RNA–Protein interactions for RNA: YDR439W

LRS4, Transcript of Nucleolar protein that forms a complex with Csm1p, yeast

Gene LRS4, Length 1,044 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
LRS4	YDR439W	UBX4	P54730	416 aa		4.24	□□□□□ -1.73
LRS4	YDR439W	ATG16	Q03818	150 aa		4.24	□□□□□ -1.73
LRS4	YDR439W	YDR514C	Q04408	483 aa		4.24	□□□□□ -1.73
LRS4	YDR439W	GAD1	Q04792	585 aa		4.24	□□□□□ -1.73
LRS4	YDR439W	YDL121C	Q07541	149 aa		4.24	□□□□□ -1.73
LRS4	YDR439W	YBR182C-A	Q8TGU6	64 aa		4.24	□□□□□ -1.73
LRS4	YDR439W	PYC1	P11154	1178 aa	Known RBP	4.23	□□□□□ -1.73
LRS4	YDR439W	PGI1	P12709	554 aa	Known RBP	4.23	□□□□□ -1.73
LRS4	YDR439W	AEP2	P22136	580 aa		4.23	□□□□□ -1.73
LRS4	YDR439W	SER1	P33330	395 aa	Known RBP	4.23	□□□□□ -1.73
LRS4	YDR439W	SET5	P38890	526 aa	Known RBP	4.23	□□□□□ -1.73
LRS4	YDR439W	CCT3	P39077	534 aa	Known RBP	4.23	□□□□□ -1.73
LRS4	YDR439W	BDH2	P39713	417 aa		4.23	□□□□□ -1.73
LRS4	YDR439W	ARG2	P40360	574 aa		4.23	□□□□□ -1.73
LRS4	YDR439W	RSC8	P43609	557 aa	Known RBP	4.23	□□□□□ -1.73
LRS4	YDR439W	MTR3	P48240	250 aa	Predicted RBP	4.23	□□□□□ -1.73
LRS4	YDR439W	CTR1	P49573	406 aa		4.23	□□□□□ -1.73
LRS4	YDR439W	UBC9	P50623	157 aa	Predicted RBP	4.23	□□□□□ -1.73
LRS4	YDR439W	YGR021W	P53212	290 aa		4.23	□□□□□ -1.73
LRS4	YDR439W	REH1	Q06709	432 aa		4.23	□□□□□ -1.73
LRS4	YDR439W	RPS21A	P0C0V8	87 aa	Known RBP	4.22	□□□□□ -1.73
LRS4	YDR439W	TRZ1	P36159	838 aa	Predicted RBP	4.22	□□□□□ -1.73
LRS4	YDR439W	SPC105	P53148	917 aa		4.22	□□□□□ -1.73
LRS4	YDR439W	CEF1	Q03654	590 aa	Predicted RBP	4.22	□□□□□ -1.73
LRS4	YDR439W	NHX1	Q04121	633 aa		4.22	□□□□□ -1.73
LRS4	YDR439W	RPS21B	Q3E754	87 aa	Known RBP	4.22	□□□□□ -1.73
LRS4	YDR439W	YKL033W-A	Q86ZR7	236 aa		4.22	□□□□□ -1.73
LRS4	YDR439W	YEF3	P16521	1044 aa	Known RBP	4.21	□□□□□ -1.74
LRS4	YDR439W	APA1	P16550	321 aa	Known RBP	4.21	□□□□□ -1.74
LRS4	YDR439W	UBS1	P38290	277 aa		4.21	□□□□□ -1.74
LRS4	YDR439W	RET2	P43621	546 aa		4.21	□□□□□ -1.74
LRS4	YDR439W	ALY2	P47029	1046 aa		4.21	□□□□□ -1.74
LRS4	YDR439W	YGR153W	P48238	217 aa		4.21	□□□□□ -1.74
LRS4	YDR439W	HFI1	Q12060	488 aa		4.21	□□□□□ -1.74
LRS4	YDR439W	DCS2	Q12123	353 aa		4.21	□□□□□ -1.74
LRS4	YDR439W	NYV1	Q12255	253 aa		4.21	□□□□□ -1.74
LRS4	YDR439W	APM4	Q99186	491 aa		4.21	□□□□□ -1.74
LRS4	YDR439W	VPS34	P22543	875 aa		4.2	□□□□□ -1.74
LRS4	YDR439W	NIC96	P34077	839 aa		4.2	□□□□□ -1.74
LRS4	YDR439W	OAF3	P36023	863 aa		4.2	□□□□□ -1.74
LRS4	YDR439W	YKR051W	P36142	418 aa		4.2	□□□□□ -1.74
LRS4	YDR439W	FAT1	P38225	669 aa		4.2	□□□□□ -1.74
LRS4	YDR439W	BIT2	P38346	545 aa		4.2	□□□□□ -1.74
LRS4	YDR439W	NAB3	P38996	802 aa	Known RBP RIP-Chip data	4.2	□□□□□ -1.74	not detected
LRS4	YDR439W	PAC2	P39937	518 aa		4.2	□□□□□ -1.74
LRS4	YDR439W	PAN2	P53010	1115 aa	Predicted RBP	4.2	□□□□□ -1.74
LRS4	YDR439W	ZIP2	P53061	704 aa		4.2	□□□□□ -1.74
LRS4	YDR439W	PHM6	Q05637	104 aa		4.2	□□□□□ -1.74
LRS4	YDR439W	NKP1	Q12493	238 aa		4.2	□□□□□ -1.74
LRS4	YDR439W	YLR149C	Q99296	730 aa		4.2	□□□□□ -1.74
LRS4	YDR439W	Q0142	Q9ZZW4	58 aa		4.2	□□□□□ -1.74
LRS4	YDR439W	HOM2	P13663	365 aa	Known RBP	4.19	□□□□□ -1.74
LRS4	YDR439W	KCC4	P25389	1037 aa		4.19	□□□□□ -1.74
LRS4	YDR439W	DID4	P36108	232 aa		4.19	□□□□□ -1.74
LRS4	YDR439W	HSL7	P38274	827 aa		4.19	□□□□□ -1.74
LRS4	YDR439W	RLP7	P40693	322 aa	Known RBP	4.19	□□□□□ -1.74
LRS4	YDR439W	ATG4	P53867	494 aa		4.19	□□□□□ -1.74
LRS4	YDR439W	ARP4	P80428	489 aa		4.19	□□□□□ -1.74
LRS4	YDR439W	RIM13	Q03792	727 aa		4.19	□□□□□ -1.74
LRS4	YDR439W	SEG1	Q04279	960 aa		4.19	□□□□□ -1.74
LRS4	YDR439W	RRP6	Q12149	733 aa	Known RBP	4.19	□□□□□ -1.74
LRS4	YDR439W	RMP1	Q12530	201 aa		4.19	□□□□□ -1.74
LRS4	YDR439W	COX11	P19516	300 aa	Known RBP	4.18	□□□□□ -1.74
LRS4	YDR439W	ATP12	P22135	325 aa		4.18	□□□□□ -1.74
LRS4	YDR439W	PTP2	P29461	750 aa		4.18	□□□□□ -1.74
LRS4	YDR439W	TDA3	P38758	523 aa		4.18	□□□□□ -1.74
LRS4	YDR439W	SFB3	P38810	929 aa		4.18	□□□□□ -1.74
LRS4	YDR439W	BNA2	P47125	453 aa		4.18	□□□□□ -1.74
LRS4	YDR439W	YBP2	P53169	641 aa		4.18	□□□□□ -1.74
LRS4	YDR439W	SKY1	Q03656	742 aa		4.18	□□□□□ -1.74
LRS4	YDR439W	VMS1	Q04311	632 aa	Known RBP	4.18	□□□□□ -1.74
LRS4	YDR439W	ECM38	Q05902	660 aa	Predicted RBP	4.18	□□□□□ -1.74
LRS4	YDR439W	MLC2	Q06580	163 aa		4.18	□□□□□ -1.74
LRS4	YDR439W	DIF1	O13577	133 aa		4.17	□□□□□ -1.74
LRS4	YDR439W	MSS18	P08593	268 aa		4.17	□□□□□ -1.74
LRS4	YDR439W	RPA135	P22138	1203 aa	Known RBP	4.17	□□□□□ -1.74
LRS4	YDR439W	MVD1	P32377	396 aa	Known RBP	4.17	□□□□□ -1.74
LRS4	YDR439W	MNN4	P36044	1178 aa		4.17	□□□□□ -1.74
LRS4	YDR439W	YKR018C	P36114	725 aa		4.17	□□□□□ -1.74
LRS4	YDR439W	EXO84	P38261	753 aa		4.17	□□□□□ -1.74
LRS4	YDR439W	YHL041W	P38730	149 aa		4.17	□□□□□ -1.74
LRS4	YDR439W	RPN10	P38886	268 aa	Known RBP	4.17	□□□□□ -1.74
LRS4	YDR439W	SHR5	P41912	237 aa		4.17	□□□□□ -1.74
LRS4	YDR439W	MRK1	P50873	501 aa		4.17	□□□□□ -1.74
LRS4	YDR439W	MTL1	P53214	551 aa		4.17	□□□□□ -1.74
LRS4	YDR439W	CEG1	Q01159	459 aa	Predicted RBP	4.17	□□□□□ -1.74
LRS4	YDR439W	CTK1	Q03957	528 aa	Known RBP	4.17	□□□□□ -1.74
LRS4	YDR439W	FMO1	P38866	432 aa		4.16	□□□□□ -1.74
LRS4	YDR439W	BEM4	P39011	633 aa		4.16	□□□□□ -1.74
LRS4	YDR439W	DOT6	P40059	670 aa	Known RBP	4.16	□□□□□ -1.74
LRS4	YDR439W	GAT1	P43574	510 aa		4.16	□□□□□ -1.74
LRS4	YDR439W	PRP31	P49704	494 aa	Predicted RBP	4.16	□□□□□ -1.74
LRS4	YDR439W	FHN1	P53279	174 aa		4.16	□□□□□ -1.74
LRS4	YDR439W	LEE1	Q02799	301 aa	Known RBP	4.16	□□□□□ -1.74
LRS4	YDR439W	BRE1	Q07457	700 aa	Known RBP	4.16	□□□□□ -1.74
LRS4	YDR439W	YPR027C	Q12079	277 aa		4.16	□□□□□ -1.74
LRS4	YDR439W	SWI6	P09959	803 aa		4.15	□□□□□ -1.75
LRS4	YDR439W	MAL31	P38156	614 aa		4.15	□□□□□ -1.75
LRS4	YDR439W	LYS9	P38999	446 aa		4.15	□□□□□ -1.75
LRS4	YDR439W	NUP60	P39705	539 aa		4.15	□□□□□ -1.75

Retrieved 100 of 5,963 RNA–protein pairs in 66.8 ms