RNA–Protein interactions for RNA: YNL197C

WHI3, Transcript of RNA binding protein that sequesters CLN3 mRNA in cytoplasmic foci, yeast

Gene WHI3, Length 1,986 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
WHI3	YNL197C	RPT2	P40327	437 aa	Known RBP	4.14	□□□□□ -1.75
WHI3	YNL197C	PUS4	P48567	403 aa	Known RBP	4.14	□□□□□ -1.75
WHI3	YNL197C	MRPL22	P53881	309 aa		4.14	□□□□□ -1.75
WHI3	YNL197C	GPD1	Q00055	391 aa	Known RBP	4.14	□□□□□ -1.75
WHI3	YNL197C	ECM16	Q04217	1267 aa	Known RBP	4.14	□□□□□ -1.75
WHI3	YNL197C	BRE1	Q07457	700 aa	Known RBP	4.14	□□□□□ -1.75
WHI3	YNL197C	GPB1	Q08886	897 aa		4.14	□□□□□ -1.75
WHI3	YNL197C	KCS1	Q12494	1050 aa		4.14	□□□□□ -1.75
WHI3	YNL197C	GLT1	Q12680	2145 aa	Known RBP	4.13	□□□□□ -1.75
WHI3	YNL197C	RPS17A	P02407	136 aa	Known RBP	4.13	□□□□□ -1.75
WHI3	YNL197C	RPS17B	P14127	136 aa	Known RBP	4.13	□□□□□ -1.75
WHI3	YNL197C	TSA1	P34760	196 aa	Known RBP	4.13	□□□□□ -1.75
WHI3	YNL197C	INP52	P50942	1183 aa		4.13	□□□□□ -1.75
WHI3	YNL197C	ARG5,6	Q01217	863 aa		4.13	□□□□□ -1.75
WHI3	YNL197C	GCN5	Q03330	439 aa		4.13	□□□□□ -1.75
WHI3	YNL197C	NGL1	Q08213	363 aa	Known RBP	4.13	□□□□□ -1.75
WHI3	YNL197C	YOL114C	Q12322	202 aa		4.13	□□□□□ -1.75
WHI3	YNL197C	YLR415C	O13578	112 aa		4.13	□□□□□ -1.75
WHI3	YNL197C	ACO1	P19414	778 aa	Known RBP RIP-Chip data	4.13	□□□□□ -1.75	not detected
WHI3	YNL197C	MAC1	P35192	417 aa		4.13	□□□□□ -1.75
WHI3	YNL197C	APN2	P38207	520 aa		4.13	□□□□□ -1.75
WHI3	YNL197C	SRP68	P38687	599 aa	Known RBP	4.13	□□□□□ -1.75
WHI3	YNL197C	YHR112C	P38716	378 aa		4.13	□□□□□ -1.75
WHI3	YNL197C	PRP31	P49704	494 aa	Predicted RBP	4.13	□□□□□ -1.75
WHI3	YNL197C	MOT3	P54785	490 aa	Known RBP	4.13	□□□□□ -1.75
WHI3	YNL197C	ORC4	P54791	529 aa		4.13	□□□□□ -1.75
WHI3	YNL197C	VMS1	Q04311	632 aa	Known RBP	4.13	□□□□□ -1.75
WHI3	YNL197C	CIA1	Q05583	330 aa		4.13	□□□□□ -1.75
WHI3	YNL197C	YDL121C	Q07541	149 aa		4.13	□□□□□ -1.75
WHI3	YNL197C	CWC2	Q12046	339 aa	Predicted RBP	4.13	□□□□□ -1.75
WHI3	YNL197C	DFG16	Q99234	619 aa		4.13	□□□□□ -1.75
WHI3	YNL197C	PFK1	P16861	987 aa	Known RBP	4.12	□□□□□ -1.75
WHI3	YNL197C	CDC20	P26309	610 aa		4.12	□□□□□ -1.75
WHI3	YNL197C	YKR075C	P36155	307 aa		4.12	□□□□□ -1.75
WHI3	YNL197C	MTD1	Q02046	320 aa	Known RBP	4.12	□□□□□ -1.75
WHI3	YNL197C	YMR210W	Q03649	449 aa		4.12	□□□□□ -1.75
WHI3	YNL197C	SWM1	Q12379	170 aa		4.12	□□□□□ -1.75
WHI3	YNL197C	LAS17	Q12446	633 aa		4.12	□□□□□ -1.75
WHI3	YNL197C	RPP2A	P05319	106 aa	Known RBP	4.11	□□□□□ -1.75
WHI3	YNL197C	APL2	P36000	726 aa	Predicted RBP	4.11	□□□□□ -1.75
WHI3	YNL197C	POL12	P38121	705 aa	Predicted RBP	4.11	□□□□□ -1.75
WHI3	YNL197C	RIM4	P38741	713 aa		4.11	□□□□□ -1.75
WHI3	YNL197C	ERG5	P54781	538 aa		4.11	□□□□□ -1.75
WHI3	YNL197C	HLR1	Q04429	423 aa		4.11	□□□□□ -1.75
WHI3	YNL197C	ACK1	Q07622	623 aa	Predicted RBP	4.11	□□□□□ -1.75
WHI3	YNL197C	ISA1	Q07821	250 aa	Predicted RBP	4.11	□□□□□ -1.75
WHI3	YNL197C	PYC1	P11154	1178 aa	Known RBP	4.11	□□□□□ -1.75
WHI3	YNL197C	ERG6	P25087	383 aa	Known RBP	4.11	□□□□□ -1.75
WHI3	YNL197C	DBF20	P32328	564 aa		4.11	□□□□□ -1.75
WHI3	YNL197C	EXO84	P38261	753 aa		4.11	□□□□□ -1.75
WHI3	YNL197C	ECM1	P39715	212 aa		4.11	□□□□□ -1.75
WHI3	YNL197C	YNL195C	P40168	261 aa		4.11	□□□□□ -1.75
WHI3	YNL197C	YIL092W	P40497	633 aa		4.11	□□□□□ -1.75
WHI3	YNL197C	BFA1	P47113	574 aa		4.11	□□□□□ -1.75
WHI3	YNL197C	PKH1	Q03407	766 aa		4.11	□□□□□ -1.75
WHI3	YNL197C	MCM21	Q06675	368 aa		4.11	□□□□□ -1.75
WHI3	YNL197C	VPS36	Q06696	566 aa		4.11	□□□□□ -1.75
WHI3	YNL197C	RXT3	Q07458	294 aa		4.11	□□□□□ -1.75
WHI3	YNL197C	RTK1	Q12100	620 aa	Predicted RBP	4.11	□□□□□ -1.75
WHI3	YNL197C	PET127	P32606	800 aa		4.1	□□□□□ -1.75
WHI3	YNL197C	MTC7	P32633	139 aa		4.1	□□□□□ -1.75
WHI3	YNL197C	CTF13	P35203	478 aa		4.1	□□□□□ -1.75
WHI3	YNL197C	RPP1	P38786	293 aa		4.1	□□□□□ -1.75
WHI3	YNL197C	PLB1	P39105	664 aa		4.1	□□□□□ -1.75
WHI3	YNL197C	ACA1	P39970	489 aa		4.1	□□□□□ -1.75
WHI3	YNL197C	MAD2	P40958	196 aa		4.1	□□□□□ -1.75
WHI3	YNL197C	BUD8	P41698	603 aa		4.1	□□□□□ -1.75
WHI3	YNL197C	YLR224W	Q05947	369 aa		4.1	□□□□□ -1.75
WHI3	YNL197C	PEX19	Q07418	342 aa		4.1	□□□□□ -1.75
WHI3	YNL197C	NUR1	Q12066	484 aa		4.1	□□□□□ -1.75
WHI3	YNL197C	YEL076C-A	P0CX16	216 aa		4.09	□□□□□ -1.75
WHI3	YNL197C	YLR464W	P0CX17	216 aa		4.09	□□□□□ -1.75
WHI3	YNL197C	FRS1	P15624	595 aa	Known RBP	4.09	□□□□□ -1.75
WHI3	YNL197C	PHO3	P24031	467 aa		4.09	□□□□□ -1.75
WHI3	YNL197C	KAR4	P25583	335 aa		4.09	□□□□□ -1.75
WHI3	YNL197C	PET309	P32522	965 aa	Predicted RBP	4.09	□□□□□ -1.75
WHI3	YNL197C	LIP5	P32875	414 aa		4.09	□□□□□ -1.75
WHI3	YNL197C	YBR259W	P38338	688 aa		4.09	□□□□□ -1.75
WHI3	YNL197C	STL1	P39932	569 aa		4.09	□□□□□ -1.75
WHI3	YNL197C	YEL076C	P39971	216 aa		4.09	□□□□□ -1.75
WHI3	YNL197C	ASK10	P48361	1146 aa		4.09	□□□□□ -1.75
WHI3	YNL197C	EXG2	P52911	562 aa		4.09	□□□□□ -1.75
WHI3	YNL197C	HOL1	P53389	586 aa		4.09	□□□□□ -1.75
WHI3	YNL197C	PAP2	P53632	584 aa	Known RBP	4.09	□□□□□ -1.75
WHI3	YNL197C	VPS72	Q03388	795 aa		4.09	□□□□□ -1.75
WHI3	YNL197C	VHS3	Q08438	674 aa		4.09	□□□□□ -1.75
WHI3	YNL197C	TGL5	Q12043	749 aa		4.09	□□□□□ -1.75
WHI3	YNL197C	TRM11	Q12463	433 aa		4.09	□□□□□ -1.75
WHI3	YNL197C	HRP1	Q99383	534 aa	Known RBP	4.09	□□□□□ -1.75
WHI3	YNL197C	RPS13	P05756	151 aa	Known RBP	4.09	□□□□□ -1.76
WHI3	YNL197C	RNR1	P21524	888 aa	Known RBP	4.09	□□□□□ -1.76
WHI3	YNL197C	DPB3	P27344	201 aa		4.09	□□□□□ -1.76
WHI3	YNL197C	YBP2	P53169	641 aa		4.09	□□□□□ -1.76
WHI3	YNL197C	TEX1	P53851	422 aa	Known RBP	4.09	□□□□□ -1.76
WHI3	YNL197C	REC102	Q02721	264 aa		4.09	□□□□□ -1.76
WHI3	YNL197C	RGC1	Q06108	1083 aa	Known RBP	4.09	□□□□□ -1.76
WHI3	YNL197C	DIN7	Q12086	430 aa		4.09	□□□□□ -1.76
WHI3	YNL197C	NKP1	Q12493	238 aa		4.09	□□□□□ -1.76
WHI3	YNL197C	ADH4	P10127	382 aa		4.08	□□□□□ -1.76
WHI3	YNL197C	LST4	P34239	828 aa		4.08	□□□□□ -1.76

Retrieved 100 of 5,963 RNA–protein pairs in 37.5 ms