RNA–Protein interactions for RNA: ENST00000262554.6

SPTLC1-201, Transcript of serine palmitoyltransferase long chain base subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SPTLC1, Length 1,894 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1-201ENST00000262554 OR1P1Q8NH06 330 aa10.36□□□□□ -0.75
SPTLC1-201ENST00000262554 TMEM37Q8WXS4 190 aa10.36□□□□□ -0.75
SPTLC1-201ENST00000262554 C11orf52Q96A22 123 aa10.36□□□□□ -0.75
SPTLC1-201ENST00000262554 SLC25A33Q9BSK2 321 aa10.36□□□□□ -0.75
SPTLC1-201ENST00000262554 HIVEP3Q5T1R4 2406 aa10.35□□□□□ -0.75
SPTLC1-201ENST00000262554 LRBAP50851 2863 aa10.35□□□□□ -0.75
SPTLC1-201ENST00000262554 PSMB11A5LHX3 300 aa10.35□□□□□ -0.75
SPTLC1-201ENST00000262554 A6NNC1 897 aa10.35□□□□□ -0.75
SPTLC1-201ENST00000262554 COX7A2P2O60397 106 aa10.35□□□□□ -0.75
SPTLC1-201ENST00000262554 IGHV3-48P01763 117 aa10.35□□□□□ -0.75
SPTLC1-201ENST00000262554 CRYGCP07315 174 aa10.35□□□□□ -0.75
SPTLC1-201ENST00000262554 BPIFB3P59826 476 aa10.35□□□□□ -0.75
SPTLC1-201ENST00000262554 KIR3DL3Q8N743 410 aa10.35□□□□□ -0.75
SPTLC1-201ENST00000262554 HILPDAQ9Y5L2 63 aa10.35□□□□□ -0.75
SPTLC1-201ENST00000262554 NAV3Q8IVL0 2385 aa10.35□□□□□ -0.75
SPTLC1-201ENST00000262554 PLXNB1O43157 2135 aa10.35□□□□□ -0.75
SPTLC1-201ENST00000262554 IGKV1D-37A0A075B6S9 117 aa10.34□□□□□ -0.75
SPTLC1-201ENST00000262554 ODF3BA8MYP8 253 aa10.34□□□□□ -0.75
SPTLC1-201ENST00000262554 TEX22C9J3V5 150 aa10.34□□□□□ -0.75
SPTLC1-201ENST00000262554 PPP1R2P9O14990 202 aa10.34□□□□□ -0.75
SPTLC1-201ENST00000262554 TRGC2P03986 189 aa10.34□□□□□ -0.75
SPTLC1-201ENST00000262554 APELAP0DMC3 54 aa10.34□□□□□ -0.75
SPTLC1-201ENST00000262554 SRP14P37108 136 aaKnown RBP10.34□□□□□ -0.75
SPTLC1-201ENST00000262554 EFNA4P52798 201 aa10.34□□□□□ -0.75
SPTLC1-201ENST00000262554 ZNF90Q03938 601 aa10.34□□□□□ -0.75
SPTLC1-201ENST00000262554 KLRD1Q13241 179 aa10.34□□□□□ -0.75
SPTLC1-201ENST00000262554 LDLRAD2Q5SZI1 272 aa10.34□□□□□ -0.75
SPTLC1-201ENST00000262554 C10orf113Q5VZT2 155 aa10.34□□□□□ -0.75
SPTLC1-201ENST00000262554 SRSF12Q8WXF0 261 aaKnown RBP10.34□□□□□ -0.75
SPTLC1-201ENST00000262554 ZNF503Q96F45 646 aa10.34□□□□□ -0.75
SPTLC1-201ENST00000262554 F11RQ9Y624 299 aaKnown RBP10.34□□□□□ -0.75
SPTLC1-201ENST00000262554 ARHGAP32A7KAX9 2087 aa10.34□□□□□ -0.75
SPTLC1-201ENST00000262554 CHD8Q9HCK8 2581 aa10.34□□□□□ -0.75
SPTLC1-201ENST00000262554 MFAP2P55001 183 aa10.34□□□□□ -0.75
SPTLC1-201ENST00000262554 PAX2Q02962 417 aa10.34□□□□□ -0.75
SPTLC1-201ENST00000262554 MMDQ15546 238 aa10.34□□□□□ -0.75
SPTLC1-201ENST00000262554 KCNIP4Q6PIL6 250 aa10.34□□□□□ -0.75
SPTLC1-201ENST00000262554 OR4X1Q8NH49 305 aa10.34□□□□□ -0.75
SPTLC1-201ENST00000262554 SRSF8Q9BRL6 282 aaKnown RBP10.34□□□□□ -0.75
SPTLC1-201ENST00000262554 PYGO2Q9BRQ0 406 aa10.34□□□□□ -0.75
SPTLC1-201ENST00000262554 TNFRSF19Q9NS68 423 aa10.34□□□□□ -0.75
SPTLC1-201ENST00000262554 MRPL36Q9P0J6 103 aaKnown RBP10.34□□□□□ -0.75
SPTLC1-201ENST00000262554 NCOR2Q9Y618 2525 aa10.34□□□□□ -0.75
SPTLC1-201ENST00000262554 HRNRQ86YZ3 2850 aaPredicted RBP10.33□□□□□ -0.76
SPTLC1-201ENST00000262554 TRBV20OR9-2A0A075B6H5 130 aa10.33□□□□□ -0.76
SPTLC1-201ENST00000262554 MDFIC2A0A1B0GVS7 189 aa10.33□□□□□ -0.76
SPTLC1-201ENST00000262554 NBR2O15453 112 aa10.33□□□□□ -0.76
SPTLC1-201ENST00000262554 NDUFS7O75251 213 aa10.33□□□□□ -0.76
SPTLC1-201ENST00000262554 CNIH1O95406 144 aa10.33□□□□□ -0.76
SPTLC1-201ENST00000262554 MOSP00540 346 aa10.33□□□□□ -0.76
SPTLC1-201ENST00000262554 OR10J4P0C629 311 aa10.33□□□□□ -0.76
SPTLC1-201ENST00000262554 VMO1Q7Z5L0 202 aa10.33□□□□□ -0.76
SPTLC1-201ENST00000262554 LHFPL4Q7Z7J7 247 aa10.33□□□□□ -0.76
SPTLC1-201ENST00000262554 TMEM116Q8NCL8 245 aa10.33□□□□□ -0.76
SPTLC1-201ENST00000262554 CFHR4Q92496 578 aa10.33□□□□□ -0.76
SPTLC1-201ENST00000262554 TRGV9Q99603 122 aa10.33□□□□□ -0.76
SPTLC1-201ENST00000262554 SLC25A2Q9BXI2 301 aa10.33□□□□□ -0.76
SPTLC1-201ENST00000262554 AURKAIP1Q9NWT8 199 aaPredicted RBP10.33□□□□□ -0.76
SPTLC1-201ENST00000262554 PGPEP1Q9NXJ5 209 aa10.33□□□□□ -0.76
SPTLC1-201ENST00000262554 ELOA3CA0A087WX78 387 aaPredicted RBP10.32□□□□□ -0.76
SPTLC1-201ENST00000262554 A0A1W2PRE2 83 aa10.32□□□□□ -0.76
SPTLC1-201ENST00000262554 PGPEP1LA6NFU8 196 aa10.32□□□□□ -0.76
SPTLC1-201ENST00000262554 C19orf84I3L1E1 186 aa10.32□□□□□ -0.76
SPTLC1-201ENST00000262554 FCN1O00602 326 aa10.32□□□□□ -0.76
SPTLC1-201ENST00000262554 S100A8P05109 93 aa10.32□□□□□ -0.76
SPTLC1-201ENST00000262554 CCDC144NLQ6NUI1 221 aa10.32□□□□□ -0.76
SPTLC1-201ENST00000262554 OR5AU1Q8NGC0 362 aa10.32□□□□□ -0.76
SPTLC1-201ENST00000262554 SFRP2Q96HF1 295 aa10.32□□□□□ -0.76
SPTLC1-201ENST00000262554 FAM167A-AS1Q96KT0 104 aa10.32□□□□□ -0.76
SPTLC1-201ENST00000262554 ELOVL1Q9BW60 279 aa10.32□□□□□ -0.76
SPTLC1-201ENST00000262554 SRD5A3Q9H8P0 318 aa10.32□□□□□ -0.76
SPTLC1-201ENST00000262554 ZNF355PQ9NSJ1 428 aa10.32□□□□□ -0.76
SPTLC1-201ENST00000262554 LY96Q9Y6Y9 160 aa10.32□□□□□ -0.76
SPTLC1-201ENST00000262554 C9JCJ5 164 aa10.32□□□□□ -0.76
SPTLC1-201ENST00000262554 PPP5D1E7EU14 171 aa10.32□□□□□ -0.76
SPTLC1-201ENST00000262554 HIST1H2BKO60814 126 aa10.32□□□□□ -0.76
SPTLC1-201ENST00000262554 HIST1H2BJP06899 126 aa10.32□□□□□ -0.76
SPTLC1-201ENST00000262554 HIST1H2BOP23527 126 aa10.32□□□□□ -0.76
SPTLC1-201ENST00000262554 HIST1H2BBP33778 126 aa10.32□□□□□ -0.76
SPTLC1-201ENST00000262554 NDUFA6P56556 154 aa10.32□□□□□ -0.76
SPTLC1-201ENST00000262554 HIST1H2BDP58876 126 aa10.32□□□□□ -0.76
SPTLC1-201ENST00000262554 HIST1H2BCP62807 126 aa10.32□□□□□ -0.76
SPTLC1-201ENST00000262554 UBE2L3P68036 154 aaKnown RBP10.32□□□□□ -0.76
SPTLC1-201ENST00000262554 HIST2H2BEQ16778 126 aa10.32□□□□□ -0.76
SPTLC1-201ENST00000262554 HIST2H2BFQ5QNW6 126 aaPredicted RBP10.32□□□□□ -0.76
SPTLC1-201ENST00000262554 PATE2Q6UY27 113 aa10.32□□□□□ -0.76
SPTLC1-201ENST00000262554 NPBQ8NG41 125 aa10.32□□□□□ -0.76
SPTLC1-201ENST00000262554 OR2T10Q8NGZ9 312 aa10.32□□□□□ -0.76
SPTLC1-201ENST00000262554 OCC1Q8TAD7 63 aa10.32□□□□□ -0.76
SPTLC1-201ENST00000262554 HIST1H2BHQ93079 126 aa10.32□□□□□ -0.76
SPTLC1-201ENST00000262554 HIST1H2BNQ99877 126 aa10.32□□□□□ -0.76
SPTLC1-201ENST00000262554 HIST1H2BMQ99879 126 aa10.32□□□□□ -0.76
SPTLC1-201ENST00000262554 RELNP78509 3460 aa10.31□□□□□ -0.76
SPTLC1-201ENST00000262554 SPTBN1Q01082 2364 aaKnown RBP10.31□□□□□ -0.76
SPTLC1-201ENST00000262554 TRAV5A0A0B4J249 113 aa10.31□□□□□ -0.76
SPTLC1-201ENST00000262554 A0A1W2PPQ1 181 aa10.31□□□□□ -0.76
SPTLC1-201ENST00000262554 A0A1W2PRD5 423 aa10.31□□□□□ -0.76
SPTLC1-201ENST00000262554 A0A1W2PRF3 423 aa10.31□□□□□ -0.76
SPTLC1-201ENST00000262554 A0A1W2PRM7 423 aa10.31□□□□□ -0.76
SPTLC1-201ENST00000262554 OOSP1A8MZH6 123 aa10.31□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 127.9 ms