RNA–Protein interactions for RNA: ENST00000396595.7

LIMCH1-203, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-203ENST00000396595 OR4X2Q8NGF9 303 aa8.75□□□□□ -1.01
LIMCH1-203ENST00000396595 RCC1LQ96I51 464 aaKnown RBP8.75□□□□□ -1.01
LIMCH1-203ENST00000396595 TMEM56-RWDD3S4R434 201 aa8.75□□□□□ -1.01
LIMCH1-203ENST00000396595 IGHV3-72A0A0B4J1Y9 119 aa8.75□□□□□ -1.01
LIMCH1-203ENST00000396595 IGHV4-39P01824 125 aa8.75□□□□□ -1.01
LIMCH1-203ENST00000396595 KIAA1644Q3SXP7 199 aa8.75□□□□□ -1.01
LIMCH1-203ENST00000396595 LAMTOR1Q6IAA8 161 aa8.75□□□□□ -1.01
LIMCH1-203ENST00000396595 SYT8Q8NBV8 401 aa8.75□□□□□ -1.01
LIMCH1-203ENST00000396595 SRSF12Q8WXF0 261 aaKnown RBP8.75□□□□□ -1.01
LIMCH1-203ENST00000396595 C16orf92Q96LL3 132 aa8.75□□□□□ -1.01
LIMCH1-203ENST00000396595 TMEM160Q9NX00 188 aa8.75□□□□□ -1.01
LIMCH1-203ENST00000396595 HS3ST3B1Q9Y662 390 aa8.75□□□□□ -1.01
LIMCH1-203ENST00000396595 TRAV5A0A0B4J249 113 aa8.75□□□□□ -1.01
LIMCH1-203ENST00000396595 PSG9Q00887 426 aa8.75□□□□□ -1.01
LIMCH1-203ENST00000396595 ZNF146Q15072 292 aa8.75□□□□□ -1.01
LIMCH1-203ENST00000396595 ASPHD2Q6ICH7 369 aa8.75□□□□□ -1.01
LIMCH1-203ENST00000396595 GEMIN7Q9H840 131 aaKnown RBP8.75□□□□□ -1.01
LIMCH1-203ENST00000396595 SHISA5Q8N114 240 aa8.74□□□□□ -1.01
LIMCH1-203ENST00000396595 CACNA1IQ9P0X4 2223 aa8.74□□□□□ -1.01
LIMCH1-203ENST00000396595 TRIP12Q14669 1992 aaPredicted RBP8.74□□□□□ -1.01
LIMCH1-203ENST00000396595 MSGN1A6NI15 193 aa8.74□□□□□ -1.01
LIMCH1-203ENST00000396595 EBLN2Q6P2I7 272 aa8.74□□□□□ -1.01
LIMCH1-203ENST00000396595 TMEM54Q969K7 222 aa8.74□□□□□ -1.01
LIMCH1-203ENST00000396595 SCARF2Q96GP6 870 aaPredicted RBP8.74□□□□□ -1.01
LIMCH1-203ENST00000396595 TM2D1Q9BX74 207 aa8.74□□□□□ -1.01
LIMCH1-203ENST00000396595 ADAMTSL1Q8N6G6 1762 aa8.74□□□□□ -1.01
LIMCH1-203ENST00000396595 C17orf51A8MQB3 221 aa8.74□□□□□ -1.01
LIMCH1-203ENST00000396595 SS18L1O75177 396 aaPredicted RBP8.74□□□□□ -1.01
LIMCH1-203ENST00000396595 IGKV3-11P04433 115 aa8.74□□□□□ -1.01
LIMCH1-203ENST00000396595 FAM106CPP0CH98 169 aa8.74□□□□□ -1.01
LIMCH1-203ENST00000396595 CYP2G1PQ6ZSU1 146 aa8.74□□□□□ -1.01
LIMCH1-203ENST00000396595 COL24A1Q17RW2 1714 aa8.74□□□□□ -1.01
LIMCH1-203ENST00000396595 ZNFX1Q9P2E3 1918 aaKnown RBP8.74□□□□□ -1.01
LIMCH1-203ENST00000396595 KBTBD11-OT1A0A1B0GTJ5 212 aa8.74□□□□□ -1.01
LIMCH1-203ENST00000396595 ADRA2AP08913 450 aa8.74□□□□□ -1.01
LIMCH1-203ENST00000396595 ANOS1P23352 680 aa8.74□□□□□ -1.01
LIMCH1-203ENST00000396595 TMEM155Q4W5P6 130 aa8.74□□□□□ -1.01
LIMCH1-203ENST00000396595 CFHR5Q9BXR6 569 aa8.74□□□□□ -1.01
LIMCH1-203ENST00000396595 PRDM13Q9H4Q3 707 aa8.74□□□□□ -1.01
LIMCH1-203ENST00000396595 UBE2CO00762 179 aa8.73□□□□□ -1.01
LIMCH1-203ENST00000396595 THY1P04216 161 aa8.73□□□□□ -1.01
LIMCH1-203ENST00000396595 SRSF6Q13247 344 aaKnown RBP8.73□□□□□ -1.01
LIMCH1-203ENST00000396595 ORAOV1Q8WV07 137 aa8.73□□□□□ -1.01
LIMCH1-203ENST00000396595 NHP2Q9NX24 153 aaKnown RBP8.73□□□□□ -1.01
LIMCH1-203ENST00000396595 CENPWQ5EE01 88 aa8.73□□□□□ -1.01
LIMCH1-203ENST00000396595 SAMD5Q5TGI4 173 aa8.73□□□□□ -1.01
LIMCH1-203ENST00000396595 FAM53AQ6NSI3 398 aaPredicted RBP8.73□□□□□ -1.01
LIMCH1-203ENST00000396595 ABHD12Q8N2K0 398 aa8.73□□□□□ -1.01
LIMCH1-203ENST00000396595 TMEM171Q8WVE6 324 aa8.73□□□□□ -1.01
LIMCH1-203ENST00000396595 C2orf88Q9BSF0 95 aa8.73□□□□□ -1.01
LIMCH1-203ENST00000396595 TNFRSF6BO95407 300 aa8.73□□□□□ -1.01
LIMCH1-203ENST00000396595 ACSF3Q4G176 576 aaPredicted RBP8.73□□□□□ -1.01
LIMCH1-203ENST00000396595 KLF14Q8TD94 323 aaPredicted RBP8.73□□□□□ -1.01
LIMCH1-203ENST00000396595 SRP19P09132 144 aaKnown RBP8.73□□□□□ -1.01
LIMCH1-203ENST00000396595 UCP1P25874 307 aa8.73□□□□□ -1.01
LIMCH1-203ENST00000396595 RAB9AP51151 201 aa8.73□□□□□ -1.01
LIMCH1-203ENST00000396595 SLC25A53Q5H9E4 307 aa8.73□□□□□ -1.01
LIMCH1-203ENST00000396595 CEP290O15078 2479 aa8.73□□□□□ -1.01
LIMCH1-203ENST00000396595 CRYBA2P53672 197 aa8.73□□□□□ -1.01
LIMCH1-203ENST00000396595 OCIAD2Q56VL3 154 aa8.73□□□□□ -1.01
LIMCH1-203ENST00000396595 DNM1P46Q6ZS02 220 aa8.73□□□□□ -1.01
LIMCH1-203ENST00000396595 BOD1L2Q8IYS8 172 aa8.73□□□□□ -1.01
LIMCH1-203ENST00000396595 C1orf43Q9BWL3 253 aa8.73□□□□□ -1.01
LIMCH1-203ENST00000396595 ALPK2Q86TB3 2170 aa8.72□□□□□ -1.01
LIMCH1-203ENST00000396595 A0A087WWC5 75 aa8.72□□□□□ -1.01
LIMCH1-203ENST00000396595 CBLN1P23435 193 aa8.72□□□□□ -1.01
LIMCH1-203ENST00000396595 SEC11AP67812 179 aa8.72□□□□□ -1.01
LIMCH1-203ENST00000396595 HBBP68871 147 aa8.72□□□□□ -1.01
LIMCH1-203ENST00000396595 CX3CL1P78423 397 aa8.72□□□□□ -1.01
LIMCH1-203ENST00000396595 TGIF1Q15583 401 aa8.72□□□□□ -1.01
LIMCH1-203ENST00000396595 OR9G1Q8NH87 305 aa8.72□□□□□ -1.01
LIMCH1-203ENST00000396595 SRXN1Q9BYN0 137 aa8.72□□□□□ -1.01
LIMCH1-203ENST00000396595 PLSCR2Q9NRY7 297 aa8.72□□□□□ -1.01
LIMCH1-203ENST00000396595 TUBGCP6Q96RT7 1819 aa8.72□□□□□ -1.01
LIMCH1-203ENST00000396595 SPAARA0A1B0GVQ0 90 aa8.72□□□□□ -1.01
LIMCH1-203ENST00000396595 RNF222A6NCQ9 220 aa8.72□□□□□ -1.01
LIMCH1-203ENST00000396595 UBE2L6O14933 153 aa8.72□□□□□ -1.01
LIMCH1-203ENST00000396595 PAX2Q02962 417 aa8.72□□□□□ -1.01
LIMCH1-203ENST00000396595 SLC25A45Q8N413 288 aa8.72□□□□□ -1.01
LIMCH1-203ENST00000396595 WDYHV1Q96HA8 205 aa8.72□□□□□ -1.01
LIMCH1-203ENST00000396595 ZNF831Q5JPB2 1677 aa8.72□□□□□ -1.01
LIMCH1-203ENST00000396595 PTPRFP10586 1907 aa8.72□□□□□ -1.01
LIMCH1-203ENST00000396595 TRAV8-1A0A0A6YYK1 113 aa8.72□□□□□ -1.01
LIMCH1-203ENST00000396595 RRHO14718 337 aa8.72□□□□□ -1.01
LIMCH1-203ENST00000396595 UBE2V1Q13404 147 aa8.72□□□□□ -1.01
LIMCH1-203ENST00000396595 FADS6Q8N9I5 356 aa8.72□□□□□ -1.01
LIMCH1-203ENST00000396595 WNT9BO14905 357 aa8.72□□□□□ -1.01
LIMCH1-203ENST00000396595 OR5P3Q8WZ94 311 aa8.72□□□□□ -1.01
LIMCH1-203ENST00000396595 PHLDA3Q9Y5J5 127 aa8.72□□□□□ -1.01
LIMCH1-203ENST00000396595 SCN4AP35499 1836 aa8.71□□□□□ -1.01
LIMCH1-203ENST00000396595 CCL21O00585 134 aa8.71□□□□□ -1.01
LIMCH1-203ENST00000396595 COX6A1P12074 109 aa8.71□□□□□ -1.01
LIMCH1-203ENST00000396595 DLX6P56179 175 aa8.71□□□□□ -1.01
LIMCH1-203ENST00000396595 PCOLCEQ15113 449 aa8.71□□□□□ -1.01
LIMCH1-203ENST00000396595 UNQ5815/PRO19632Q6UWF5 114 aa8.71□□□□□ -1.01
LIMCH1-203ENST00000396595 SPSB2Q99619 263 aa8.71□□□□□ -1.01
LIMCH1-203ENST00000396595 ZNHIT1O43257 154 aa8.71□□□□□ -1.01
LIMCH1-203ENST00000396595 HOXA3O43365 443 aaPredicted RBP8.71□□□□□ -1.01
LIMCH1-203ENST00000396595 PRTN3P24158 256 aa8.71□□□□□ -1.01
LIMCH1-203ENST00000396595 GFRA1P56159 465 aa8.71□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 67.3 ms