDJ1	Q12366	352 aa		4.04	□□□□□ -1.76
USA1	YML029W	YLR462W	O13556	202 aa		4.03	□□□□□ -1.76
USA1	YML029W	CIT2	P08679	460 aa		4.03	□□□□□ -1.76
USA1	YML029W	PYC1	P11154	1178 aa	Known RBP	4.03	□□□□□ -1.76
USA1	YML029W	VMA4	P22203	233 aa	Known RBP	4.03	□□□□□ -1.76
USA1	YML029W	PAT1	P25644	796 aa	Known RBP	4.03	□□□□□ -1.76
USA1	YML029W	GYP6	P32806	458 aa		4.03	□□□□□ -1.76
USA1	YML029W	SLX5	P32828	619 aa	Known RBP	4.03	□□□□□ -1.76
USA1	YML029W	SGE1	P33335	543 aa		4.03	□□□□□ -1.76
USA1	YML029W	SEG2	P34250	1132 aa		4.03	□□□□□ -1.76
USA1	YML029W	YHL049C	P38722	271 aa		4.03	□□□□□ -1.76
USA1	YML029W	LAM1	P38851	1228 aa		4.03	□□□□□ -1.76
USA1	YML029W	BOL3	P39724	118 aa		4.03	□□□□□ -1.76
USA1	YML029W	YEL075C	P39972	122 aa		4.03	□□□□□ -1.76
USA1	YML029W	LCP5	P40079	357 aa	Predicted RBP	4.03	□□□□□ -1.76
USA1	YML029W	YER189W	P40104	122 aa		4.03	□□□□□ -1.76
USA1	YML029W	ASG1	P40467	964 aa		4.03	□□□□□ -1.76
USA1	YML029W	YFL064C	P43540	174 aa		4.03	□□□□□ -1.76
USA1	YML029W	YJR079W	P47126	109 aa		4.03	□□□□□ -1.76
USA1	YML029W	NUP84	P52891	726 aa		4.03	□□□□□ -1.76
USA1	YML029W	RTS3	P53289	263 aa		4.03	□□□□□ -1.76
USA1	YML029W	VPS9	P54787	451 aa		4.03	□□□□□ -1.76
USA1	YML029W	HRD3	Q05787	833 aa		4.03	□□□□□ -1.76
USA1	YML029W	ECM38	Q05902	660 aa	Predicted RBP	4.03	□□□□□ -1.76
USA1	YML029W	AAD4	Q07747	329 aa		4.03	□□□□□ -1.76
USA1	YML029W	THI20	Q08224	551 aa		4.03	□□□□□ -1.76
USA1	YML029W	YBL111C	Q3E7Y5	667 aa		4.03	□□□□□ -1.76
USA1	YML029W	MPD2	Q99316	277 aa		4.03	□□□□□ -1.76
USA1	YML029W	NFU1	P32860	256 aa		4.03	□□□□□ -1.76
USA1	YML029W	TIF5	P38431	405 aa	Known RBP	4.03	□□□□□ -1.76
USA1	YML029W	CBR1	P38626	284 aa	Known RBP	4.03	□□□□□ -1.76
USA1	YML029W	YHL041W	P38730	149 aa		4.03	□□□□□ -1.76
USA1	YML029W	NEM1	P38757	446 aa		4.03	□□□□□ -1.76
USA1	YML029W	YHR131C	P38835	850 aa		4.03	□□□□□ -1.76
USA1	YML029W	CDC1	P40986	491 aa		4.03	□□□□□ -1.76
USA1	YML029W	RRN7	P40992	514 aa		4.03	□□□□□ -1.76
USA1	YML029W	MAF1	P41910	395 aa		4.03	□□□□□ -1.76
USA1	YML029W	GYP8	P43570	497 aa		4.03	□□□□□ -1.76
USA1	YML029W	BRO1	P48582	844 aa		4.03	□□□□□ -1.76
USA1	YML029W	MET14	Q02196	202 aa		4.03	□□□□□ -1.76
USA1	YML029W	ECI1	Q05871	280 aa		4.03	□□□□□ -1.76
USA1	YML029W	JIP5	Q06214	492 aa	Predicted RBP	4.03	□□□□□ -1.76
USA1	YML029W	YLR012C	Q07927	99 aa		4.03	□□□□□ -1.76
USA1	YML029W	THI21	Q08975	551 aa		4.03	□□□□□ -1.76
USA1	YML029W	SPO21	Q12411	609 aa		4.03	□□□□□ -1.76
USA1	YML029W	NOP58	Q12499	511 aa	Known RBP	4.03	□□□□□ -1.76
USA1	YML029W	NHA1	Q99271	985 aa		4.03	□□□□□ -1.76
USA1	YML029W	FRT1	Q99332	602 aa		4.03	□□□□□ -1.76
USA1	YML029W	TRX1	P22217	103 aa	Known RBP	4.02	□□□□□ -1.77
USA1	YML029W	GCG1	P32656	232 aa	Known RBP	4.02	□□□□□ -1.77
USA1	YML029W	RAD5	P32849	1169 aa	Predicted RBP	4.02	□□□□□ -1.77
USA1	YML029W	ECM2	P38241	364 aa	Known RBP	4.02	□□□□□ -1.77
USA1	YML029W	CCT4	P39078	528 aa	Known RBP	4.02	□□□□□ -1.77
USA1	YML029W	AVT2	P39981	480 aa		4.02	□□□□□ -1.77
USA1	YML029W	TMN3	P40071	706 aa		4.02	□□□□□ -1.77
USA1	YML029W	YIL054W	P40524	105 aa		4.02	□□□□□ -1.77
USA1	YML029W	YIR016W	P40572	265 aa		4.02	□□□□□ -1.77
USA1	YML029W	TCB2	P48231	1178 aa		4.02	□□□□□ -1.77
USA1	YML029W	RFX1	P48743	811 aa		4.02	□□□□□ -1.77
USA1	YML029W	PRP31	P49704	494 aa	Predicted RBP	4.02	□□□□□ -1.77
USA1	YML029W	YGR283C	P53336	341 aa	Predicted RBP	4.02	□□□□□ -1.77
USA1	YML029W	RRB1	Q04225	511 aa	Known RBP	4.02	□□□□□ -1.77
USA1	YML029W	VTI1	Q04338	217 aa		4.02	□□□□□ -1.77
USA1	YML029W	RTN1	Q04947	295 aa	Known RBP	4.02	□□□□□ -1.77
USA1	YML029W	YDR278C	Q05612	105 aa		4.02	□□□□□ -1.77
USA1	YML029W	TPO1	Q07824	586 aa		4.02	□□□□□ -1.77
USA1	YML029W	RMP1	Q12530	201 aa		4.02	□□□□□ -1.77
USA1	YML029W	TAO3	P40468	2376 aa		4.02	□□□□□ -1.77
USA1	YML029W	PEX34	P25584	144 aa		4.02	□□□□□ -1.77
USA1	YML029W	IMG2	P25642	146 aa	Predicted RBP	4.02	□□□□□ -1.77
USA1	YML029W	CAP1	P28495	268 aa	Known RBP	4.02	□□□□□ -1.77
USA1	YML029W	UBC6	P33296	250 aa	Predicted RBP	4.02	□□□□□ -1.77
USA1	YML029W	GCS1	P35197	352 aa		4.02	□□□□□ -1.77
USA1	YML029W	POL12	P38121	705 aa	Predicted RBP	4.02	□□□□□ -1.77
USA1	YML029W	KAP104	P38217	918 aa	Known RBP	4.02	□□□□□ -1.77
USA1	YML029W	YIL161W	P40449	235 aa	Known RBP	4.02	□□□□□ -1.77
USA1	YML029W	IML2	P47031	731 aa		4.02	□□□□□ -1.77

Retrieved 100 of 5,963 RNA–protein pairs in 11.1 ms