RNA–Protein interactions for RNA: YJR042W

NUP85, Transcript of Subunit of the Nup84p subcomplex of the nuclear pore complex (NPC), yeast

Gene NUP85, Length 2,235 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NUP85	YJR042W	NSI1	Q12457	570 aa		4.07	□□□□□ -1.76
NUP85	YJR042W	ENA1	P13587	1091 aa		4.07	□□□□□ -1.76
NUP85	YJR042W	UBC1	P21734	215 aa	Known RBP	4.07	□□□□□ -1.76
NUP85	YJR042W	AAR2	P32357	355 aa	Predicted RBP	4.07	□□□□□ -1.76
NUP85	YJR042W	CDC12	P32468	407 aa	Known RBP	4.07	□□□□□ -1.76
NUP85	YJR042W	DLD1	P32891	587 aa		4.07	□□□□□ -1.76
NUP85	YJR042W	APM3	P38153	483 aa		4.07	□□□□□ -1.76
NUP85	YJR042W	PRE3	P38624	215 aa		4.07	□□□□□ -1.76
NUP85	YJR042W	RAD26	P40352	1085 aa		4.07	□□□□□ -1.76
NUP85	YJR042W	SEC9	P40357	651 aa		4.07	□□□□□ -1.76
NUP85	YJR042W	YJL068C	P40363	299 aa		4.07	□□□□□ -1.76
NUP85	YJR042W	SMK1	P41808	388 aa		4.07	□□□□□ -1.76
NUP85	YJR042W	POL31	P46957	487 aa		4.07	□□□□□ -1.76
NUP85	YJR042W	YJR039W	P47107	1121 aa		4.07	□□□□□ -1.76
NUP85	YJR042W	GUP1	P53154	560 aa		4.07	□□□□□ -1.76
NUP85	YJR042W	LAP3	Q01532	483 aa	Known RBP RIP-Chip data	4.07	□□□□□ -1.76	not detected
NUP85	YJR042W	ENA2	Q01896	1091 aa		4.07	□□□□□ -1.76
NUP85	YJR042W	YLH47	Q06493	454 aa		4.07	□□□□□ -1.76
NUP85	YJR042W	ENA5	Q12691	1091 aa		4.07	□□□□□ -1.76
NUP85	YJR042W	YOL159C-A	Q3E769	90 aa		4.07	□□□□□ -1.76
NUP85	YJR042W	ISN1	Q99312	450 aa		4.07	□□□□□ -1.76
NUP85	YJR042W	RAD9	P14737	1309 aa		4.06	□□□□□ -1.76
NUP85	YJR042W	CKA1	P15790	372 aa		4.06	□□□□□ -1.76
NUP85	YJR042W	SGF29	P25554	259 aa		4.06	□□□□□ -1.76
NUP85	YJR042W	MSH1	P25846	959 aa		4.06	□□□□□ -1.76
NUP85	YJR042W	KNS1	P32350	737 aa	Predicted RBP	4.06	□□□□□ -1.76
NUP85	YJR042W	XRS2	P33301	854 aa		4.06	□□□□□ -1.76
NUP85	YJR042W	EMC3	P36039	253 aa		4.06	□□□□□ -1.76
NUP85	YJR042W	YIL092W	P40497	633 aa		4.06	□□□□□ -1.76
NUP85	YJR042W	SLS1	P42900	643 aa		4.06	□□□□□ -1.76
NUP85	YJR042W	OCA1	P50946	238 aa	Predicted RBP	4.06	□□□□□ -1.76
NUP85	YJR042W	PRO2	P54885	456 aa	Known RBP	4.06	□□□□□ -1.76
NUP85	YJR042W	HOS3	Q02959	697 aa	Known RBP	4.06	□□□□□ -1.76
NUP85	YJR042W	EAR1	Q03212	550 aa		4.06	□□□□□ -1.76
NUP85	YJR042W	RAD33	Q04231	177 aa		4.06	□□□□□ -1.76
NUP85	YJR042W	DUS3	Q06053	668 aa	Known RBP	4.06	□□□□□ -1.76
NUP85	YJR042W	YDL144C	Q07589	356 aa		4.06	□□□□□ -1.76
NUP85	YJR042W	BNI1	P41832	1953 aa		4.06	□□□□□ -1.76
NUP85	YJR042W	PMS1	P14242	873 aa		4.06	□□□□□ -1.76
NUP85	YJR042W	VMA2	P16140	517 aa	Known RBP	4.06	□□□□□ -1.76
NUP85	YJR042W	SWC3	P31376	625 aa		4.06	□□□□□ -1.76
NUP85	YJR042W	FUN30	P31380	1131 aa		4.06	□□□□□ -1.76
NUP85	YJR042W	RIB7	P33312	244 aa		4.06	□□□□□ -1.76
NUP85	YJR042W	LYS14	P40971	790 aa		4.06	□□□□□ -1.76
NUP85	YJR042W	IRC5	P43610	853 aa		4.06	□□□□□ -1.76
NUP85	YJR042W	NOP9	P47077	666 aa	Known RBP	4.06	□□□□□ -1.76
NUP85	YJR042W	CTF18	P49956	741 aa		4.06	□□□□□ -1.76
NUP85	YJR042W	HAP5	Q02516	242 aa		4.06	□□□□□ -1.76
NUP85	YJR042W	APL5	Q08951	932 aa	Known RBP	4.06	□□□□□ -1.76
NUP85	YJR042W	NOP58	Q12499	511 aa	Known RBP	4.06	□□□□□ -1.76
NUP85	YJR042W	RPL19A	P0CX82	189 aa	Known RBP	4.05	□□□□□ -1.76
NUP85	YJR042W	RPL19B	P0CX83	189 aa	Predicted RBP	4.05	□□□□□ -1.76
NUP85	YJR042W	APN1	P22936	367 aa		4.05	□□□□□ -1.76
NUP85	YJR042W	SED4	P25365	1065 aa		4.05	□□□□□ -1.76
NUP85	YJR042W	DAL80	P26343	269 aa		4.05	□□□□□ -1.76
NUP85	YJR042W	CYS3	P31373	394 aa	Known RBP	4.05	□□□□□ -1.76
NUP85	YJR042W	SLC1	P33333	303 aa		4.05	□□□□□ -1.76
NUP85	YJR042W	HSL7	P38274	827 aa		4.05	□□□□□ -1.76
NUP85	YJR042W	GND1	P38720	489 aa	Known RBP	4.05	□□□□□ -1.76
NUP85	YJR042W	TDA3	P38758	523 aa		4.05	□□□□□ -1.76
NUP85	YJR042W	CIR1	P42940	261 aa		4.05	□□□□□ -1.76
NUP85	YJR042W	SIP4	P46954	829 aa		4.05	□□□□□ -1.76
NUP85	YJR042W	UTP22	P53254	1237 aa	Predicted RBP	4.05	□□□□□ -1.76
NUP85	YJR042W	YHM2	Q04013	314 aa		4.05	□□□□□ -1.76
NUP85	YJR042W	SNO4	Q04902	237 aa		4.05	□□□□□ -1.76
NUP85	YJR042W	AVO1	Q08236	1176 aa		4.05	□□□□□ -1.76
NUP85	YJR042W	HSP33	Q08914	237 aa	Known RBP	4.05	□□□□□ -1.76
NUP85	YJR042W	HSP32	Q08992	237 aa		4.05	□□□□□ -1.76
NUP85	YJR042W	RTK1	Q12100	620 aa	Predicted RBP	4.05	□□□□□ -1.76
NUP85	YJR042W	PAR32	Q12515	295 aa	Known RBP	4.05	□□□□□ -1.76
NUP85	YJR042W	ARG3	P05150	338 aa		4.05	□□□□□ -1.76
NUP85	YJR042W	CAF20	P12962	161 aa	Known RBP	4.05	□□□□□ -1.76
NUP85	YJR042W	SUI2	P20459	304 aa	Known RBP	4.05	□□□□□ -1.76
NUP85	YJR042W	PHO3	P24031	467 aa		4.05	□□□□□ -1.76
NUP85	YJR042W	IME2	P32581	645 aa		4.05	□□□□□ -1.76
NUP85	YJR042W	CNS1	P33313	385 aa		4.05	□□□□□ -1.76
NUP85	YJR042W	ADD66	P36040	267 aa		4.05	□□□□□ -1.76
NUP85	YJR042W	ALG3	P38179	458 aa		4.05	□□□□□ -1.76
NUP85	YJR042W	SWD1	P39706	426 aa		4.05	□□□□□ -1.76
NUP85	YJR042W	SGF73	P53165	657 aa		4.05	□□□□□ -1.76
NUP85	YJR042W	BNI5	P53890	448 aa	Known RBP	4.05	□□□□□ -1.76
NUP85	YJR042W	CBK1	P53894	756 aa		4.05	□□□□□ -1.76
NUP85	YJR042W	ERV25	P54837	211 aa	Known RBP	4.05	□□□□□ -1.76
NUP85	YJR042W	ARP4	P80428	489 aa		4.05	□□□□□ -1.76
NUP85	YJR042W	NHX1	Q04121	633 aa		4.05	□□□□□ -1.76
NUP85	YJR042W	HRQ1	Q05549	1077 aa		4.05	□□□□□ -1.76
NUP85	YJR042W	SWA2	Q06677	668 aa		4.05	□□□□□ -1.76
NUP85	YJR042W	CWC2	Q12046	339 aa	Predicted RBP	4.05	□□□□□ -1.76
NUP85	YJR042W	GNT1	Q12096	491 aa		4.05	□□□□□ -1.76
NUP85	YJR042W	RTN2	Q12443	393 aa		4.05	□□□□□ -1.76
NUP85	YJR042W	PCD1	Q12524	340 aa		4.05	□□□□□ -1.76
NUP85	YJR042W	YML133C	Q03099	1374 aa		4.04	□□□□□ -1.76
NUP85	YJR042W	YLL067C	Q07888	1374 aa		4.04	□□□□□ -1.76
NUP85	YJR042W	YLL066C	Q99208	1374 aa		4.04	□□□□□ -1.76
NUP85	YJR042W	USO1	P25386	1790 aa		4.04	□□□□□ -1.76
NUP85	YJR042W	HTS1	P07263	546 aa	Known RBP	4.04	□□□□□ -1.76
NUP85	YJR042W	FUM1	P08417	488 aa	Known RBP	4.04	□□□□□ -1.76
NUP85	YJR042W	GPI10	P30777	616 aa		4.04	□□□□□ -1.76
NUP85	YJR042W	PGM2	P37012	569 aa	Known RBP	4.04	□□□□□ -1.76
NUP85	YJR042W	YRO2	P38079	344 aa		4.04	□□□□□ -1.76

Retrieved 100 of 5,963 RNA–protein pairs in 219.8 ms