RNA–Protein interactions for RNA: YLR207W

HRD3, Transcript of ER membrane protein that plays a central role in ERAD, yeast

Gene HRD3, Length 2,502 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
HRD3	YLR207W	WHI3	P34761	661 aa	Known RBP	2.79	□□□□□ -1.96
HRD3	YLR207W	GPP2	P40106	250 aa	Known RBP	2.79	□□□□□ -1.96
HRD3	YLR207W	UBC9	P50623	157 aa	Predicted RBP	2.79	□□□□□ -1.96
HRD3	YLR207W	SDH1	Q00711	640 aa		2.79	□□□□□ -1.96
HRD3	YLR207W	RPN7	Q06103	429 aa	Known RBP	2.79	□□□□□ -1.96
HRD3	YLR207W	RSC58	Q07979	502 aa		2.79	□□□□□ -1.96
HRD3	YLR207W	SSP2	Q08646	371 aa		2.79	□□□□□ -1.96
HRD3	YLR207W	YPR027C	Q12079	277 aa		2.79	□□□□□ -1.96
HRD3	YLR207W	SNU66	Q12420	587 aa	Predicted RBP	2.79	□□□□□ -1.96
HRD3	YLR207W	BCK1	Q01389	1478 aa		2.78	□□□□□ -1.96
HRD3	YLR207W	CDC31	P06704	161 aa	Known RBP	2.78	□□□□□ -1.96
HRD3	YLR207W	COX11	P19516	300 aa	Known RBP	2.78	□□□□□ -1.96
HRD3	YLR207W	YKU70	P32807	602 aa		2.78	□□□□□ -1.96
HRD3	YLR207W	TYE7	P33122	291 aa	Predicted RBP	2.78	□□□□□ -1.96
HRD3	YLR207W	MDJ1	P35191	511 aa		2.78	□□□□□ -1.96
HRD3	YLR207W	POA1	P38218	177 aa		2.78	□□□□□ -1.96
HRD3	YLR207W	PSP2	P50109	593 aa	Known RBP	2.78	□□□□□ -1.96
HRD3	YLR207W	EAR1	Q03212	550 aa		2.78	□□□□□ -1.96
HRD3	YLR207W	SKY1	Q03656	742 aa		2.78	□□□□□ -1.96
HRD3	YLR207W	PDS5	Q04264	1277 aa		2.78	□□□□□ -1.96
HRD3	YLR207W	HPF1	Q05164	967 aa		2.78	□□□□□ -1.96
HRD3	YLR207W	HIM1	Q06674	414 aa		2.78	□□□□□ -1.96
HRD3	YLR207W	YVC1	Q12324	675 aa		2.78	□□□□□ -1.96
HRD3	YLR207W	ENT1	Q12518	454 aa		2.78	□□□□□ -1.96
HRD3	YLR207W	CFT1	Q06632	1357 aa	Known RBP	2.78	□□□□□ -1.96
HRD3	YLR207W	NUP192	P47054	1683 aa		2.78	□□□□□ -1.96
HRD3	YLR207W	MSH1	P25846	959 aa		2.78	□□□□□ -1.96
HRD3	YLR207W	NAM7	P30771	971 aa	Known RBP	2.78	□□□□□ -1.96
HRD3	YLR207W	COQ2	P32378	372 aa		2.78	□□□□□ -1.96
HRD3	YLR207W	RNR4	P49723	345 aa	Known RBP	2.78	□□□□□ -1.96
HRD3	YLR207W	HFM1	P51979	1187 aa		2.78	□□□□□ -1.96
HRD3	YLR207W	RAI1	P53063	387 aa	Known RBP	2.78	□□□□□ -1.96
HRD3	YLR207W	RSM24	Q03976	319 aa		2.78	□□□□□ -1.96
HRD3	YLR207W	LRS4	Q04087	347 aa	Known RBP	2.78	□□□□□ -1.96
HRD3	YLR207W	OPY2	Q06810	360 aa		2.78	□□□□□ -1.96
HRD3	YLR207W	GRC3	Q07845	632 aa		2.78	□□□□□ -1.96
HRD3	YLR207W	RCL1	Q08096	367 aa	Predicted RBP	2.78	□□□□□ -1.96
HRD3	YLR207W	RER1	P25560	188 aa		2.77	□□□□□ -1.97
HRD3	YLR207W	HEM12	P32347	362 aa	Predicted RBP	2.77	□□□□□ -1.97
HRD3	YLR207W	BEM3	P32873	1128 aa		2.77	□□□□□ -1.97
HRD3	YLR207W	ECM21	P38167	1117 aa	Known RBP	2.77	□□□□□ -1.97
HRD3	YLR207W	RRP8	P38961	392 aa	Known RBP	2.77	□□□□□ -1.97
HRD3	YLR207W	VTC2	P43585	828 aa		2.77	□□□□□ -1.97
HRD3	YLR207W	BNA2	P47125	453 aa		2.77	□□□□□ -1.97
HRD3	YLR207W	YKE2	P52553	114 aa		2.77	□□□□□ -1.97
HRD3	YLR207W	MTC3	P53077	123 aa		2.77	□□□□□ -1.97
HRD3	YLR207W	BUD9	P53226	547 aa		2.77	□□□□□ -1.97
HRD3	YLR207W	GPD1	Q00055	391 aa	Known RBP	2.77	□□□□□ -1.97
HRD3	YLR207W	YDR056C	Q12025	205 aa		2.77	□□□□□ -1.97
HRD3	YLR207W	YOR022C	Q12204	715 aa		2.77	□□□□□ -1.97
HRD3	YLR207W	SPT7	P35177	1332 aa		2.77	□□□□□ -1.97
HRD3	YLR207W	AI3	P03877	415 aa		2.77	□□□□□ -1.97
HRD3	YLR207W	LEU2	P04173	364 aa	Predicted RBP	2.77	□□□□□ -1.97
HRD3	YLR207W	HSF1	P10961	833 aa		2.77	□□□□□ -1.97
HRD3	YLR207W	SEC18	P18759	758 aa	Known RBP	2.77	□□□□□ -1.97
HRD3	YLR207W	YCL002C	P25565	263 aa		2.77	□□□□□ -1.97
HRD3	YLR207W	CCR4	P31384	837 aa	Known RBP	2.77	□□□□□ -1.97
HRD3	YLR207W	STE13	P33894	931 aa		2.77	□□□□□ -1.97
HRD3	YLR207W	NPP2	P39997	493 aa		2.77	□□□□□ -1.97
HRD3	YLR207W	CCT5	P40413	562 aa	Known RBP	2.77	□□□□□ -1.97
HRD3	YLR207W	YIL108W	P40483	696 aa	Known RBP	2.77	□□□□□ -1.97
HRD3	YLR207W	GTS1	P40956	396 aa		2.77	□□□□□ -1.97
HRD3	YLR207W	MEH1	Q02205	184 aa		2.77	□□□□□ -1.97
HRD3	YLR207W	YKR011C	Q02209	353 aa		2.77	□□□□□ -1.97
HRD3	YLR207W	SXM1	Q04175	944 aa	Known RBP	2.77	□□□□□ -1.97
HRD3	YLR207W	YDR338C	Q05497	695 aa		2.77	□□□□□ -1.97
HRD3	YLR207W	BLS1	Q06071	122 aa		2.77	□□□□□ -1.97
HRD3	YLR207W	VIP1	Q06685	1146 aa	Known RBP	2.77	□□□□□ -1.97
HRD3	YLR207W	TRE1	Q08919	783 aa		2.77	□□□□□ -1.97
HRD3	YLR207W	MED1	Q12321	566 aa		2.77	□□□□□ -1.97
HRD3	YLR207W	YLR419W	Q06698	1435 aa	Known RBP	2.77	□□□□□ -1.97
HRD3	YLR207W	SRP101	P32916	621 aa		2.76	□□□□□ -1.97
HRD3	YLR207W	RRN3	P36070	627 aa		2.76	□□□□□ -1.97
HRD3	YLR207W	PPE1	P38796	400 aa		2.76	□□□□□ -1.97
HRD3	YLR207W	PTC7	P38797	343 aa		2.76	□□□□□ -1.97
HRD3	YLR207W	SBE2	P42223	864 aa	Known RBP	2.76	□□□□□ -1.97
HRD3	YLR207W	QRI7	P43122	407 aa		2.76	□□□□□ -1.97
HRD3	YLR207W	ARI1	P53111	347 aa	Known RBP	2.76	□□□□□ -1.97
HRD3	YLR207W	HOL1	P53389	586 aa		2.76	□□□□□ -1.97
HRD3	YLR207W	GTR1	Q00582	310 aa		2.76	□□□□□ -1.97
HRD3	YLR207W	ECM9	Q02202	377 aa		2.76	□□□□□ -1.97
HRD3	YLR207W	PEX15	Q08215	383 aa		2.76	□□□□□ -1.97
HRD3	YLR207W	THI72	Q08579	599 aa		2.76	□□□□□ -1.97
HRD3	YLR207W	YOR352W	Q08816	343 aa		2.76	□□□□□ -1.97
HRD3	YLR207W	CLF1	Q12309	687 aa	Predicted RBP	2.76	□□□□□ -1.97
HRD3	YLR207W	SAM35	P14693	329 aa		2.76	□□□□□ -1.97
HRD3	YLR207W	MSM1	P22438	575 aa		2.76	□□□□□ -1.97
HRD3	YLR207W	CDC60	P26637	1090 aa	Known RBP	2.76	□□□□□ -1.97
HRD3	YLR207W	PEX5	P35056	612 aa		2.76	□□□□□ -1.97
HRD3	YLR207W	PSY4	P38193	441 aa		2.76	□□□□□ -1.97
HRD3	YLR207W	ERR3	P42222	437 aa		2.76	□□□□□ -1.97
HRD3	YLR207W	ECM38	Q05902	660 aa	Predicted RBP	2.76	□□□□□ -1.97
HRD3	YLR207W	YLR352W	Q06479	807 aa		2.76	□□□□□ -1.97
HRD3	YLR207W	YBR182C-A	Q8TGU6	64 aa		2.76	□□□□□ -1.97
HRD3	YLR207W	SEC65	P29478	273 aa		2.75	□□□□□ -1.97
HRD3	YLR207W	PXA2	P34230	853 aa		2.75	□□□□□ -1.97
HRD3	YLR207W	TAT1	P38085	619 aa		2.75	□□□□□ -1.97
HRD3	YLR207W	ESL1	P40456	1118 aa		2.75	□□□□□ -1.97
HRD3	YLR207W	ORC4	P54791	529 aa		2.75	□□□□□ -1.97
HRD3	YLR207W	YOL114C	Q12322	202 aa		2.75	□□□□□ -1.97

Retrieved 100 of 5,963 RNA–protein pairs in 10.9 ms