RNA–Protein interactions for RNA: YER139C

RTR1, Transcript of CTD phosphatase, yeastyeast

Gene RTR1, Length 681 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
RTR1YER139C UFO1Q04511 668 aa3.71□□□□□ -1.82
RTR1YER139C LEU2P04173 364 aaPredicted RBP3.7□□□□□ -1.82
RTR1YER139C BEM3P32873 1128 aa3.7□□□□□ -1.82
RTR1YER139C YGL117WP53133 265 aa3.7□□□□□ -1.82
RTR1YER139C SNU71P53207 620 aaKnown RBP3.7□□□□□ -1.82
RTR1YER139C ATP23P53722 227 aa3.7□□□□□ -1.82
RTR1YER139C IRC3Q06683 689 aa3.7□□□□□ -1.82
RTR1YER139C GAL11P19659 1081 aa3.69□□□□□ -1.82
RTR1YER139C NTH1P32356 751 aa3.69□□□□□ -1.82
RTR1YER139C STO1P34160 861 aaKnown RBP3.69□□□□□ -1.82
RTR1YER139C ELF1P36053 145 aa3.69□□□□□ -1.82
RTR1YER139C SNP1Q00916 300 aaPredicted RBP3.69□□□□□ -1.82
RTR1YER139C VPS36Q06696 566 aa3.69□□□□□ -1.82
RTR1YER139C APN2P38207 520 aa3.68□□□□□ -1.82
RTR1YER139C GDH3P39708 457 aa3.68□□□□□ -1.82
RTR1YER139C SET2P46995 733 aaKnown RBP3.68□□□□□ -1.82
RTR1YER139C GIS2P53849 153 aaKnown RBP RIP-Chip data3.68□□□□□ -1.82not detected
RTR1YER139C PAM1P37304 830 aaKnown RBP3.67□□□□□ -1.82
RTR1YER139C HSL7P38274 827 aa3.67□□□□□ -1.82
RTR1YER139C SCW4P53334 386 aaKnown RBP3.67□□□□□ -1.82
RTR1YER139C CPR8P53728 308 aa3.67□□□□□ -1.82
RTR1YER139C BRE5P53741 515 aaKnown RBP3.67□□□□□ -1.82
RTR1YER139C YFT2Q06676 274 aa3.67□□□□□ -1.82
RTR1YER139C PRS5Q12265 496 aaKnown RBP3.67□□□□□ -1.82
RTR1YER139C POM34Q12445 299 aa3.67□□□□□ -1.82
RTR1YER139C ERG20P08524 352 aaKnown RBP3.66□□□□□ -1.82
RTR1YER139C TUP1P16649 713 aa3.66□□□□□ -1.82
RTR1YER139C EUG1P32474 517 aa3.66□□□□□ -1.82
RTR1YER139C COS111P38308 924 aa3.66□□□□□ -1.82
RTR1YER139C CAF16P43569 289 aa3.66□□□□□ -1.82
RTR1YER139C MAL11P53048 616 aa3.66□□□□□ -1.82
RTR1YER139C NHX1Q04121 633 aa3.66□□□□□ -1.82
RTR1YER139C IZH3Q07959 543 aa3.66□□□□□ -1.82
RTR1YER139C CDC9P04819 755 aa3.65□□□□□ -1.83
RTR1YER139C ERG13P54839 491 aaKnown RBP3.65□□□□□ -1.83
RTR1YER139C TRS23Q03784 219 aa3.65□□□□□ -1.83
RTR1YER139C ISA1Q07821 250 aaPredicted RBP3.65□□□□□ -1.83
RTR1YER139C PMA2P19657 947 aa3.64□□□□□ -1.83
RTR1YER139C AKL1P38080 1108 aaKnown RBP3.64□□□□□ -1.83
RTR1YER139C NMD5P46970 1048 aa3.64□□□□□ -1.83
RTR1YER139C YJL049WP47048 450 aa3.64□□□□□ -1.83
RTR1YER139C NEW1Q08972 1196 aaKnown RBP3.64□□□□□ -1.83
RTR1YER139C CIT2P08679 460 aa3.63□□□□□ -1.83
RTR1YER139C PXL1P36166 706 aa3.63□□□□□ -1.83
RTR1YER139C RIM4P38741 713 aa3.63□□□□□ -1.83
RTR1YER139C TAF7Q05021 590 aa3.63□□□□□ -1.83
RTR1YER139C SEC15P22224 910 aa3.62□□□□□ -1.83
RTR1YER139C ASK1P35734 292 aa3.62□□□□□ -1.83
RTR1YER139C SSZ1P38788 538 aaKnown RBP3.62□□□□□ -1.83
RTR1YER139C PCI8P40512 444 aa3.62□□□□□ -1.83
RTR1YER139C MNT3P40549 630 aa3.62□□□□□ -1.83
RTR1YER139C MAF1P41910 395 aa3.62□□□□□ -1.83
RTR1YER139C BIT61P47041 543 aa3.62□□□□□ -1.83
RTR1YER139C RSC9Q03124 581 aa3.62□□□□□ -1.83
RTR1YER139C RPL7AP05737 244 aaKnown RBP3.61□□□□□ -1.83
RTR1YER139C HEM1P09950 548 aaPredicted RBP3.61□□□□□ -1.83
RTR1YER139C TSR4P25040 408 aa3.61□□□□□ -1.83
RTR1YER139C HOG1P32485 435 aa3.61□□□□□ -1.83
RTR1YER139C YPT7P32939 208 aa3.61□□□□□ -1.83
RTR1YER139C MNN4P36044 1178 aa3.61□□□□□ -1.83
RTR1YER139C SNO3P43544 222 aa3.61□□□□□ -1.83
RTR1YER139C DAK1P54838 584 aaKnown RBP3.61□□□□□ -1.83
RTR1YER139C RPL7BQ12213 244 aaKnown RBP3.61□□□□□ -1.83
RTR1YER139C KIN82P25341 720 aa3.6□□□□□ -1.83
RTR1YER139C MRPL9P31334 269 aa3.6□□□□□ -1.83
RTR1YER139C SPC97P38863 823 aa3.6□□□□□ -1.83
RTR1YER139C ZPS1Q12512 249 aa3.6□□□□□ -1.83
RTR1YER139C MDM12Q92328 271 aa3.6□□□□□ -1.83
RTR1YER139C RPS9BP05755 195 aaKnown RBP3.59□□□□□ -1.83
RTR1YER139C AQY1P0CD91 305 aa3.59□□□□□ -1.83
RTR1YER139C ERR1P0CX10 437 aa3.59□□□□□ -1.83
RTR1YER139C ERR2P0CX11 437 aa3.59□□□□□ -1.83
RTR1YER139C YHR202WP38887 602 aa3.59□□□□□ -1.83
RTR1YER139C CCT4P39078 528 aaKnown RBP3.59□□□□□ -1.83
RTR1YER139C JHD1P40034 492 aa3.59□□□□□ -1.83
RTR1YER139C YJR039WP47107 1121 aa3.59□□□□□ -1.83
RTR1YER139C LSC1P53598 329 aaKnown RBP3.59□□□□□ -1.83
RTR1YER139C GCS1P35197 352 aa3.58□□□□□ -1.84
RTR1YER139C ATG36P46983 293 aa3.58□□□□□ -1.84
RTR1YER139C CPA2P03965 1118 aaKnown RBP3.57□□□□□ -1.84
RTR1YER139C SRD1P09007 221 aa3.57□□□□□ -1.84
RTR1YER139C FRS1P15624 595 aaKnown RBP3.57□□□□□ -1.84
RTR1YER139C NOP1P15646 327 aaKnown RBP3.57□□□□□ -1.84
RTR1YER139C MEF1P25039 761 aa3.57□□□□□ -1.84
RTR1YER139C DOT6P40059 670 aaKnown RBP3.57□□□□□ -1.84
RTR1YER139C YJL043WP47053 257 aa3.57□□□□□ -1.84
RTR1YER139C VHS3Q08438 674 aa3.57□□□□□ -1.84
RTR1YER139C DCS2Q12123 353 aa3.57□□□□□ -1.84
RTR1YER139C SEC3P33332 1336 aaKnown RBP3.56□□□□□ -1.84
RTR1YER139C PET127P32606 800 aa3.56□□□□□ -1.84
RTR1YER139C RPC34P32910 317 aa3.56□□□□□ -1.84
RTR1YER139C PIH1P38768 344 aa3.56□□□□□ -1.84
RTR1YER139C DSS1P39112 969 aa3.56□□□□□ -1.84
RTR1YER139C NUG1P40010 520 aaKnown RBP3.56□□□□□ -1.84
RTR1YER139C BST1P43571 1029 aa3.56□□□□□ -1.84
RTR1YER139C YIP4P53093 235 aa3.56□□□□□ -1.84
RTR1YER139C RCR2Q03446 210 aaKnown RBP3.56□□□□□ -1.84
RTR1YER139C YAP1P19880 650 aaKnown RBP3.55□□□□□ -1.84
RTR1YER139C GSY1P23337 708 aa3.55□□□□□ -1.84
RTR1YER139C APD1P38281 316 aa3.55□□□□□ -1.84
Retrieved 100 of 5,963 RNA–protein pairs in 48.5 ms