RNA–Protein interactions for RNA: YNR004W

SWM2, Transcript of Protein with a role in snRNA and snoRNA cap trimethylation, yeast

Gene SWM2, Length 441 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SWM2	YNR004W	SNO3	P43544	222 aa		3.21	□□□□□ -1.9
SWM2	YNR004W	RSC8	P43609	557 aa	Known RBP	3.21	□□□□□ -1.9
SWM2	YNR004W	ATG36	P46983	293 aa		3.21	□□□□□ -1.9
SWM2	YNR004W	YGR237C	P50089	785 aa		3.21	□□□□□ -1.9
SWM2	YNR004W	UME1	Q03010	460 aa		3.21	□□□□□ -1.9
SWM2	YNR004W	RPN7	Q06103	429 aa	Known RBP	3.21	□□□□□ -1.9
SWM2	YNR004W	ATG33	Q06485	197 aa		3.21	□□□□□ -1.9
SWM2	YNR004W	PRS5	Q12265	496 aa	Known RBP	3.21	□□□□□ -1.9
SWM2	YNR004W	SSB1	P11484	613 aa	Known RBP	3.2	□□□□□ -1.9
SWM2	YNR004W	NTH1	P32356	751 aa		3.2	□□□□□ -1.9
SWM2	YNR004W	YKR075C	P36155	307 aa		3.2	□□□□□ -1.9
SWM2	YNR004W	TYS1	P36421	394 aa	Known RBP	3.2	□□□□□ -1.9
SWM2	YNR004W	JHD1	P40034	492 aa		3.2	□□□□□ -1.9
SWM2	YNR004W	SSB2	P40150	613 aa	Known RBP	3.2	□□□□□ -1.9
SWM2	YNR004W	YNL195C	P40168	261 aa		3.2	□□□□□ -1.9
SWM2	YNR004W	DUG1	P43616	481 aa	Known RBP	3.2	□□□□□ -1.9
SWM2	YNR004W	NMD5	P46970	1048 aa		3.2	□□□□□ -1.9
SWM2	YNR004W	TY4A-J	P47023	414 aa		3.2	□□□□□ -1.9
SWM2	YNR004W	YJR142W	P47173	342 aa		3.2	□□□□□ -1.9
SWM2	YNR004W	ENP2	P48234	707 aa	Known RBP	3.2	□□□□□ -1.9
SWM2	YNR004W	RFX1	P48743	811 aa		3.2	□□□□□ -1.9
SWM2	YNR004W	NUP53	Q03790	475 aa		3.2	□□□□□ -1.9
SWM2	YNR004W	UFO1	Q04511	668 aa		3.2	□□□□□ -1.9
SWM2	YNR004W	FEN2	P25621	512 aa	Known RBP	3.19	□□□□□ -1.9
SWM2	YNR004W	MRPL9	P31334	269 aa		3.19	□□□□□ -1.9
SWM2	YNR004W	GRX4	P32642	244 aa		3.19	□□□□□ -1.9
SWM2	YNR004W	SEC6	P32844	805 aa		3.19	□□□□□ -1.9
SWM2	YNR004W	GID8	P40208	455 aa		3.19	□□□□□ -1.9
SWM2	YNR004W	RET2	P43621	546 aa		3.19	□□□□□ -1.9
SWM2	YNR004W	MNN11	P46985	422 aa	Known RBP	3.19	□□□□□ -1.9
SWM2	YNR004W	PCL10	P53124	433 aa		3.19	□□□□□ -1.9
SWM2	YNR004W	MET13	P53128	600 aa		3.19	□□□□□ -1.9
SWM2	YNR004W	YGL117W	P53133	265 aa		3.19	□□□□□ -1.9
SWM2	YNR004W	FAP7	Q12055	197 aa	Predicted RBP	3.19	□□□□□ -1.9
SWM2	YNR004W	NUP145	P49687	1317 aa		3.19	□□□□□ -1.9
SWM2	YNR004W	ERG20	P08524	352 aa	Known RBP	3.18	□□□□□ -1.9
SWM2	YNR004W	MEF1	P25039	761 aa		3.18	□□□□□ -1.9
SWM2	YNR004W	TOM20	P35180	183 aa		3.18	□□□□□ -1.9
SWM2	YNR004W	TDA3	P38758	523 aa		3.18	□□□□□ -1.9
SWM2	YNR004W	CPR8	P53728	308 aa		3.18	□□□□□ -1.9
SWM2	YNR004W	PPN1	Q04119	674 aa		3.18	□□□□□ -1.9
SWM2	YNR004W	PRP22	P24384	1145 aa	Known RBP	3.17	□□□□□ -1.9
SWM2	YNR004W	PRP19	P32523	503 aa	Known RBP	3.17	□□□□□ -1.9
SWM2	YNR004W	SSZ1	P38788	538 aa	Known RBP	3.17	□□□□□ -1.9
SWM2	YNR004W	YAT2	P40017	923 aa		3.17	□□□□□ -1.9
SWM2	YNR004W	YJR039W	P47107	1121 aa		3.17	□□□□□ -1.9
SWM2	YNR004W	SNF12	P53628	566 aa		3.17	□□□□□ -1.9
SWM2	YNR004W	PTA1	Q01329	785 aa	Predicted RBP	3.17	□□□□□ -1.9
SWM2	YNR004W	MTQ2	Q03920	221 aa	Predicted RBP	3.17	□□□□□ -1.9
SWM2	YNR004W	TRE2	Q08693	809 aa		3.17	□□□□□ -1.9
SWM2	YNR004W	APM4	Q99186	491 aa		3.17	□□□□□ -1.9
SWM2	YNR004W	LEU2	P04173	364 aa	Predicted RBP	3.16	□□□□□ -1.9
SWM2	YNR004W	AEP2	P22136	580 aa		3.16	□□□□□ -1.9
SWM2	YNR004W	APN2	P38207	520 aa		3.16	□□□□□ -1.9
SWM2	YNR004W	RIM4	P38741	713 aa		3.16	□□□□□ -1.9
SWM2	YNR004W	YIL077C	P40508	320 aa		3.16	□□□□□ -1.9
SWM2	YNR004W	SET2	P46995	733 aa	Known RBP	3.16	□□□□□ -1.9
SWM2	YNR004W	RSC9	Q03124	581 aa		3.16	□□□□□ -1.9
SWM2	YNR004W	YOR111W	Q99210	232 aa		3.16	□□□□□ -1.9
SWM2	YNR004W	TUF1	P02992	437 aa	Known RBP	3.15	□□□□□ -1.91
SWM2	YNR004W	HEM1	P09950	548 aa	Predicted RBP	3.15	□□□□□ -1.91
SWM2	YNR004W	ELF1	P36053	145 aa		3.15	□□□□□ -1.91
SWM2	YNR004W	GPP1	P41277	250 aa	Known RBP	3.15	□□□□□ -1.91
SWM2	YNR004W	YJR096W	P47137	282 aa		3.15	□□□□□ -1.91
SWM2	YNR004W	YGR153W	P48238	217 aa		3.15	□□□□□ -1.91
SWM2	YNR004W	SLD3	P53135	668 aa		3.15	□□□□□ -1.91
SWM2	YNR004W	RMP1	Q12530	201 aa		3.15	□□□□□ -1.91
SWM2	YNR004W	HMG1	P12683	1054 aa		3.14	□□□□□ -1.91
SWM2	YNR004W	PET127	P32606	800 aa		3.14	□□□□□ -1.91
SWM2	YNR004W	YKR051W	P36142	418 aa		3.14	□□□□□ -1.91
SWM2	YNR004W	OAF1	P39720	1047 aa	Predicted RBP	3.14	□□□□□ -1.91
SWM2	YNR004W	YEN1	P40028	759 aa		3.14	□□□□□ -1.91
SWM2	YNR004W	PAP2	P53632	584 aa	Known RBP	3.14	□□□□□ -1.91
SWM2	YNR004W	YMR210W	Q03649	449 aa		3.14	□□□□□ -1.91
SWM2	YNR004W	SKY1	Q03656	742 aa		3.14	□□□□□ -1.91
SWM2	YNR004W	TRS23	Q03784	219 aa		3.14	□□□□□ -1.91
SWM2	YNR004W	NDD1	Q08887	554 aa		3.14	□□□□□ -1.91
SWM2	YNR004W	PMA2	P19657	947 aa		3.13	□□□□□ -1.91
SWM2	YNR004W	SEC15	P22224	910 aa		3.13	□□□□□ -1.91
SWM2	YNR004W	SSD1	P24276	1250 aa	Known RBP RIP-Chip data	3.13	□□□□□ -1.91	not detected
SWM2	YNR004W	MSS1	P32559	526 aa	Predicted RBP	3.13	□□□□□ -1.91
SWM2	YNR004W	MNN4	P36044	1178 aa		3.13	□□□□□ -1.91
SWM2	YNR004W	AKL1	P38080	1108 aa	Known RBP	3.13	□□□□□ -1.91
SWM2	YNR004W	YBR071W	P38243	211 aa		3.13	□□□□□ -1.91
SWM2	YNR004W	BEM4	P39011	633 aa		3.13	□□□□□ -1.91
SWM2	YNR004W	SSP120	P39931	234 aa	Known RBP	3.13	□□□□□ -1.91
SWM2	YNR004W	AIM14	P53109	570 aa		3.13	□□□□□ -1.91
SWM2	YNR004W	DAK1	P54838	584 aa	Known RBP	3.13	□□□□□ -1.91
SWM2	YNR004W	NSE5	Q03718	556 aa		3.13	□□□□□ -1.91
SWM2	YNR004W	ENT2	Q05785	613 aa		3.13	□□□□□ -1.91
SWM2	YNR004W	HFI1	Q12060	488 aa		3.13	□□□□□ -1.91
SWM2	YNR004W	YAP1	P19880	650 aa	Known RBP	3.12	□□□□□ -1.91
SWM2	YNR004W	URE2	P23202	354 aa	Known RBP	3.12	□□□□□ -1.91
SWM2	YNR004W	KIN82	P25341	720 aa		3.12	□□□□□ -1.91
SWM2	YNR004W	TAF5	P38129	798 aa		3.12	□□□□□ -1.91
SWM2	YNR004W	APD1	P38281	316 aa		3.12	□□□□□ -1.91
SWM2	YNR004W	YHR202W	P38887	602 aa		3.12	□□□□□ -1.91
SWM2	YNR004W	PXA1	P41909	870 aa		3.12	□□□□□ -1.91
SWM2	YNR004W	RNR4	P49723	345 aa	Known RBP	3.12	□□□□□ -1.91
SWM2	YNR004W	SPC105	P53148	917 aa		3.12	□□□□□ -1.91

Retrieved 100 of 5,963 RNA–protein pairs in 32.9 ms