RNA–Protein interactions for RNA: YGR074W

SMD1, Transcript of Core Sm protein Sm D1, yeast

Gene SMD1, Length 441 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SMD1	YGR074W	PPN1	Q04119	674 aa		2.61	□□□□□ -1.99
SMD1	YGR074W	VBA4	Q04602	768 aa	Known RBP	2.61	□□□□□ -1.99
SMD1	YGR074W	RRP6	Q12149	733 aa	Known RBP	2.61	□□□□□ -1.99
SMD1	YGR074W	LAS17	Q12446	633 aa		2.61	□□□□□ -1.99
SMD1	YGR074W	GAL1	P04385	528 aa		2.6	□□□□□ -1.99
SMD1	YGR074W	RPS9B	P05755	195 aa	Known RBP	2.6	□□□□□ -1.99
SMD1	YGR074W	MET3	P08536	511 aa		2.6	□□□□□ -1.99
SMD1	YGR074W	PYC1	P11154	1178 aa	Known RBP	2.6	□□□□□ -1.99
SMD1	YGR074W	GLN4	P13188	809 aa	Known RBP	2.6	□□□□□ -1.99
SMD1	YGR074W	MRS6	P32864	603 aa	Known RBP	2.6	□□□□□ -1.99
SMD1	YGR074W	MTH1	P35198	433 aa		2.6	□□□□□ -1.99
SMD1	YGR074W	VPS24	P36095	224 aa	Known RBP	2.6	□□□□□ -1.99
SMD1	YGR074W	SRP68	P38687	599 aa	Known RBP	2.6	□□□□□ -1.99
SMD1	YGR074W	BEM4	P39011	633 aa		2.6	□□□□□ -1.99
SMD1	YGR074W	HIS6	P40545	261 aa		2.6	□□□□□ -1.99
SMD1	YGR074W	FAF1	P40546	346 aa	Predicted RBP	2.6	□□□□□ -1.99
SMD1	YGR074W	VID28	P40547	921 aa		2.6	□□□□□ -1.99
SMD1	YGR074W	PXA1	P41909	870 aa		2.6	□□□□□ -1.99
SMD1	YGR074W	AMA1	P50082	593 aa		2.6	□□□□□ -1.99
SMD1	YGR074W	NOP15	P53927	220 aa	Predicted RBP	2.6	□□□□□ -1.99
SMD1	YGR074W	UBX4	P54730	416 aa		2.6	□□□□□ -1.99
SMD1	YGR074W	TGL2	P54857	326 aa		2.6	□□□□□ -1.99
SMD1	YGR074W	MCM21	Q06675	368 aa		2.6	□□□□□ -1.99
SMD1	YGR074W	TUB3	P09734	445 aa	Known RBP	2.59	□□□□□ -1.99
SMD1	YGR074W	PGI1	P12709	554 aa	Known RBP	2.59	□□□□□ -1.99
SMD1	YGR074W	FRS1	P15624	595 aa	Known RBP	2.59	□□□□□ -1.99
SMD1	YGR074W	ADE2	P21264	571 aa	Known RBP	2.59	□□□□□ -1.99
SMD1	YGR074W	KIN82	P25341	720 aa		2.59	□□□□□ -1.99
SMD1	YGR074W	IMG2	P25642	146 aa	Predicted RBP	2.59	□□□□□ -1.99
SMD1	YGR074W	MSH1	P25846	959 aa		2.59	□□□□□ -1.99
SMD1	YGR074W	PET127	P32606	800 aa		2.59	□□□□□ -1.99
SMD1	YGR074W	FAT1	P38225	669 aa		2.59	□□□□□ -1.99
SMD1	YGR074W	SIC1	P38634	284 aa		2.59	□□□□□ -1.99
SMD1	YGR074W	YHR033W	P38690	423 aa		2.59	□□□□□ -1.99
SMD1	YGR074W	PMC1	P38929	1173 aa	Predicted RBP	2.59	□□□□□ -1.99
SMD1	YGR074W	FKH2	P41813	862 aa		2.59	□□□□□ -1.99
SMD1	YGR074W	MDR1	P53258	950 aa		2.59	□□□□□ -1.99
SMD1	YGR074W	GND2	P53319	492 aa		2.59	□□□□□ -1.99
SMD1	YGR074W	CNM67	P53865	581 aa	Known RBP	2.59	□□□□□ -1.99
SMD1	YGR074W	SQS1	P53866	767 aa	Known RBP	2.59	□□□□□ -1.99
SMD1	YGR074W	DLT1	Q04216	342 aa		2.59	□□□□□ -1.99
SMD1	YGR074W	ECM16	Q04217	1267 aa	Known RBP	2.59	□□□□□ -1.99
SMD1	YGR074W	ASM4	Q05166	528 aa		2.59	□□□□□ -1.99
SMD1	YGR074W	ECM38	Q05902	660 aa	Predicted RBP	2.59	□□□□□ -1.99
SMD1	YGR074W	HBT1	Q07653	1046 aa	Known RBP	2.59	□□□□□ -1.99
SMD1	YGR074W	NGL1	Q08213	363 aa	Known RBP	2.59	□□□□□ -1.99
SMD1	YGR074W	CWC2	Q12046	339 aa	Predicted RBP	2.59	□□□□□ -1.99
SMD1	YGR074W	PSF3	Q12146	194 aa		2.59	□□□□□ -1.99
SMD1	YGR074W	ATG11	Q12527	1178 aa		2.59	□□□□□ -1.99
SMD1	YGR074W	PPR1	P07272	904 aa	Predicted RBP	2.58	□□□□□ -2
SMD1	YGR074W	ALG7	P07286	448 aa		2.58	□□□□□ -2
SMD1	YGR074W	CAF20	P12962	161 aa	Known RBP	2.58	□□□□□ -2
SMD1	YGR074W	RNR1	P21524	888 aa	Known RBP	2.58	□□□□□ -2
SMD1	YGR074W	TRX2	P22803	104 aa	Known RBP	2.58	□□□□□ -2
SMD1	YGR074W	PHO3	P24031	467 aa		2.58	□□□□□ -2
SMD1	YGR074W	SER1	P33330	395 aa	Known RBP	2.58	□□□□□ -2
SMD1	YGR074W	CTF13	P35203	478 aa		2.58	□□□□□ -2
SMD1	YGR074W	YHR112C	P38716	378 aa		2.58	□□□□□ -2
SMD1	YGR074W	PPE1	P38796	400 aa		2.58	□□□□□ -2
SMD1	YGR074W	CCT3	P39077	534 aa	Known RBP	2.58	□□□□□ -2
SMD1	YGR074W	STL1	P39932	569 aa		2.58	□□□□□ -2
SMD1	YGR074W	GID8	P40208	455 aa		2.58	□□□□□ -2
SMD1	YGR074W	RSC8	P43609	557 aa	Known RBP	2.58	□□□□□ -2
SMD1	YGR074W	ASK10	P48361	1146 aa		2.58	□□□□□ -2
SMD1	YGR074W	BUL1	P48524	976 aa		2.58	□□□□□ -2
SMD1	YGR074W	TAF4	P50105	388 aa		2.58	□□□□□ -2
SMD1	YGR074W	LEE1	Q02799	301 aa	Known RBP	2.58	□□□□□ -2
SMD1	YGR074W	VPS72	Q03388	795 aa		2.58	□□□□□ -2
SMD1	YGR074W	NSE5	Q03718	556 aa		2.58	□□□□□ -2
SMD1	YGR074W	PSR2	Q07949	397 aa		2.58	□□□□□ -2
SMD1	YGR074W	TGL5	Q12043	749 aa		2.58	□□□□□ -2
SMD1	YGR074W	NUR1	Q12066	484 aa		2.58	□□□□□ -2
SMD1	YGR074W	YEL076C-A	P0CX16	216 aa		2.57	□□□□□ -2
SMD1	YGR074W	YLR464W	P0CX17	216 aa		2.57	□□□□□ -2
SMD1	YGR074W	ACO1	P19414	778 aa	Known RBP RIP-Chip data	2.57	□□□□□ -2	not detected
SMD1	YGR074W	HXT4	P32467	576 aa		2.57	□□□□□ -2
SMD1	YGR074W	FUI1	P38196	639 aa		2.57	□□□□□ -2
SMD1	YGR074W	REV7	P38927	245 aa		2.57	□□□□□ -2
SMD1	YGR074W	NAB3	P38996	802 aa	Known RBP RIP-Chip data	2.57	□□□□□ -2	not detected
SMD1	YGR074W	YEL076C	P39971	216 aa		2.57	□□□□□ -2
SMD1	YGR074W	YIL092W	P40497	633 aa		2.57	□□□□□ -2
SMD1	YGR074W	YIR042C	P40586	236 aa		2.57	□□□□□ -2
SMD1	YGR074W	YGR021W	P53212	290 aa		2.57	□□□□□ -2
SMD1	YGR074W	SPO1	P53541	631 aa		2.57	□□□□□ -2
SMD1	YGR074W	TEX1	P53851	422 aa	Known RBP	2.57	□□□□□ -2
SMD1	YGR074W	AIM41	Q12032	185 aa		2.57	□□□□□ -2
SMD1	YGR074W	HOS1	Q12214	470 aa		2.57	□□□□□ -2
SMD1	YGR074W	CLF1	Q12309	687 aa	Predicted RBP	2.57	□□□□□ -2
SMD1	YGR074W	GPR1	Q12361	961 aa		2.57	□□□□□ -2
SMD1	YGR074W	POM34	Q12445	299 aa		2.57	□□□□□ -2
SMD1	YGR074W	TUF1	P02992	437 aa	Known RBP	2.56	□□□□□ -2
SMD1	YGR074W	SEC12	P11655	471 aa		2.56	□□□□□ -2
SMD1	YGR074W	LAT1	P12695	482 aa	Known RBP	2.56	□□□□□ -2
SMD1	YGR074W	HOP1	P20050	605 aa		2.56	□□□□□ -2
SMD1	YGR074W	PRP4	P20053	465 aa	Known RBP	2.56	□□□□□ -2
SMD1	YGR074W	ATP12	P22135	325 aa		2.56	□□□□□ -2
SMD1	YGR074W	MVD1	P32377	396 aa	Known RBP	2.56	□□□□□ -2
SMD1	YGR074W	MF(ALPHA)2	P32435	120 aa		2.56	□□□□□ -2
SMD1	YGR074W	PEX2	P32800	271 aa		2.56	□□□□□ -2
SMD1	YGR074W	HIS7	P33734	552 aa	Known RBP	2.56	□□□□□ -2

Retrieved 100 of 5,963 RNA–protein pairs in 42.4 ms