RNA–Protein interactions for RNA: YOL142W

RRP40, Transcript of Exosome non-catalytic core component, yeast

Gene RRP40, Length 723 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RRP40	YOL142W	BAP3	P41815	604 aa		6.18	□□□□□ -1.42
RRP40	YOL142W	STB4	P50104	949 aa		6.18	□□□□□ -1.42
RRP40	YOL142W	ACF2	Q12168	779 aa		6.18	□□□□□ -1.42
RRP40	YOL142W	TRZ1	P36159	838 aa	Predicted RBP	6.17	□□□□□ -1.42
RRP40	YOL142W	APT2	P36973	181 aa		6.17	□□□□□ -1.42
RRP40	YOL142W	FPR3	P38911	411 aa	Known RBP	6.17	□□□□□ -1.42
RRP40	YOL142W	YJR142W	P47173	342 aa		6.17	□□□□□ -1.42
RRP40	YOL142W	MTL1	P53214	551 aa		6.17	□□□□□ -1.42
RRP40	YOL142W	MAK10	Q02197	733 aa		6.17	□□□□□ -1.42
RRP40	YOL142W	LEE1	Q02799	301 aa	Known RBP	6.17	□□□□□ -1.42
RRP40	YOL142W	HIS7	P33734	552 aa	Known RBP	6.16	□□□□□ -1.42
RRP40	YOL142W	GID8	P40208	455 aa		6.16	□□□□□ -1.42
RRP40	YOL142W	DAS1	P47005	663 aa		6.16	□□□□□ -1.42
RRP40	YOL142W	UBC11	P52492	156 aa		6.16	□□□□□ -1.42
RRP40	YOL142W	BRE5	P53741	515 aa	Known RBP	6.16	□□□□□ -1.42
RRP40	YOL142W	MCH5	Q08777	521 aa		6.16	□□□□□ -1.42
RRP40	YOL142W	RAV1	P47104	1357 aa		6.16	□□□□□ -1.42
RRP40	YOL142W	ERG6	P25087	383 aa	Known RBP	6.15	□□□□□ -1.42
RRP40	YOL142W	LYS9	P38999	446 aa		6.15	□□□□□ -1.42
RRP40	YOL142W	HLJ1	P48353	224 aa		6.15	□□□□□ -1.42
RRP40	YOL142W	REC102	Q02721	264 aa		6.15	□□□□□ -1.42
RRP40	YOL142W	CTK1	Q03957	528 aa	Known RBP	6.15	□□□□□ -1.42
RRP40	YOL142W	HMO1	Q03973	246 aa	Known RBP	6.15	□□□□□ -1.42
RRP40	YOL142W	DCS2	Q12123	353 aa		6.15	□□□□□ -1.42
RRP40	YOL142W	HRP1	Q99383	534 aa	Known RBP	6.15	□□□□□ -1.42
RRP40	YOL142W	YHL017W	P38745	532 aa		6.14	□□□□□ -1.43
RRP40	YOL142W	SSZ1	P38788	538 aa	Known RBP	6.14	□□□□□ -1.43
RRP40	YOL142W	CCT3	P39077	534 aa	Known RBP	6.14	□□□□□ -1.43
RRP40	YOL142W	FMP52	P40008	231 aa		6.14	□□□□□ -1.43
RRP40	YOL142W	YJR039W	P47107	1121 aa		6.14	□□□□□ -1.43
RRP40	YOL142W	TIM44	Q01852	431 aa		6.14	□□□□□ -1.43
RRP40	YOL142W	YGR161W-C	Q3E744	92 aa		6.14	□□□□□ -1.43
RRP40	YOL142W	BCK1	Q01389	1478 aa		6.14	□□□□□ -1.43
RRP40	YOL142W	RNR1	P21524	888 aa	Known RBP	6.13	□□□□□ -1.43
RRP40	YOL142W	APN2	P38207	520 aa		6.13	□□□□□ -1.43
RRP40	YOL142W	FMO1	P38866	432 aa		6.13	□□□□□ -1.43
RRP40	YOL142W	SET2	P46995	733 aa	Known RBP	6.13	□□□□□ -1.43
RRP40	YOL142W	UBA2	P52488	636 aa		6.13	□□□□□ -1.43
RRP40	YOL142W	RIA1	P53893	1110 aa		6.13	□□□□□ -1.43
RRP40	YOL142W	HIR1	P32479	840 aa		6.12	□□□□□ -1.43
RRP40	YOL142W	NUP60	P39705	539 aa		6.12	□□□□□ -1.43
RRP40	YOL142W	YJR096W	P47137	282 aa		6.12	□□□□□ -1.43
RRP40	YOL142W	DOS2	P54858	310 aa		6.12	□□□□□ -1.43
RRP40	YOL142W	TMN2	Q04562	672 aa		6.12	□□□□□ -1.43
RRP40	YOL142W	HBT1	Q07653	1046 aa	Known RBP	6.12	□□□□□ -1.43
RRP40	YOL142W	THI73	Q07904	523 aa		6.12	□□□□□ -1.43
RRP40	YOL142W	SGO1	Q08490	590 aa		6.12	□□□□□ -1.43
RRP40	YOL142W	PYC1	P11154	1178 aa	Known RBP	6.11	□□□□□ -1.43
RRP40	YOL142W	SSD1	P24276	1250 aa	Known RBP RIP-Chip data	6.11	□□□□□ -1.43	not detected
RRP40	YOL142W	SPC42	P36094	363 aa		6.11	□□□□□ -1.43
RRP40	YOL142W	AKL1	P38080	1108 aa	Known RBP	6.11	□□□□□ -1.43
RRP40	YOL142W	CKB2	P38930	258 aa		6.11	□□□□□ -1.43
RRP40	YOL142W	GET2	P40056	285 aa		6.11	□□□□□ -1.43
RRP40	YOL142W	CFT1	Q06632	1357 aa	Known RBP	6.1	□□□□□ -1.43
RRP40	YOL142W	SIR3	P06701	978 aa		6.1	□□□□□ -1.43
RRP40	YOL142W	MVD1	P32377	396 aa	Known RBP	6.1	□□□□□ -1.43
RRP40	YOL142W	BRN1	P38170	754 aa		6.1	□□□□□ -1.43
RRP40	YOL142W	PCL5	P38794	229 aa		6.1	□□□□□ -1.43
RRP40	YOL142W	REV7	P38927	245 aa		6.1	□□□□□ -1.43
RRP40	YOL142W	TEL2	P53038	688 aa		6.1	□□□□□ -1.43
RRP40	YOL142W	COX18	P53239	316 aa		6.1	□□□□□ -1.43
RRP40	YOL142W	YNR029C	P53729	429 aa	Known RBP	6.1	□□□□□ -1.43
RRP40	YOL142W	GPD1	Q00055	391 aa	Known RBP	6.1	□□□□□ -1.43
RRP40	YOL142W	RGC1	Q06108	1083 aa	Known RBP	6.1	□□□□□ -1.43
RRP40	YOL142W	TY4B-H	P0C2J7	1802 aa		6.09	□□□□□ -1.43
RRP40	YOL142W	TY4B-J	P47024	1803 aa		6.09	□□□□□ -1.43
RRP40	YOL142W	RTC1	Q08281	1341 aa		6.09	□□□□□ -1.43
RRP40	YOL142W	PRP19	P32523	503 aa	Known RBP	6.09	□□□□□ -1.43
RRP40	YOL142W	MAL31	P38156	614 aa		6.09	□□□□□ -1.43
RRP40	YOL142W	YHR202W	P38887	602 aa		6.09	□□□□□ -1.43
RRP40	YOL142W	NUG1	P40010	520 aa	Known RBP	6.09	□□□□□ -1.43
RRP40	YOL142W	YNL195C	P40168	261 aa		6.09	□□□□□ -1.43
RRP40	YOL142W	NOP9	P47077	666 aa	Known RBP	6.09	□□□□□ -1.43
RRP40	YOL142W	PAN2	P53010	1115 aa	Predicted RBP	6.09	□□□□□ -1.43
RRP40	YOL142W	AIM44	Q99299	758 aa		6.09	□□□□□ -1.43
RRP40	YOL142W	TDA3	P38758	523 aa		6.08	□□□□□ -1.44
RRP40	YOL142W	SFB3	P38810	929 aa		6.08	□□□□□ -1.44
RRP40	YOL142W	CRP1	P38845	465 aa	Known RBP	6.08	□□□□□ -1.44
RRP40	YOL142W	HRB1	P38922	454 aa	Known RBP RIP-Chip data	6.08	□□□□□ -1.44	not detected
RRP40	YOL142W	BEM4	P39011	633 aa		6.08	□□□□□ -1.44
RRP40	YOL142W	SDS3	P40505	327 aa		6.08	□□□□□ -1.44
RRP40	YOL142W	RET2	P43621	546 aa		6.08	□□□□□ -1.44
RRP40	YOL142W	PMT3	P47190	753 aa		6.08	□□□□□ -1.44
RRP40	YOL142W	GND2	P53319	492 aa		6.08	□□□□□ -1.44
RRP40	YOL142W	UME1	Q03010	460 aa		6.08	□□□□□ -1.44
RRP40	YOL142W	ISA1	Q07821	250 aa	Predicted RBP	6.08	□□□□□ -1.44
RRP40	YOL142W	YKL033W-A	Q86ZR7	236 aa		6.08	□□□□□ -1.44
RRP40	YOL142W	ECM3	Q99252	613 aa		6.08	□□□□□ -1.44
RRP40	YOL142W	PEX1	P24004	1043 aa		6.07	□□□□□ -1.44
RRP40	YOL142W	MTH1	P35198	433 aa		6.07	□□□□□ -1.44
RRP40	YOL142W	YAP1802	P53309	568 aa		6.07	□□□□□ -1.44
RRP40	YOL142W	SSL2	Q00578	843 aa		6.07	□□□□□ -1.44
RRP40	YOL142W	MTQ2	Q03920	221 aa	Predicted RBP	6.07	□□□□□ -1.44
RRP40	YOL142W	NUP145	P49687	1317 aa		6.06	□□□□□ -1.44
RRP40	YOL142W	YKR075C	P36155	307 aa		6.06	□□□□□ -1.44
RRP40	YOL142W	CBR1	P38626	284 aa	Known RBP	6.06	□□□□□ -1.44
RRP40	YOL142W	RSC8	P43609	557 aa	Known RBP	6.06	□□□□□ -1.44
RRP40	YOL142W	KRE5	P22023	1365 aa		6.06	□□□□□ -1.44
RRP40	YOL142W	PAF1	P38351	445 aa		6.05	□□□□□ -1.44
RRP40	YOL142W	GPG1	P53130	126 aa		6.05	□□□□□ -1.44

Retrieved 100 of 5,963 RNA–protein pairs in 30.1 ms