RNA–Protein interactions for RNA: YLR207W

HRD3, Transcript of ER membrane protein that plays a central role in ERAD, yeast

Gene HRD3, Length 2,502 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
HRD3	YLR207W	SDP1	P40479	209 aa		2.69	□□□□□ -1.98
HRD3	YLR207W	ATP22	P50273	684 aa	Predicted RBP	2.69	□□□□□ -1.98
HRD3	YLR207W	COX18	P53239	316 aa		2.69	□□□□□ -1.98
HRD3	YLR207W	GTF1	P53260	183 aa	Predicted RBP	2.69	□□□□□ -1.98
HRD3	YLR207W	CBK1	P53894	756 aa		2.69	□□□□□ -1.98
HRD3	YLR207W	ADE16	P54113	591 aa	Known RBP	2.69	□□□□□ -1.98
HRD3	YLR207W	SYF1	Q04048	859 aa	Predicted RBP	2.69	□□□□□ -1.98
HRD3	YLR207W	TDA9	Q04545	1251 aa		2.69	□□□□□ -1.98
HRD3	YLR207W	YLR407W	Q06070	228 aa		2.69	□□□□□ -1.98
HRD3	YLR207W	ISA1	Q07821	250 aa	Predicted RBP	2.69	□□□□□ -1.98
HRD3	YLR207W	NGL1	Q08213	363 aa	Known RBP	2.69	□□□□□ -1.98
HRD3	YLR207W	VHS3	Q08438	674 aa		2.69	□□□□□ -1.98
HRD3	YLR207W	SMC6	Q12749	1114 aa		2.69	□□□□□ -1.98
HRD3	YLR207W	CYC7	P00045	113 aa		2.69	□□□□□ -1.98
HRD3	YLR207W	CYB2	P00175	591 aa		2.69	□□□□□ -1.98
HRD3	YLR207W	GAL10	P04397	699 aa		2.69	□□□□□ -1.98
HRD3	YLR207W	SEC15	P22224	910 aa		2.69	□□□□□ -1.98
HRD3	YLR207W	MRPL36	P36531	177 aa		2.69	□□□□□ -1.98
HRD3	YLR207W	CTF8	P38877	133 aa		2.69	□□□□□ -1.98
HRD3	YLR207W	CIA1	Q05583	330 aa		2.69	□□□□□ -1.98
HRD3	YLR207W	YDL144C	Q07589	356 aa		2.69	□□□□□ -1.98
HRD3	YLR207W	YLR122C	Q12312	125 aa		2.69	□□□□□ -1.98
HRD3	YLR207W	SCM3	Q12334	223 aa		2.69	□□□□□ -1.98
HRD3	YLR207W	VPS5	Q92331	675 aa		2.69	□□□□□ -1.98
HRD3	YLR207W	YRF1-4	O13559	1382 aa		2.68	□□□□□ -1.98
HRD3	YLR207W	ATP12	P22135	325 aa		2.68	□□□□□ -1.98
HRD3	YLR207W	RAD16	P31244	790 aa		2.68	□□□□□ -1.98
HRD3	YLR207W	DBF4	P32325	704 aa		2.68	□□□□□ -1.98
HRD3	YLR207W	ANP1	P32629	500 aa		2.68	□□□□□ -1.98
HRD3	YLR207W	AKL1	P38080	1108 aa	Known RBP	2.68	□□□□□ -1.98
HRD3	YLR207W	BEM4	P39011	633 aa		2.68	□□□□□ -1.98
HRD3	YLR207W	SCS2	P40075	244 aa	Known RBP	2.68	□□□□□ -1.98
HRD3	YLR207W	MAD3	P47074	515 aa		2.68	□□□□□ -1.98
HRD3	YLR207W	PRP31	P49704	494 aa	Predicted RBP	2.68	□□□□□ -1.98
HRD3	YLR207W	SQS1	P53866	767 aa	Known RBP	2.68	□□□□□ -1.98
HRD3	YLR207W	YPL034W	Q03083	165 aa		2.68	□□□□□ -1.98
HRD3	YLR207W	PPN1	Q04119	674 aa		2.68	□□□□□ -1.98
HRD3	YLR207W	TPO1	Q07824	586 aa		2.68	□□□□□ -1.98
HRD3	YLR207W	HSP82	P02829	709 aa	Known RBP	2.68	□□□□□ -1.98
HRD3	YLR207W	MIS1	P09440	975 aa	Known RBP	2.68	□□□□□ -1.98
HRD3	YLR207W	DAL5	P15365	543 aa		2.68	□□□□□ -1.98
HRD3	YLR207W	CLB4	P24871	460 aa		2.68	□□□□□ -1.98
HRD3	YLR207W	TGL1	P34163	548 aa		2.68	□□□□□ -1.98
HRD3	YLR207W	EAF5	P39995	279 aa		2.68	□□□□□ -1.98
HRD3	YLR207W	KHA1	P40309	873 aa		2.68	□□□□□ -1.98
HRD3	YLR207W	PRP43	P53131	767 aa	Known RBP	2.68	□□□□□ -1.98
HRD3	YLR207W	BTN2	P53286	410 aa		2.68	□□□□□ -1.98
HRD3	YLR207W	BRE5	P53741	515 aa	Known RBP	2.68	□□□□□ -1.98
HRD3	YLR207W	ARP4	P80428	489 aa		2.68	□□□□□ -1.98
HRD3	YLR207W	FCP1	Q03254	732 aa		2.68	□□□□□ -1.98
HRD3	YLR207W	TAP42	Q04372	366 aa		2.68	□□□□□ -1.98
HRD3	YLR207W	YKU80	Q04437	629 aa		2.68	□□□□□ -1.98
HRD3	YLR207W	RIB2	Q12362	591 aa	Known RBP	2.68	□□□□□ -1.98
HRD3	YLR207W	PHO5	P00635	467 aa		2.67	□□□□□ -1.98
HRD3	YLR207W	SES1	P07284	462 aa	Known RBP	2.67	□□□□□ -1.98
HRD3	YLR207W	GCD1	P09032	578 aa	Predicted RBP	2.67	□□□□□ -1.98
HRD3	YLR207W	YEL076C-A	P0CX16	216 aa		2.67	□□□□□ -1.98
HRD3	YLR207W	YLR464W	P0CX17	216 aa		2.67	□□□□□ -1.98
HRD3	YLR207W	PYC1	P11154	1178 aa	Known RBP	2.67	□□□□□ -1.98
HRD3	YLR207W	SPO16	P17122	198 aa		2.67	□□□□□ -1.98
HRD3	YLR207W	IMG2	P25642	146 aa	Predicted RBP	2.67	□□□□□ -1.98
HRD3	YLR207W	HXT4	P32467	576 aa		2.67	□□□□□ -1.98
HRD3	YLR207W	DHR2	P36009	735 aa	Predicted RBP	2.67	□□□□□ -1.98
HRD3	YLR207W	YHR033W	P38690	423 aa		2.67	□□□□□ -1.98
HRD3	YLR207W	LAM1	P38851	1228 aa		2.67	□□□□□ -1.98
HRD3	YLR207W	CAJ1	P39101	391 aa		2.67	□□□□□ -1.98
HRD3	YLR207W	SSP120	P39931	234 aa	Known RBP	2.67	□□□□□ -1.98
HRD3	YLR207W	YEL076C	P39971	216 aa		2.67	□□□□□ -1.98
HRD3	YLR207W	PFA3	P42836	336 aa		2.67	□□□□□ -1.98
HRD3	YLR207W	YFL066C	P43538	392 aa		2.67	□□□□□ -1.98
HRD3	YLR207W	DSD1	P53095	428 aa		2.67	□□□□□ -1.98
HRD3	YLR207W	MDR1	P53258	950 aa		2.67	□□□□□ -1.98
HRD3	YLR207W	ZDS2	P54786	942 aa		2.67	□□□□□ -1.98
HRD3	YLR207W	MTD1	Q02046	320 aa	Known RBP	2.67	□□□□□ -1.98
HRD3	YLR207W	REC102	Q02721	264 aa		2.67	□□□□□ -1.98
HRD3	YLR207W	ALE1	Q08548	619 aa		2.67	□□□□□ -1.98
HRD3	YLR207W	SNF1	P06782	633 aa	Known RBP	2.67	□□□□□ -1.98
HRD3	YLR207W	ERG20	P08524	352 aa	Known RBP	2.67	□□□□□ -1.98
HRD3	YLR207W	PRP22	P24384	1145 aa	Known RBP	2.67	□□□□□ -1.98
HRD3	YLR207W	PRD1	P25375	712 aa		2.67	□□□□□ -1.98
HRD3	YLR207W	CCT3	P39077	534 aa	Known RBP	2.67	□□□□□ -1.98
HRD3	YLR207W	SPC72	P39723	622 aa		2.67	□□□□□ -1.98
HRD3	YLR207W	DPH1	P40487	425 aa	Known RBP	2.67	□□□□□ -1.98
HRD3	YLR207W	PXA1	P41909	870 aa		2.67	□□□□□ -1.98
HRD3	YLR207W	CIR1	P42940	261 aa		2.67	□□□□□ -1.98
HRD3	YLR207W	SNO2	P53823	222 aa		2.67	□□□□□ -1.98
HRD3	YLR207W	ROT1	Q03691	256 aa		2.67	□□□□□ -1.98
HRD3	YLR207W	MUS81	Q04149	632 aa	Predicted RBP	2.67	□□□□□ -1.98
HRD3	YLR207W	VBA4	Q04602	768 aa	Known RBP	2.67	□□□□□ -1.98
HRD3	YLR207W	VID22	Q05934	901 aa		2.67	□□□□□ -1.98
HRD3	YLR207W	IRC3	Q06683	689 aa		2.67	□□□□□ -1.98
HRD3	YLR207W	WHI4	Q07655	649 aa	Known RBP	2.67	□□□□□ -1.98
HRD3	YLR207W	BRE4	Q07660	1125 aa		2.67	□□□□□ -1.98
HRD3	YLR207W	RTT109	Q07794	436 aa		2.67	□□□□□ -1.98
HRD3	YLR207W	HOS1	Q12214	470 aa		2.67	□□□□□ -1.98
HRD3	YLR207W	RPS9B	P05755	195 aa	Known RBP	2.66	□□□□□ -1.98
HRD3	YLR207W	VAS1	P07806	1104 aa	Known RBP	2.66	□□□□□ -1.98
HRD3	YLR207W	FBP1	P09201	348 aa		2.66	□□□□□ -1.98
HRD3	YLR207W	CDC16	P09798	840 aa		2.66	□□□□□ -1.98
HRD3	YLR207W	ADH4	P10127	382 aa		2.66	□□□□□ -1.98

Retrieved 100 of 5,963 RNA–protein pairs in 19.4 ms