RNA–Protein interactions for RNA: YHR172W

SPC97, Transcript of Component of the microtubule-nucleating Tub4p (gamma-tubulin) complex, yeast

Gene SPC97, Length 2,472 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SPC97	YHR172W	GYL1	Q04322	720 aa		5.7	□□□□□ -1.5
SPC97	YHR172W	PCD1	Q12524	340 aa		5.7	□□□□□ -1.5
SPC97	YHR172W	PYC2	P32327	1180 aa	Known RBP	5.69	□□□□□ -1.5
SPC97	YHR172W	OAF3	P36023	863 aa		5.69	□□□□□ -1.5
SPC97	YHR172W	PCH2	P38126	564 aa		5.69	□□□□□ -1.5
SPC97	YHR172W	YIL092W	P40497	633 aa		5.69	□□□□□ -1.5
SPC97	YHR172W	SET4	P42948	560 aa		5.69	□□□□□ -1.5
SPC97	YHR172W	YJR039W	P47107	1121 aa		5.69	□□□□□ -1.5
SPC97	YHR172W	PUS4	P48567	403 aa	Known RBP	5.69	□□□□□ -1.5
SPC97	YHR172W	YNL247W	P53852	767 aa	Known RBP	5.69	□□□□□ -1.5
SPC97	YHR172W	RPT6	Q01939	405 aa	Known RBP	5.69	□□□□□ -1.5
SPC97	YHR172W	CSR1	Q06705	408 aa	Known RBP	5.69	□□□□□ -1.5
SPC97	YHR172W	RTC5	Q12108	567 aa	Known RBP	5.69	□□□□□ -1.5
SPC97	YHR172W	Q0182	Q9ZZW1	134 aa		5.69	□□□□□ -1.5
SPC97	YHR172W	ADP1	P25371	1049 aa		5.69	□□□□□ -1.5
SPC97	YHR172W	CCR4	P31384	837 aa	Known RBP	5.69	□□□□□ -1.5
SPC97	YHR172W	SDS22	P36047	338 aa		5.69	□□□□□ -1.5
SPC97	YHR172W	BSD2	P38356	321 aa		5.69	□□□□□ -1.5
SPC97	YHR172W	SHU2	P38957	223 aa		5.69	□□□□□ -1.5
SPC97	YHR172W	YEL025C	P39991	1188 aa		5.69	□□□□□ -1.5
SPC97	YHR172W	NEO1	P40527	1151 aa		5.69	□□□□□ -1.5
SPC97	YHR172W	LSC1	P53598	329 aa	Known RBP	5.69	□□□□□ -1.5
SPC97	YHR172W	DAK1	P54838	584 aa	Known RBP	5.69	□□□□□ -1.5
SPC97	YHR172W	NHX1	Q04121	633 aa		5.69	□□□□□ -1.5
SPC97	YHR172W	TGL5	Q12043	749 aa		5.69	□□□□□ -1.5
SPC97	YHR172W	DED1	P06634	604 aa	Known RBP	5.68	□□□□□ -1.5
SPC97	YHR172W	MRP4	P32902	394 aa		5.68	□□□□□ -1.5
SPC97	YHR172W	ATF1	P40353	525 aa		5.68	□□□□□ -1.5
SPC97	YHR172W	PSF2	P40359	213 aa		5.68	□□□□□ -1.5
SPC97	YHR172W	DAM1	P53267	343 aa		5.68	□□□□□ -1.5
SPC97	YHR172W	SNF12	P53628	566 aa		5.68	□□□□□ -1.5
SPC97	YHR172W	NOP56	Q12460	504 aa	Known RBP RIP-Chip data	5.68	□□□□□ -1.5	not detected
SPC97	YHR172W	PUT4	P15380	627 aa		5.68	□□□□□ -1.5
SPC97	YHR172W	DBP3	P20447	523 aa	Known RBP	5.68	□□□□□ -1.5
SPC97	YHR172W	RRP43	P25359	394 aa	Predicted RBP	5.68	□□□□□ -1.5
SPC97	YHR172W	SUR1	P33300	382 aa		5.68	□□□□□ -1.5
SPC97	YHR172W	GCS1	P35197	352 aa		5.68	□□□□□ -1.5
SPC97	YHR172W	POL12	P38121	705 aa	Predicted RBP	5.68	□□□□□ -1.5
SPC97	YHR172W	IFA38	P38286	347 aa		5.68	□□□□□ -1.5
SPC97	YHR172W	YHR202W	P38887	602 aa		5.68	□□□□□ -1.5
SPC97	YHR172W	THI6	P41835	540 aa		5.68	□□□□□ -1.5
SPC97	YHR172W	GCV2	P49095	1034 aa		5.68	□□□□□ -1.5
SPC97	YHR172W	NCS6	P53088	359 aa		5.68	□□□□□ -1.5
SPC97	YHR172W	PRO2	P54885	456 aa	Known RBP	5.68	□□□□□ -1.5
SPC97	YHR172W	ERB1	Q04660	807 aa	Known RBP	5.68	□□□□□ -1.5
SPC97	YHR172W	ADE13	Q05911	482 aa	Known RBP	5.68	□□□□□ -1.5
SPC97	YHR172W	NOP6	Q07623	225 aa	Known RBP	5.68	□□□□□ -1.5
SPC97	YHR172W	WTM2	Q12206	467 aa		5.68	□□□□□ -1.5
SPC97	YHR172W	ZRT2	Q12436	422 aa		5.68	□□□□□ -1.5
SPC97	YHR172W	SEC39	Q12745	709 aa		5.68	□□□□□ -1.5
SPC97	YHR172W	YLR358C	O13565	187 aa		5.67	□□□□□ -1.5
SPC97	YHR172W	SPC110	P32380	944 aa		5.67	□□□□□ -1.5
SPC97	YHR172W	WHI3	P34761	661 aa	Known RBP	5.67	□□□□□ -1.5
SPC97	YHR172W	YKT6	P36015	200 aa	Known RBP	5.67	□□□□□ -1.5
SPC97	YHR172W	PIK1	P39104	1066 aa		5.67	□□□□□ -1.5
SPC97	YHR172W	ALD5	P40047	520 aa	Known RBP	5.67	□□□□□ -1.5
SPC97	YHR172W	SHE4	P51534	789 aa		5.67	□□□□□ -1.5
SPC97	YHR172W	UTP22	P53254	1237 aa	Predicted RBP	5.67	□□□□□ -1.5
SPC97	YHR172W	BSC5	P53755	489 aa		5.67	□□□□□ -1.5
SPC97	YHR172W	VPS75	P53853	264 aa		5.67	□□□□□ -1.5
SPC97	YHR172W	GIM3	P53900	129 aa		5.67	□□□□□ -1.5
SPC97	YHR172W	ARP5	P53946	755 aa		5.67	□□□□□ -1.5
SPC97	YHR172W	PNG1	Q02890	363 aa		5.67	□□□□□ -1.5
SPC97	YHR172W	SNO4	Q04902	237 aa		5.67	□□□□□ -1.5
SPC97	YHR172W	DUS3	Q06053	668 aa	Known RBP	5.67	□□□□□ -1.5
SPC97	YHR172W	SPH1	Q06160	661 aa		5.67	□□□□□ -1.5
SPC97	YHR172W	EMG1	Q06287	252 aa	Known RBP	5.67	□□□□□ -1.5
SPC97	YHR172W	MET7	Q08645	548 aa		5.67	□□□□□ -1.5
SPC97	YHR172W	YOR296W	Q08748	1289 aa		5.67	□□□□□ -1.5
SPC97	YHR172W	HSP33	Q08914	237 aa	Known RBP	5.67	□□□□□ -1.5
SPC97	YHR172W	HSP32	Q08992	237 aa		5.67	□□□□□ -1.5
SPC97	YHR172W	RPS21B	Q3E754	87 aa	Known RBP	5.67	□□□□□ -1.5
SPC97	YHR172W	ADE8	P04161	214 aa		5.67	□□□□□ -1.5
SPC97	YHR172W	TPK1	P06244	397 aa		5.67	□□□□□ -1.5
SPC97	YHR172W	KIP1	P28742	1111 aa		5.67	□□□□□ -1.5
SPC97	YHR172W	YUH1	P35127	236 aa		5.67	□□□□□ -1.5
SPC97	YHR172W	APE3	P37302	537 aa	Known RBP	5.67	□□□□□ -1.5
SPC97	YHR172W	RIM11	P38615	370 aa		5.67	□□□□□ -1.5
SPC97	YHR172W	SPO22	P40511	975 aa		5.67	□□□□□ -1.5
SPC97	YHR172W	MPH1	P40562	993 aa		5.67	□□□□□ -1.5
SPC97	YHR172W	STU2	P46675	888 aa		5.67	□□□□□ -1.5
SPC97	YHR172W	HNT2	P49775	206 aa		5.67	□□□□□ -1.5
SPC97	YHR172W	HFM1	P51979	1187 aa		5.67	□□□□□ -1.5
SPC97	YHR172W	REX2	P54964	269 aa	Known RBP	5.67	□□□□□ -1.5
SPC97	YHR172W	TOF2	Q02208	771 aa		5.67	□□□□□ -1.5
SPC97	YHR172W	YAP6	Q03935	383 aa		5.67	□□□□□ -1.5
SPC97	YHR172W	VBA4	Q04602	768 aa	Known RBP	5.67	□□□□□ -1.5
SPC97	YHR172W	EST2	Q06163	884 aa		5.67	□□□□□ -1.5
SPC97	YHR172W	PSY3	Q12318	242 aa		5.67	□□□□□ -1.5
SPC97	YHR172W	ADF1	Q2V2Q1	113 aa		5.67	□□□□□ -1.5
SPC97	YHR172W	RPP2B	P02400	110 aa	Known RBP	5.66	□□□□□ -1.5
SPC97	YHR172W	APE1	P14904	514 aa		5.66	□□□□□ -1.5
SPC97	YHR172W	ATP12	P22135	325 aa		5.66	□□□□□ -1.5
SPC97	YHR172W	MLF3	P32047	452 aa		5.66	□□□□□ -1.5
SPC97	YHR172W	YEL043W	P32618	956 aa		5.66	□□□□□ -1.5
SPC97	YHR172W	MDL2	P33311	773 aa		5.66	□□□□□ -1.5
SPC97	YHR172W	EMC3	P36039	253 aa		5.66	□□□□□ -1.5
SPC97	YHR172W	PGM2	P37012	569 aa	Known RBP	5.66	□□□□□ -1.5
SPC97	YHR172W	PTC4	P38089	393 aa		5.66	□□□□□ -1.5
SPC97	YHR172W	BPL1	P48445	690 aa	Predicted RBP	5.66	□□□□□ -1.5

Retrieved 100 of 5,963 RNA–protein pairs in 361.6 ms