RNA–Protein interactions for RNA: YFR001W

LOC1, Nuclear protein involved in asymmetric localization of ASH1 mRNA, yeast

Gene LOC1, Length 615 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
LOC1	YFR001W	RCR2	Q03446	210 aa	Known RBP	4.16	□□□□□ -1.74
LOC1	YFR001W	APM4	Q99186	491 aa		4.16	□□□□□ -1.74
LOC1	YFR001W	RPS17A	P02407	136 aa	Known RBP	4.15	□□□□□ -1.75
LOC1	YFR001W	RPS17B	P14127	136 aa	Known RBP	4.15	□□□□□ -1.75
LOC1	YFR001W	TSR4	P25040	408 aa		4.15	□□□□□ -1.75
LOC1	YFR001W	PIG2	P40187	538 aa		4.15	□□□□□ -1.75
LOC1	YFR001W	SMX3	P54999	86 aa	Predicted RBP	4.15	□□□□□ -1.75
LOC1	YFR001W	VBA4	Q04602	768 aa	Known RBP	4.15	□□□□□ -1.75
LOC1	YFR001W	STP4	Q07351	490 aa		4.15	□□□□□ -1.75
LOC1	YFR001W	IRC10	Q08118	586 aa		4.15	□□□□□ -1.75
LOC1	YFR001W	CLF1	Q12309	687 aa	Predicted RBP	4.15	□□□□□ -1.75
LOC1	YFR001W	THR1	P17423	357 aa	Known RBP	4.14	□□□□□ -1.75
LOC1	YFR001W	PRP28	P23394	588 aa		4.14	□□□□□ -1.75
LOC1	YFR001W	KIN82	P25341	720 aa		4.14	□□□□□ -1.75
LOC1	YFR001W	FEN2	P25621	512 aa	Known RBP	4.14	□□□□□ -1.75
LOC1	YFR001W	EUG1	P32474	517 aa		4.14	□□□□□ -1.75
LOC1	YFR001W	NDC80	P40460	691 aa		4.14	□□□□□ -1.75
LOC1	YFR001W	BUD8	P41698	603 aa		4.14	□□□□□ -1.75
LOC1	YFR001W	DUG1	P43616	481 aa	Known RBP	4.14	□□□□□ -1.75
LOC1	YFR001W	ATG4	P53867	494 aa		4.14	□□□□□ -1.75
LOC1	YFR001W	MRH1	Q12117	320 aa	Predicted RBP	4.14	□□□□□ -1.75
LOC1	YFR001W	GLN4	P13188	809 aa	Known RBP	4.13	□□□□□ -1.75
LOC1	YFR001W	DAL3	P32459	195 aa		4.13	□□□□□ -1.75
LOC1	YFR001W	UBS1	P38290	277 aa		4.13	□□□□□ -1.75
LOC1	YFR001W	COS111	P38308	924 aa		4.13	□□□□□ -1.75
LOC1	YFR001W	DUN1	P39009	513 aa		4.13	□□□□□ -1.75
LOC1	YFR001W	YIL077C	P40508	320 aa		4.13	□□□□□ -1.75
LOC1	YFR001W	PXA1	P41909	870 aa		4.13	□□□□□ -1.75
LOC1	YFR001W	IES1	P43579	692 aa		4.13	□□□□□ -1.75
LOC1	YFR001W	CHS5	Q12114	671 aa	Known RBP	4.13	□□□□□ -1.75
LOC1	YFR001W	USV1	Q12132	391 aa		4.13	□□□□□ -1.75
LOC1	YFR001W	SEC15	P22224	910 aa		4.12	□□□□□ -1.75
LOC1	YFR001W	PRP22	P24384	1145 aa	Known RBP	4.12	□□□□□ -1.75
LOC1	YFR001W	GPP2	P40106	250 aa	Known RBP	4.12	□□□□□ -1.75
LOC1	YFR001W	ARG2	P40360	574 aa		4.12	□□□□□ -1.75
LOC1	YFR001W	VID28	P40547	921 aa		4.12	□□□□□ -1.75
LOC1	YFR001W	STU2	P46675	888 aa		4.12	□□□□□ -1.75
LOC1	YFR001W	RFX1	P48743	811 aa		4.12	□□□□□ -1.75
LOC1	YFR001W	CTR1	P49573	406 aa		4.12	□□□□□ -1.75
LOC1	YFR001W	YFT2	Q06676	274 aa		4.12	□□□□□ -1.75
LOC1	YFR001W	MSL5	Q12186	476 aa	Known RBP RIP-Chip data	4.12	□□□□□ -1.75	not detected
LOC1	YFR001W	TMA17	Q12513	150 aa		4.12	□□□□□ -1.75
LOC1	YFR001W	RPS9B	P05755	195 aa	Known RBP	4.11	□□□□□ -1.75
LOC1	YFR001W	CDC26	P14724	124 aa		4.11	□□□□□ -1.75
LOC1	YFR001W	CDC43	P18898	376 aa		4.11	□□□□□ -1.75
LOC1	YFR001W	KIN3	P22209	435 aa		4.11	□□□□□ -1.75
LOC1	YFR001W	SET3	P36124	751 aa		4.11	□□□□□ -1.75
LOC1	YFR001W	GLG1	P36143	616 aa		4.11	□□□□□ -1.75
LOC1	YFR001W	CCT7	P42943	550 aa	Known RBP	4.11	□□□□□ -1.75
LOC1	YFR001W	QRI1	P43123	477 aa	Known RBP	4.11	□□□□□ -1.75
LOC1	YFR001W	MPS3	P47069	682 aa		4.11	□□□□□ -1.75
LOC1	YFR001W	YGR151C	P53287	111 aa		4.11	□□□□□ -1.75
LOC1	YFR001W	PPN1	Q04119	674 aa		4.11	□□□□□ -1.75
LOC1	YFR001W	TAF3	Q12297	353 aa		4.11	□□□□□ -1.75
LOC1	YFR001W	MSS1	P32559	526 aa	Predicted RBP	4.1	□□□□□ -1.75
LOC1	YFR001W	CTP1	P38152	299 aa		4.1	□□□□□ -1.75
LOC1	YFR001W	YBR071W	P38243	211 aa		4.1	□□□□□ -1.75
LOC1	YFR001W	YHR097C	P38809	366 aa	Known RBP	4.1	□□□□□ -1.75
LOC1	YFR001W	YJL206C	P39529	758 aa		4.1	□□□□□ -1.75
LOC1	YFR001W	KHA1	P40309	873 aa		4.1	□□□□□ -1.75
LOC1	YFR001W	NIT2	P47016	307 aa		4.1	□□□□□ -1.75
LOC1	YFR001W	TAF4	P50105	388 aa		4.1	□□□□□ -1.75
LOC1	YFR001W	SPO1	P53541	631 aa		4.1	□□□□□ -1.75
LOC1	YFR001W	NSE5	Q03718	556 aa		4.1	□□□□□ -1.75
LOC1	YFR001W	TRE2	Q08693	809 aa		4.1	□□□□□ -1.75
LOC1	YFR001W	NOP56	Q12460	504 aa	Known RBP RIP-Chip data	4.1	□□□□□ -1.75	not detected
LOC1	YFR001W	RMP1	Q12530	201 aa		4.1	□□□□□ -1.75
LOC1	YFR001W	ABF1	P14164	731 aa		4.09	□□□□□ -1.75
LOC1	YFR001W	ACO1	P19414	778 aa	Known RBP RIP-Chip data	4.09	□□□□□ -1.75	not detected
LOC1	YFR001W	ATP12	P22135	325 aa		4.09	□□□□□ -1.75
LOC1	YFR001W	AEP2	P22136	580 aa		4.09	□□□□□ -1.75
LOC1	YFR001W	FUB1	P25659	250 aa		4.09	□□□□□ -1.75
LOC1	YFR001W	PRE4	P30657	266 aa		4.09	□□□□□ -1.75
LOC1	YFR001W	MF(ALPHA)2	P32435	120 aa		4.09	□□□□□ -1.75
LOC1	YFR001W	SER1	P33330	395 aa	Known RBP	4.09	□□□□□ -1.75
LOC1	YFR001W	PAF1	P38351	445 aa		4.09	□□□□□ -1.75
LOC1	YFR001W	YJR120W	P47157	116 aa		4.09	□□□□□ -1.75
LOC1	YFR001W	RNR4	P49723	345 aa	Known RBP	4.09	□□□□□ -1.75
LOC1	YFR001W	VPS73	P53142	486 aa	Known RBP	4.09	□□□□□ -1.75
LOC1	YFR001W	SKY1	Q03656	742 aa		4.09	□□□□□ -1.75
LOC1	YFR001W	YDL086W	Q07505	273 aa		4.09	□□□□□ -1.75
LOC1	YFR001W	YPR027C	Q12079	277 aa		4.09	□□□□□ -1.75
LOC1	YFR001W	DMC1	P25453	334 aa		4.08	□□□□□ -1.76
LOC1	YFR001W	DGR2	P32330	852 aa		4.08	□□□□□ -1.76
LOC1	YFR001W	CDS1	P38221	457 aa		4.08	□□□□□ -1.76
LOC1	YFR001W	TDP1	P38319	544 aa		4.08	□□□□□ -1.76
LOC1	YFR001W	BDH2	P39713	417 aa		4.08	□□□□□ -1.76
LOC1	YFR001W	IZH3	Q07959	543 aa		4.08	□□□□□ -1.76
LOC1	YFR001W	SUT2	Q12286	268 aa		4.08	□□□□□ -1.76
LOC1	YFR001W	SSB1	P11484	613 aa	Known RBP	4.07	□□□□□ -1.76
LOC1	YFR001W	GFA1	P14742	717 aa	Known RBP	4.07	□□□□□ -1.76
LOC1	YFR001W	NTH1	P32356	751 aa		4.07	□□□□□ -1.76
LOC1	YFR001W	HXT4	P32467	576 aa		4.07	□□□□□ -1.76
LOC1	YFR001W	GMH1	P36125	273 aa		4.07	□□□□□ -1.76
LOC1	YFR001W	KSP1	P38691	1029 aa	Known RBP	4.07	□□□□□ -1.76
LOC1	YFR001W	CRG1	P38892	291 aa	RIP-Chip data	4.07	□□□□□ -1.76	not detected
LOC1	YFR001W	SSB2	P40150	613 aa	Known RBP	4.07	□□□□□ -1.76
LOC1	YFR001W	TAH11	P47112	604 aa		4.07	□□□□□ -1.76
LOC1	YFR001W	ENP2	P48234	707 aa	Known RBP	4.07	□□□□□ -1.76
LOC1	YFR001W	COG6	P53959	839 aa		4.07	□□□□□ -1.76

Retrieved 100 of 5,963 RNA–protein pairs in 127.4 ms