RNA–Protein interactions for RNA: YNL223W

ATG4, Transcript of Conserved cysteine protease required for autophagy, yeastyeast

Gene ATG4, Length 1,485 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
ATG4YNL223W ISM1P48526 1002 aa6.29□□□□□ -1.4
ATG4YNL223W EEB1Q02891 456 aa6.29□□□□□ -1.4
ATG4YNL223W VPS72Q03388 795 aa6.29□□□□□ -1.4
ATG4YNL223W ATG16Q03818 150 aa6.29□□□□□ -1.4
ATG4YNL223W YKL068W-AQ3E826 78 aa6.29□□□□□ -1.4
ATG4YNL223W CDC8P00572 216 aa6.28□□□□□ -1.4
ATG4YNL223W ADE3P07245 946 aaKnown RBP6.28□□□□□ -1.4
ATG4YNL223W EST1P17214 699 aaPredicted RBP6.28□□□□□ -1.4
ATG4YNL223W VMA4P22203 233 aaKnown RBP6.28□□□□□ -1.4
ATG4YNL223W CAP1P28495 268 aaKnown RBP6.28□□□□□ -1.4
ATG4YNL223W SEC61P32915 480 aa6.28□□□□□ -1.4
ATG4YNL223W YAP1801P38856 637 aa6.28□□□□□ -1.4
ATG4YNL223W LAM5P43560 674 aa6.28□□□□□ -1.4
ATG4YNL223W AZR1P50080 613 aa6.28□□□□□ -1.4
ATG4YNL223W ALT1P52893 592 aa6.28□□□□□ -1.4
ATG4YNL223W RIM8P53179 542 aa6.28□□□□□ -1.4
ATG4YNL223W ALG11P53954 548 aaKnown RBP6.28□□□□□ -1.4
ATG4YNL223W ULP1Q02724 621 aa6.28□□□□□ -1.4
ATG4YNL223W YMR187CQ03236 431 aa6.28□□□□□ -1.4
ATG4YNL223W SNU56Q03782 492 aaKnown RBP6.28□□□□□ -1.4
ATG4YNL223W GYL1Q04322 720 aa6.28□□□□□ -1.4
ATG4YNL223W TDA9Q04545 1251 aa6.28□□□□□ -1.4
ATG4YNL223W ERV41Q04651 352 aa6.28□□□□□ -1.4
ATG4YNL223W YLR455WQ06188 304 aa6.28□□□□□ -1.4
ATG4YNL223W PUF3Q07807 879 aaKnown RBP RIP-Chip data6.28□□□□□ -1.4not detected
ATG4YNL223W AIM41Q12032 185 aa6.28□□□□□ -1.4
ATG4YNL223W GYP6P32806 458 aa6.28□□□□□ -1.4
ATG4YNL223W NFU1P32860 256 aa6.28□□□□□ -1.4
ATG4YNL223W YBL055CP34220 418 aaPredicted RBP6.28□□□□□ -1.4
ATG4YNL223W UBX7P38349 436 aa6.28□□□□□ -1.4
ATG4YNL223W MMS21P38632 267 aa6.28□□□□□ -1.4
ATG4YNL223W TVP23P38962 199 aa6.28□□□□□ -1.4
ATG4YNL223W CIN4P39110 191 aa6.28□□□□□ -1.4
ATG4YNL223W ALD5P40047 520 aaKnown RBP6.28□□□□□ -1.4
ATG4YNL223W INP51P40559 946 aaKnown RBP6.28□□□□□ -1.4
ATG4YNL223W DAN4P47179 1161 aa6.28□□□□□ -1.4
ATG4YNL223W YGL036WP53185 909 aaPredicted RBP6.28□□□□□ -1.4
ATG4YNL223W GPD1Q00055 391 aaKnown RBP6.28□□□□□ -1.4
ATG4YNL223W MTG1Q03151 367 aaPredicted RBP6.28□□□□□ -1.4
ATG4YNL223W CWC21Q03375 135 aaKnown RBP6.28□□□□□ -1.4
ATG4YNL223W CDD1Q06549 142 aa6.28□□□□□ -1.4
ATG4YNL223W APL5Q08951 932 aaKnown RBP6.28□□□□□ -1.4
ATG4YNL223W YPR027CQ12079 277 aa6.28□□□□□ -1.4
ATG4YNL223W MAM3Q12296 706 aa6.28□□□□□ -1.4
ATG4YNL223W PCD1Q12524 340 aa6.28□□□□□ -1.4
ATG4YNL223W CTF3Q12748 733 aa6.28□□□□□ -1.4
ATG4YNL223W CHS1P08004 1131 aa6.27□□□□□ -1.41
ATG4YNL223W EFB1P32471 206 aaKnown RBP6.27□□□□□ -1.41
ATG4YNL223W ABD1P32783 436 aaPredicted RBP6.27□□□□□ -1.41
ATG4YNL223W MRP4P32902 394 aa6.27□□□□□ -1.41
ATG4YNL223W MUD2P36084 527 aaKnown RBP6.27□□□□□ -1.41
ATG4YNL223W LAS1P36146 502 aaPredicted RBP6.27□□□□□ -1.41
ATG4YNL223W DRE2P36152 348 aa6.27□□□□□ -1.41
ATG4YNL223W YMC2P38087 329 aa6.27□□□□□ -1.41
ATG4YNL223W CBR1P38626 284 aaKnown RBP6.27□□□□□ -1.41
ATG4YNL223W PMC1P38929 1173 aaPredicted RBP6.27□□□□□ -1.41
ATG4YNL223W END3P39013 349 aa6.27□□□□□ -1.41
ATG4YNL223W YEL023CP39992 682 aa6.27□□□□□ -1.41
ATG4YNL223W MVP1P40959 511 aaKnown RBP6.27□□□□□ -1.41
ATG4YNL223W YNL320WP42840 284 aa6.27□□□□□ -1.41
ATG4YNL223W YNL134CP53912 376 aaKnown RBP6.27□□□□□ -1.41
ATG4YNL223W RIO1Q12196 484 aaKnown RBP6.27□□□□□ -1.41
ATG4YNL223W PUS1Q12211 544 aaKnown RBP6.27□□□□□ -1.41
ATG4YNL223W PRP9P19736 530 aaKnown RBP6.26□□□□□ -1.41
ATG4YNL223W SFL1P20134 766 aa6.26□□□□□ -1.41
ATG4YNL223W BUD2P33314 1104 aa6.26□□□□□ -1.41
ATG4YNL223W NOP4P37838 685 aaKnown RBP6.26□□□□□ -1.41
ATG4YNL223W OLA1P38219 394 aaKnown RBP6.26□□□□□ -1.41
ATG4YNL223W QNS1P38795 714 aaKnown RBP6.26□□□□□ -1.41
ATG4YNL223W SAK1P38990 1142 aa6.26□□□□□ -1.41
ATG4YNL223W TMN3P40071 706 aa6.26□□□□□ -1.41
ATG4YNL223W NMD5P46970 1048 aa6.26□□□□□ -1.41
ATG4YNL223W GCV2P49095 1034 aa6.26□□□□□ -1.41
ATG4YNL223W MND1P53102 219 aa6.26□□□□□ -1.41
ATG4YNL223W HOP2P53187 214 aa6.26□□□□□ -1.41
ATG4YNL223W YGR130CP53278 816 aa6.26□□□□□ -1.41
ATG4YNL223W VPS62P53285 467 aa6.26□□□□□ -1.41
ATG4YNL223W UFO1Q04511 668 aa6.26□□□□□ -1.41
ATG4YNL223W YOR059CQ08448 450 aaKnown RBP6.26□□□□□ -1.41
ATG4YNL223W KAR3P17119 729 aa6.25□□□□□ -1.41
ATG4YNL223W VBA3P25594 458 aa6.25□□□□□ -1.41
ATG4YNL223W CYS3P31373 394 aaKnown RBP6.25□□□□□ -1.41
ATG4YNL223W GCD6P32501 712 aaKnown RBP6.25□□□□□ -1.41
ATG4YNL223W ECM32P32644 1121 aaKnown RBP6.25□□□□□ -1.41
ATG4YNL223W UBC6P33296 250 aaPredicted RBP6.25□□□□□ -1.41
ATG4YNL223W SEG2P34250 1132 aa6.25□□□□□ -1.41
ATG4YNL223W VBA5P36172 582 aa6.25□□□□□ -1.41
ATG4YNL223W AGP2P38090 596 aa6.25□□□□□ -1.41
ATG4YNL223W SPP381P38282 291 aaPredicted RBP6.25□□□□□ -1.41
ATG4YNL223W YHL026CP38740 315 aa6.25□□□□□ -1.41
ATG4YNL223W GEM1P39722 662 aa6.25□□□□□ -1.41
ATG4YNL223W SNZ3P43545 298 aa6.25□□□□□ -1.41
ATG4YNL223W ASG7P46993 209 aa6.25□□□□□ -1.41
ATG4YNL223W STB4P50104 949 aa6.25□□□□□ -1.41
ATG4YNL223W NOG2P53742 486 aaKnown RBP6.25□□□□□ -1.41
ATG4YNL223W SNZ2P53824 298 aa6.25□□□□□ -1.41
ATG4YNL223W MZM1Q03429 123 aaPredicted RBP6.25□□□□□ -1.41
ATG4YNL223W TRE1Q08919 783 aa6.25□□□□□ -1.41
ATG4YNL223W YOR022CQ12204 715 aa6.25□□□□□ -1.41
ATG4YNL223W PMS1P14242 873 aa6.24□□□□□ -1.41
Retrieved 100 of 5,963 RNA–protein pairs in 218.1 ms