RNA–Protein interactions for RNA: YDR427W

RPN9, Transcript of Non-ATPase regulatory subunit of the 26S proteasome, yeast

Gene RPN9, Length 1,182 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RPN9	YDR427W	COS111	P38308	924 aa		4.65	□□□□□ -1.67
RPN9	YDR427W	YIL077C	P40508	320 aa		4.65	□□□□□ -1.67
RPN9	YDR427W	PXA1	P41909	870 aa		4.65	□□□□□ -1.67
RPN9	YDR427W	NIT2	P47016	307 aa		4.65	□□□□□ -1.67
RPN9	YDR427W	RFX1	P48743	811 aa		4.65	□□□□□ -1.67
RPN9	YDR427W	MPS1	P54199	764 aa		4.65	□□□□□ -1.67
RPN9	YDR427W	NSE5	Q03718	556 aa		4.65	□□□□□ -1.67
RPN9	YDR427W	YFT2	Q06676	274 aa		4.65	□□□□□ -1.67
RPN9	YDR427W	GLN4	P13188	809 aa	Known RBP	4.64	□□□□□ -1.67
RPN9	YDR427W	ACO1	P19414	778 aa	Known RBP RIP-Chip data	4.64	□□□□□ -1.67	not detected
RPN9	YDR427W	PRP22	P24384	1145 aa	Known RBP	4.64	□□□□□ -1.67
RPN9	YDR427W	MF(ALPHA)2	P32435	120 aa		4.64	□□□□□ -1.67
RPN9	YDR427W	DAL3	P32459	195 aa		4.64	□□□□□ -1.67
RPN9	YDR427W	SET3	P36124	751 aa		4.64	□□□□□ -1.67
RPN9	YDR427W	YBR071W	P38243	211 aa		4.64	□□□□□ -1.67
RPN9	YDR427W	VID28	P40547	921 aa		4.64	□□□□□ -1.67
RPN9	YDR427W	STB2	P46679	850 aa		4.64	□□□□□ -1.67
RPN9	YDR427W	NOP56	Q12460	504 aa	Known RBP RIP-Chip data	4.64	□□□□□ -1.67	not detected
RPN9	YDR427W	TMA17	Q12513	150 aa		4.64	□□□□□ -1.67
RPN9	YDR427W	PGK1	P00560	416 aa	Known RBP	4.63	□□□□□ -1.67
RPN9	YDR427W	PRE4	P30657	266 aa		4.63	□□□□□ -1.67
RPN9	YDR427W	DUN1	P39009	513 aa		4.63	□□□□□ -1.67
RPN9	YDR427W	XBP1	P40489	647 aa		4.63	□□□□□ -1.67
RPN9	YDR427W	MPS3	P47069	682 aa		4.63	□□□□□ -1.67
RPN9	YDR427W	TAF4	P50105	388 aa		4.63	□□□□□ -1.67
RPN9	YDR427W	SPO1	P53541	631 aa		4.63	□□□□□ -1.67
RPN9	YDR427W	SKY1	Q03656	742 aa		4.63	□□□□□ -1.67
RPN9	YDR427W	PPN1	Q04119	674 aa		4.63	□□□□□ -1.67
RPN9	YDR427W	USV1	Q12132	391 aa		4.63	□□□□□ -1.67
RPN9	YDR427W	MTC7	P32633	139 aa		4.62	□□□□□ -1.67
RPN9	YDR427W	SER1	P33330	395 aa	Known RBP	4.62	□□□□□ -1.67
RPN9	YDR427W	CTP1	P38152	299 aa		4.62	□□□□□ -1.67
RPN9	YDR427W	KHA1	P40309	873 aa		4.62	□□□□□ -1.67
RPN9	YDR427W	YGR151C	P53287	111 aa		4.62	□□□□□ -1.67
RPN9	YDR427W	COG6	P53959	839 aa		4.62	□□□□□ -1.67
RPN9	YDR427W	TRE2	Q08693	809 aa		4.62	□□□□□ -1.67
RPN9	YDR427W	RMP1	Q12530	201 aa		4.62	□□□□□ -1.67
RPN9	YDR427W	RPS9B	P05755	195 aa	Known RBP	4.61	□□□□□ -1.67
RPN9	YDR427W	ATP12	P22135	325 aa		4.61	□□□□□ -1.67
RPN9	YDR427W	AEP2	P22136	580 aa		4.61	□□□□□ -1.67
RPN9	YDR427W	RPA135	P22138	1203 aa	Known RBP	4.61	□□□□□ -1.67
RPN9	YDR427W	SEC15	P22224	910 aa		4.61	□□□□□ -1.67
RPN9	YDR427W	MRC1	P25588	1096 aa		4.61	□□□□□ -1.67
RPN9	YDR427W	FUB1	P25659	250 aa		4.61	□□□□□ -1.67
RPN9	YDR427W	CDS1	P38221	457 aa		4.61	□□□□□ -1.67
RPN9	YDR427W	ENP1	P38333	483 aa	Known RBP	4.61	□□□□□ -1.67
RPN9	YDR427W	YHR097C	P38809	366 aa	Known RBP	4.61	□□□□□ -1.67
RPN9	YDR427W	YJR120W	P47157	116 aa		4.61	□□□□□ -1.67
RPN9	YDR427W	ENP2	P48234	707 aa	Known RBP	4.61	□□□□□ -1.67
RPN9	YDR427W	BPL1	P48445	690 aa	Predicted RBP	4.61	□□□□□ -1.67
RPN9	YDR427W	HLR1	Q04429	423 aa		4.61	□□□□□ -1.67
RPN9	YDR427W	YDL086W	Q07505	273 aa		4.61	□□□□□ -1.67
RPN9	YDR427W	IZH3	Q07959	543 aa		4.61	□□□□□ -1.67
RPN9	YDR427W	SSB1	P11484	613 aa	Known RBP	4.6	□□□□□ -1.67
RPN9	YDR427W	SSB2	P40150	613 aa	Known RBP	4.6	□□□□□ -1.67
RPN9	YDR427W	RNR4	P49723	345 aa	Known RBP	4.6	□□□□□ -1.67
RPN9	YDR427W	FDC1	Q03034	503 aa		4.6	□□□□□ -1.67
RPN9	YDR427W	YPR027C	Q12079	277 aa		4.6	□□□□□ -1.67
RPN9	YDR427W	ABF1	P14164	731 aa		4.59	□□□□□ -1.67
RPN9	YDR427W	HEM12	P32347	362 aa	Predicted RBP	4.59	□□□□□ -1.67
RPN9	YDR427W	NTH1	P32356	751 aa		4.59	□□□□□ -1.67
RPN9	YDR427W	HXT4	P32467	576 aa		4.59	□□□□□ -1.67
RPN9	YDR427W	GMH1	P36125	273 aa		4.59	□□□□□ -1.67
RPN9	YDR427W	CRG1	P38892	291 aa	RIP-Chip data	4.59	□□□□□ -1.67	not detected
RPN9	YDR427W	PRM2	P40534	656 aa		4.59	□□□□□ -1.67
RPN9	YDR427W	FMP30	Q02883	468 aa		4.59	□□□□□ -1.67
RPN9	YDR427W	YSH1	Q06224	779 aa	Predicted RBP	4.59	□□□□□ -1.67
RPN9	YDR427W	NGL1	Q08213	363 aa	Known RBP	4.59	□□□□□ -1.67
RPN9	YDR427W	BMS1	Q08965	1183 aa	Known RBP	4.59	□□□□□ -1.67
RPN9	YDR427W	NUP1	P20676	1076 aa		4.58	□□□□□ -1.68
RPN9	YDR427W	KCC4	P25389	1037 aa		4.58	□□□□□ -1.68
RPN9	YDR427W	DGR2	P32330	852 aa		4.58	□□□□□ -1.68
RPN9	YDR427W	KSP1	P38691	1029 aa	Known RBP	4.58	□□□□□ -1.68
RPN9	YDR427W	FTR1	P40088	404 aa		4.58	□□□□□ -1.68
RPN9	YDR427W	IRC5	P43610	853 aa		4.58	□□□□□ -1.68
RPN9	YDR427W	SNF12	P53628	566 aa		4.58	□□□□□ -1.68
RPN9	YDR427W	SRP68	P38687	599 aa	Known RBP	4.57	□□□□□ -1.68
RPN9	YDR427W	TMN3	P40071	706 aa		4.57	□□□□□ -1.68
RPN9	YDR427W	YDL183C	P48569	320 aa		4.57	□□□□□ -1.68
RPN9	YDR427W	RKI1	Q12189	258 aa		4.57	□□□□□ -1.68
RPN9	YDR427W	TUP1	P16649	713 aa		4.56	□□□□□ -1.68
RPN9	YDR427W	COX11	P19516	300 aa	Known RBP	4.56	□□□□□ -1.68
RPN9	YDR427W	PLC1	P32383	869 aa		4.56	□□□□□ -1.68
RPN9	YDR427W	RGT1	P32862	1170 aa		4.56	□□□□□ -1.68
RPN9	YDR427W	YHR033W	P38690	423 aa		4.56	□□□□□ -1.68
RPN9	YDR427W	EMP65	P40085	556 aa		4.56	□□□□□ -1.68
RPN9	YDR427W	SLD3	P53135	668 aa		4.56	□□□□□ -1.68
RPN9	YDR427W	SPC105	P53148	917 aa		4.56	□□□□□ -1.68
RPN9	YDR427W	NMA2	P53204	395 aa		4.56	□□□□□ -1.68
RPN9	YDR427W	FOL1	P53848	824 aa		4.56	□□□□□ -1.68
RPN9	YDR427W	HMG2	P12684	1045 aa		4.55	□□□□□ -1.68
RPN9	YDR427W	YMC2	P38087	329 aa		4.55	□□□□□ -1.68
RPN9	YDR427W	MIT1	P40002	666 aa		4.55	□□□□□ -1.68
RPN9	YDR427W	DIP5	P53388	608 aa		4.55	□□□□□ -1.68
RPN9	YDR427W	LAM4	P38800	1345 aa		4.54	□□□□□ -1.68
RPN9	YDR427W	YEL076C-A	P0CX16	216 aa		4.54	□□□□□ -1.68
RPN9	YDR427W	YLR464W	P0CX17	216 aa		4.54	□□□□□ -1.68
RPN9	YDR427W	SAT4	P25333	603 aa	Known RBP	4.54	□□□□□ -1.68
RPN9	YDR427W	RMA1	P36001	430 aa	Known RBP	4.54	□□□□□ -1.68
RPN9	YDR427W	ELF1	P36053	145 aa		4.54	□□□□□ -1.68

Retrieved 100 of 5,963 RNA–protein pairs in 96.5 ms