RNA–Protein interactions for RNA: YLR055C

SPT8, Transcript of Subunit of the SAGA transcriptional regulatory complex, yeastyeast

Gene SPT8, Length 1,809 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SPT8YLR055C GVP36P40531 326 aaKnown RBP11.56□□□□□ -0.56
SPT8YLR055C YGR111WP53265 400 aa11.56□□□□□ -0.56
SPT8YLR055C YPL034WQ03083 165 aa11.56□□□□□ -0.56
SPT8YLR055C GTB1Q04924 702 aa11.56□□□□□ -0.56
SPT8YLR055C TDA5Q06417 326 aaKnown RBP11.56□□□□□ -0.56
SPT8YLR055C HFI1Q12060 488 aa11.56□□□□□ -0.56
SPT8YLR055C YDR524C-BQ3E6R4 66 aa11.56□□□□□ -0.56
SPT8YLR055C YML002WP0CF17 737 aa11.56□□□□□ -0.56
SPT8YLR055C RAD51P25454 400 aa11.56□□□□□ -0.56
SPT8YLR055C TRM2P33753 639 aa11.56□□□□□ -0.56
SPT8YLR055C ALD5P40047 520 aaKnown RBP11.56□□□□□ -0.56
SPT8YLR055C YMR134WP40207 237 aa11.56□□□□□ -0.56
SPT8YLR055C SIP5P40210 489 aaKnown RBP11.56□□□□□ -0.56
SPT8YLR055C INP51P40559 946 aaKnown RBP11.56□□□□□ -0.56
SPT8YLR055C VPS70P47161 811 aa11.56□□□□□ -0.56
SPT8YLR055C TAM41P53230 385 aa11.56□□□□□ -0.56
SPT8YLR055C LGE1Q02796 332 aaKnown RBP11.56□□□□□ -0.56
SPT8YLR055C HFD1Q04458 532 aa11.56□□□□□ -0.56
SPT8YLR055C HEM1P09950 548 aaPredicted RBP11.55□□□□□ -0.56
SPT8YLR055C SSD1P24276 1250 aaKnown RBP RIP-Chip data11.55□□□□□ -0.56not detected
SPT8YLR055C KIP2P28743 706 aa11.55□□□□□ -0.56
SPT8YLR055C SIN4P32259 974 aa11.55□□□□□ -0.56
SPT8YLR055C TOA1P32773 286 aa11.55□□□□□ -0.56
SPT8YLR055C DAS1P47005 663 aa11.55□□□□□ -0.56
SPT8YLR055C TAF6P53040 516 aa11.55□□□□□ -0.56
SPT8YLR055C UBX4P54730 416 aa11.55□□□□□ -0.56
SPT8YLR055C CDC53Q12018 815 aaKnown RBP11.55□□□□□ -0.56
SPT8YLR055C SLX4Q12098 748 aa11.55□□□□□ -0.56
SPT8YLR055C YDL206WQ12424 762 aa11.55□□□□□ -0.56
SPT8YLR055C NKP1Q12493 238 aa11.55□□□□□ -0.56
SPT8YLR055C YBP1P38315 674 aa11.54□□□□□ -0.56
SPT8YLR055C YTA12P40341 825 aa11.54□□□□□ -0.56
SPT8YLR055C TAN1P53072 289 aaPredicted RBP11.54□□□□□ -0.56
SPT8YLR055C YNL146WP53906 100 aa11.54□□□□□ -0.56
SPT8YLR055C FMP30Q02883 468 aa11.54□□□□□ -0.56
SPT8YLR055C YMR027WQ04371 470 aa11.54□□□□□ -0.56
SPT8YLR055C YKU80Q04437 629 aa11.54□□□□□ -0.56
SPT8YLR055C YPT6Q99260 215 aa11.54□□□□□ -0.56
SPT8YLR055C CMD1P06787 147 aaKnown RBP11.53□□□□□ -0.56
SPT8YLR055C WHI2P12611 486 aa11.53□□□□□ -0.56
SPT8YLR055C POP4P38336 279 aa11.53□□□□□ -0.56
SPT8YLR055C RFC3P38629 340 aa11.53□□□□□ -0.56
SPT8YLR055C ASG1P40467 964 aa11.53□□□□□ -0.56
SPT8YLR055C JJJ3P47138 172 aa11.53□□□□□ -0.56
SPT8YLR055C CLA4P48562 842 aa11.53□□□□□ -0.56
SPT8YLR055C VHS3Q08438 674 aa11.53□□□□□ -0.56
SPT8YLR055C ARI1P53111 347 aaKnown RBP11.53□□□□□ -0.56
SPT8YLR055C YDR090CQ03193 310 aa11.53□□□□□ -0.56
SPT8YLR055C YDR222WQ04925 415 aa11.53□□□□□ -0.56
SPT8YLR055C KEX2P13134 814 aa11.52□□□□□ -0.57
SPT8YLR055C TMT1P32643 299 aa11.52□□□□□ -0.57
SPT8YLR055C UBP14P38237 781 aaKnown RBP11.52□□□□□ -0.57
SPT8YLR055C LIN1P38852 340 aaPredicted RBP11.52□□□□□ -0.57
SPT8YLR055C ALA1P40825 983 aaKnown RBP11.52□□□□□ -0.57
SPT8YLR055C UBP2Q01476 1272 aa11.52□□□□□ -0.57
SPT8YLR055C DON1Q05610 365 aa11.52□□□□□ -0.57
SPT8YLR055C RRD2Q12461 358 aa11.52□□□□□ -0.57
SPT8YLR055C SFL1P20134 766 aa11.51□□□□□ -0.57
SPT8YLR055C SPC97P38863 823 aa11.51□□□□□ -0.57
SPT8YLR055C TVP23P38962 199 aa11.51□□□□□ -0.57
SPT8YLR055C FIR1P40020 876 aa11.51□□□□□ -0.57
SPT8YLR055C ALG5P40350 334 aa11.51□□□□□ -0.57
SPT8YLR055C SUM1P46676 1062 aa11.51□□□□□ -0.57
SPT8YLR055C COG6P53959 839 aa11.51□□□□□ -0.57
SPT8YLR055C UFO1Q04511 668 aa11.51□□□□□ -0.57
SPT8YLR055C SPS22P25380 463 aa11.51□□□□□ -0.57
SPT8YLR055C POT1P27796 417 aaKnown RBP RIP-Chip data11.51□□□□□ -0.57not detected
SPT8YLR055C TPS2P31688 896 aaKnown RBP11.51□□□□□ -0.57
SPT8YLR055C DPH2P32461 534 aa11.51□□□□□ -0.57
SPT8YLR055C MAC1P35192 417 aa11.51□□□□□ -0.57
SPT8YLR055C PPX1P38698 397 aa11.51□□□□□ -0.57
SPT8YLR055C OAF1P39720 1047 aaPredicted RBP11.51□□□□□ -0.57
SPT8YLR055C YFL040WP43562 540 aa11.51□□□□□ -0.57
SPT8YLR055C MCM6P53091 1017 aaKnown RBP11.51□□□□□ -0.57
SPT8YLR055C CUL3P53202 744 aa11.51□□□□□ -0.57
SPT8YLR055C PXR1P53335 271 aaPredicted RBP11.51□□□□□ -0.57
SPT8YLR055C LDB19Q12502 818 aa11.51□□□□□ -0.57
SPT8YLR055C PMS1P14242 873 aa11.5□□□□□ -0.57
SPT8YLR055C VID24P38263 362 aa11.5□□□□□ -0.57
SPT8YLR055C SEC27P41811 889 aaKnown RBP11.5□□□□□ -0.57
SPT8YLR055C YNL115CP53925 644 aa11.5□□□□□ -0.57
SPT8YLR055C MUK1Q02866 612 aa11.5□□□□□ -0.57
SPT8YLR055C PPM1Q04081 328 aa11.5□□□□□ -0.57
SPT8YLR055C RPL24AP04449 155 aaKnown RBP11.49□□□□□ -0.57
SPT8YLR055C MGT1P26188 188 aa11.49□□□□□ -0.57
SPT8YLR055C RPC19P28000 142 aaKnown RBP11.49□□□□□ -0.57
SPT8YLR055C SET3P36124 751 aa11.49□□□□□ -0.57
SPT8YLR055C STN1P38960 494 aa11.49□□□□□ -0.57
SPT8YLR055C NOG2P53742 486 aaKnown RBP11.49□□□□□ -0.57
SPT8YLR055C AEP2P22136 580 aa11.49□□□□□ -0.57
SPT8YLR055C DAL2P25335 343 aa11.49□□□□□ -0.57
SPT8YLR055C MUD1P32605 298 aaKnown RBP11.49□□□□□ -0.57
SPT8YLR055C PEX2P32800 271 aa11.49□□□□□ -0.57
SPT8YLR055C DRE2P36152 348 aa11.49□□□□□ -0.57
SPT8YLR055C TDA11P38854 504 aa11.49□□□□□ -0.57
SPT8YLR055C TFG1P41895 735 aaPredicted RBP11.49□□□□□ -0.57
SPT8YLR055C ORC5P50874 479 aa11.49□□□□□ -0.57
SPT8YLR055C MNP1P53163 194 aaPredicted RBP11.49□□□□□ -0.57
SPT8YLR055C YNL011CP53980 444 aa11.49□□□□□ -0.57
SPT8YLR055C DUG2P38149 878 aa11.48□□□□□ -0.57
Retrieved 100 of 5,963 RNA–protein pairs in 47.3 ms