RNA–Protein interactions for RNA: YHR098C

SFB3, Transcript of Component of the Sec23p-Sfb3p heterodimer of the COPII vesicle coat, yeast

Gene SFB3, Length 2,790 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SFB3	YHR098C	HIR2	P32480	875 aa		5.85	□□□□□ -1.47
SFB3	YHR098C	MRX3	P38172	270 aa		5.85	□□□□□ -1.47
SFB3	YHR098C	GIP1	P38229	639 aa		5.85	□□□□□ -1.47
SFB3	YHR098C	MMS21	P38632	267 aa		5.85	□□□□□ -1.47
SFB3	YHR098C	GCV2	P49095	1034 aa		5.85	□□□□□ -1.47
SFB3	YHR098C	ORC3	P54790	616 aa		5.85	□□□□□ -1.47
SFB3	YHR098C	SRL4	Q03085	281 aa		5.85	□□□□□ -1.47
SFB3	YHR098C	BCP1	Q06338	283 aa		5.85	□□□□□ -1.47
SFB3	YHR098C	YDL114W	Q07530	308 aa		5.85	□□□□□ -1.47
SFB3	YHR098C	EMP46	Q12396	444 aa		5.85	□□□□□ -1.47
SFB3	YHR098C	PHO8	P11491	566 aa		5.84	□□□□□ -1.47
SFB3	YHR098C	EXO70	P19658	623 aa		5.84	□□□□□ -1.47
SFB3	YHR098C	AAD3	P25612	363 aa		5.84	□□□□□ -1.47
SFB3	YHR098C	MCM5	P29496	775 aa	Known RBP	5.84	□□□□□ -1.47
SFB3	YHR098C	HBS1	P32769	611 aa	Known RBP	5.84	□□□□□ -1.47
SFB3	YHR098C	UBP5	P39944	805 aa		5.84	□□□□□ -1.47
SFB3	YHR098C	SBE2	P42223	864 aa	Known RBP	5.84	□□□□□ -1.47
SFB3	YHR098C	YJL107C	P42947	387 aa		5.84	□□□□□ -1.47
SFB3	YHR098C	YGR153W	P48238	217 aa		5.84	□□□□□ -1.47
SFB3	YHR098C	SCY1	P53009	804 aa		5.84	□□□□□ -1.47
SFB3	YHR098C	SPC105	P53148	917 aa		5.84	□□□□□ -1.47
SFB3	YHR098C	ATG16	Q03818	150 aa		5.84	□□□□□ -1.47
SFB3	YHR098C	SND1	Q04007	877 aa		5.84	□□□□□ -1.47
SFB3	YHR098C	BUD22	Q04347	519 aa	Known RBP	5.84	□□□□□ -1.47
SFB3	YHR098C	COX20	Q04935	205 aa		5.84	□□□□□ -1.47
SFB3	YHR098C	YPR109W	Q06104	294 aa		5.84	□□□□□ -1.47
SFB3	YHR098C	DCS1	Q06151	350 aa		5.84	□□□□□ -1.47
SFB3	YHR098C	ATG29	Q12092	213 aa		5.84	□□□□□ -1.47
SFB3	YHR098C	YRR1	Q12172	810 aa		5.84	□□□□□ -1.47
SFB3	YHR098C	COR1	P07256	457 aa		5.84	□□□□□ -1.47
SFB3	YHR098C	SNT1	P25357	1226 aa		5.84	□□□□□ -1.47
SFB3	YHR098C	RAD14	P28519	371 aa		5.84	□□□□□ -1.47
SFB3	YHR098C	CUE2	P36075	443 aa	Known RBP	5.84	□□□□□ -1.47
SFB3	YHR098C	TSC10	P38342	320 aa		5.84	□□□□□ -1.47
SFB3	YHR098C	HAL5	P38970	855 aa	Known RBP	5.84	□□□□□ -1.47
SFB3	YHR098C	END3	P39013	349 aa		5.84	□□□□□ -1.47
SFB3	YHR098C	GDH3	P39708	457 aa		5.84	□□□□□ -1.47
SFB3	YHR098C	RSP5	P39940	809 aa	Known RBP	5.84	□□□□□ -1.47
SFB3	YHR098C	YTA12	P40341	825 aa		5.84	□□□□□ -1.47
SFB3	YHR098C	ALB1	P47019	175 aa	Predicted RBP	5.84	□□□□□ -1.47
SFB3	YHR098C	IRC8	P47046	822 aa		5.84	□□□□□ -1.47
SFB3	YHR098C	SAS4	Q04003	481 aa		5.84	□□□□□ -1.47
SFB3	YHR098C	YMR018W	Q04364	514 aa		5.84	□□□□□ -1.47
SFB3	YHR098C	ADY4	Q05955	493 aa		5.84	□□□□□ -1.47
SFB3	YHR098C	ASA1	Q06822	443 aa		5.84	□□□□□ -1.47
SFB3	YHR098C	CEX1	Q12453	761 aa		5.84	□□□□□ -1.47
SFB3	YHR098C	PET494	P07390	489 aa	Predicted RBP	5.84	□□□□□ -1.48
SFB3	YHR098C	HAP4	P14064	554 aa		5.84	□□□□□ -1.48
SFB3	YHR098C	PDC5	P16467	563 aa	Known RBP	5.84	□□□□□ -1.48
SFB3	YHR098C	VPS34	P22543	875 aa		5.84	□□□□□ -1.48
SFB3	YHR098C	GBP2	P25555	427 aa	Known RBP RIP-Chip data	5.84	□□□□□ -1.48	not detected
SFB3	YHR098C	PAT1	P25644	796 aa	Known RBP	5.84	□□□□□ -1.48
SFB3	YHR098C	PEX2	P32800	271 aa		5.84	□□□□□ -1.48
SFB3	YHR098C	TFC4	P33339	1025 aa		5.84	□□□□□ -1.48
SFB3	YHR098C	ALA1	P40825	983 aa	Known RBP	5.84	□□□□□ -1.48
SFB3	YHR098C	PFD1	P46988	109 aa		5.84	□□□□□ -1.48
SFB3	YHR098C	RMR1	P53060	241 aa		5.84	□□□□□ -1.48
SFB3	YHR098C	SED5	Q01590	340 aa		5.84	□□□□□ -1.48
SFB3	YHR098C	MEH1	Q02205	184 aa		5.84	□□□□□ -1.48
SFB3	YHR098C	MTG1	Q03151	367 aa	Predicted RBP	5.84	□□□□□ -1.48
SFB3	YHR098C	ABZ2	Q03266	374 aa		5.84	□□□□□ -1.48
SFB3	YHR098C	YEH2	Q07950	538 aa		5.84	□□□□□ -1.48
SFB3	YHR098C	SNX3	Q08826	162 aa	Known RBP	5.84	□□□□□ -1.48
SFB3	YHR098C	GRE2	Q12068	342 aa	Known RBP	5.84	□□□□□ -1.48
SFB3	YHR098C	APA1	P16550	321 aa	Known RBP	5.83	□□□□□ -1.48
SFB3	YHR098C	SRM1	P21827	482 aa		5.83	□□□□□ -1.48
SFB3	YHR098C	BUD31	P25337	157 aa	Predicted RBP	5.83	□□□□□ -1.48
SFB3	YHR098C	GFD2	P25370	566 aa	Known RBP	5.83	□□□□□ -1.48
SFB3	YHR098C	SBA1	P28707	216 aa	Known RBP	5.83	□□□□□ -1.48
SFB3	YHR098C	EUG1	P32474	517 aa		5.83	□□□□□ -1.48
SFB3	YHR098C	TFB1	P32776	642 aa		5.83	□□□□□ -1.48
SFB3	YHR098C	RRT2	P38332	387 aa		5.83	□□□□□ -1.48
SFB3	YHR098C	HIS2	P38635	335 aa		5.83	□□□□□ -1.48
SFB3	YHR098C	STT3	P39007	718 aa	Known RBP	5.83	□□□□□ -1.48
SFB3	YHR098C	STL1	P39932	569 aa		5.83	□□□□□ -1.48
SFB3	YHR098C	GCD10	P41814	478 aa		5.83	□□□□□ -1.48
SFB3	YHR098C	EMC2	P47133	292 aa	Known RBP	5.83	□□□□□ -1.48
SFB3	YHR098C	DAK1	P54838	584 aa	Known RBP	5.83	□□□□□ -1.48
SFB3	YHR098C	ULP1	Q02724	621 aa		5.83	□□□□□ -1.48
SFB3	YHR098C	SKI8	Q02793	397 aa	Predicted RBP	5.83	□□□□□ -1.48
SFB3	YHR098C	NTG2	Q08214	380 aa		5.83	□□□□□ -1.48
SFB3	YHR098C	DBP5	P20449	482 aa	Known RBP	5.83	□□□□□ -1.48
SFB3	YHR098C	RNR3	P21672	869 aa	Known RBP	5.83	□□□□□ -1.48
SFB3	YHR098C	RPB10	P22139	70 aa		5.83	□□□□□ -1.48
SFB3	YHR098C	KIP2	P28743	706 aa		5.83	□□□□□ -1.48
SFB3	YHR098C	YSC84	P32793	468 aa		5.83	□□□□□ -1.48
SFB3	YHR098C	SIP2	P34164	415 aa	Known RBP	5.83	□□□□□ -1.48
SFB3	YHR098C	BLI1	P35727	113 aa		5.83	□□□□□ -1.48
SFB3	YHR098C	MAE1	P36013	669 aa	Known RBP	5.83	□□□□□ -1.48
SFB3	YHR098C	YBR139W	P38109	508 aa		5.83	□□□□□ -1.48
SFB3	YHR098C	GCD14	P46959	383 aa	Predicted RBP	5.83	□□□□□ -1.48
SFB3	YHR098C	PSP1	P50896	841 aa	Known RBP	5.83	□□□□□ -1.48
SFB3	YHR098C	YGL138C	P53122	345 aa		5.83	□□□□□ -1.48
SFB3	YHR098C	UTP8	P53276	713 aa	Known RBP	5.83	□□□□□ -1.48
SFB3	YHR098C	SPO20	Q04359	397 aa		5.83	□□□□□ -1.48
SFB3	YHR098C	CDA1	Q06702	301 aa		5.83	□□□□□ -1.48
SFB3	YHR098C	WRS1	Q12109	432 aa	Known RBP	5.83	□□□□□ -1.48
SFB3	YHR098C	RPN13	O13563	156 aa		5.82	□□□□□ -1.48
SFB3	YHR098C	GCR1	P07261	785 aa		5.82	□□□□□ -1.48
SFB3	YHR098C	TRM1	P15565	570 aa	Known RBP	5.82	□□□□□ -1.48

Retrieved 100 of 5,963 RNA–protein pairs in 87.7 ms