RNA–Protein interactions for RNA: YDR427W

RPN9, Transcript of Non-ATPase regulatory subunit of the 26S proteasome, yeast

Gene RPN9, Length 1,182 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RPN9	YDR427W	UBC9	P50623	157 aa	Predicted RBP	4.89	□□□□□ -1.63
RPN9	YDR427W	RPN7	Q06103	429 aa	Known RBP	4.89	□□□□□ -1.63
RPN9	YDR427W	TGL5	Q12043	749 aa		4.89	□□□□□ -1.63
RPN9	YDR427W	BRN1	P38170	754 aa		4.88	□□□□□ -1.63
RPN9	YDR427W	YJL206C	P39529	758 aa		4.88	□□□□□ -1.63
RPN9	YDR427W	TEL2	P53038	688 aa		4.88	□□□□□ -1.63
RPN9	YDR427W	ADR1	P07248	1323 aa		4.88	□□□□□ -1.63
RPN9	YDR427W	RPN13	O13563	156 aa		4.87	□□□□□ -1.63
RPN9	YDR427W	ORC2	P32833	620 aa		4.87	□□□□□ -1.63
RPN9	YDR427W	GID8	P40208	455 aa		4.87	□□□□□ -1.63
RPN9	YDR427W	HOS4	P40480	1083 aa		4.87	□□□□□ -1.63
RPN9	YDR427W	PCL10	P53124	433 aa		4.87	□□□□□ -1.63
RPN9	YDR427W	TEX1	P53851	422 aa	Known RBP	4.87	□□□□□ -1.63
RPN9	YDR427W	ARP4	P80428	489 aa		4.87	□□□□□ -1.63
RPN9	YDR427W	ARG5,6	Q01217	863 aa		4.87	□□□□□ -1.63
RPN9	YDR427W	ATG11	Q12527	1178 aa		4.87	□□□□□ -1.63
RPN9	YDR427W	ADE2	P21264	571 aa	Known RBP	4.86	□□□□□ -1.63
RPN9	YDR427W	APL2	P36000	726 aa	Predicted RBP	4.86	□□□□□ -1.63
RPN9	YDR427W	DOT6	P40059	670 aa	Known RBP	4.86	□□□□□ -1.63
RPN9	YDR427W	PRP31	P49704	494 aa	Predicted RBP	4.86	□□□□□ -1.63
RPN9	YDR427W	YBP2	P53169	641 aa		4.86	□□□□□ -1.63
RPN9	YDR427W	YNR029C	P53729	429 aa	Known RBP	4.86	□□□□□ -1.63
RPN9	YDR427W	ORC4	P54791	529 aa		4.86	□□□□□ -1.63
RPN9	YDR427W	SMX3	P54999	86 aa	Predicted RBP	4.86	□□□□□ -1.63
RPN9	YDR427W	MRI1	Q06489	411 aa	Known RBP	4.86	□□□□□ -1.63
RPN9	YDR427W	GUD1	Q07729	489 aa		4.86	□□□□□ -1.63
RPN9	YDR427W	MNN4	P36044	1178 aa		4.85	□□□□□ -1.63
RPN9	YDR427W	YHR112C	P38716	378 aa		4.85	□□□□□ -1.63
RPN9	YDR427W	BAP3	P41815	604 aa		4.85	□□□□□ -1.63
RPN9	YDR427W	YAP1802	P53309	568 aa		4.85	□□□□□ -1.63
RPN9	YDR427W	SDA1	P53313	767 aa	Known RBP	4.85	□□□□□ -1.63
RPN9	YDR427W	LEE1	Q02799	301 aa	Known RBP	4.85	□□□□□ -1.63
RPN9	YDR427W	TAF3	Q12297	353 aa		4.85	□□□□□ -1.63
RPN9	YDR427W	YGR161W-C	Q3E744	92 aa		4.85	□□□□□ -1.63
RPN9	YDR427W	BCD1	P38772	366 aa		4.84	□□□□□ -1.63
RPN9	YDR427W	BRE5	P53741	515 aa	Known RBP	4.84	□□□□□ -1.63
RPN9	YDR427W	HMO1	Q03973	246 aa	Known RBP	4.84	□□□□□ -1.63
RPN9	YDR427W	MCM21	Q06675	368 aa		4.84	□□□□□ -1.63
RPN9	YDR427W	THI73	Q07904	523 aa		4.84	□□□□□ -1.63
RPN9	YDR427W	DCS2	Q12123	353 aa		4.84	□□□□□ -1.63
RPN9	YDR427W	SSZ1	P38788	538 aa	Known RBP	4.83	□□□□□ -1.64
RPN9	YDR427W	YEL020C	P39994	560 aa		4.83	□□□□□ -1.64
RPN9	YDR427W	YJR039W	P47107	1121 aa		4.83	□□□□□ -1.64
RPN9	YDR427W	YJR096W	P47137	282 aa		4.83	□□□□□ -1.64
RPN9	YDR427W	HLJ1	P48353	224 aa		4.83	□□□□□ -1.64
RPN9	YDR427W	UBC11	P52492	156 aa		4.83	□□□□□ -1.64
RPN9	YDR427W	TRZ1	P36159	838 aa	Predicted RBP	4.82	□□□□□ -1.64
RPN9	YDR427W	CRP1	P38845	465 aa	Known RBP	4.82	□□□□□ -1.64
RPN9	YDR427W	CKB2	P38930	258 aa		4.82	□□□□□ -1.64
RPN9	YDR427W	PMT3	P47190	753 aa		4.82	□□□□□ -1.64
RPN9	YDR427W	GAD1	Q04792	585 aa		4.82	□□□□□ -1.64
RPN9	YDR427W	SSD1	P24276	1250 aa	Known RBP RIP-Chip data	4.81	□□□□□ -1.64	not detected
RPN9	YDR427W	ERG6	P25087	383 aa	Known RBP	4.81	□□□□□ -1.64
RPN9	YDR427W	AKL1	P38080	1108 aa	Known RBP	4.81	□□□□□ -1.64
RPN9	YDR427W	LYS9	P38999	446 aa		4.81	□□□□□ -1.64
RPN9	YDR427W	SET2	P46995	733 aa	Known RBP	4.81	□□□□□ -1.64
RPN9	YDR427W	GPG1	P53130	126 aa		4.81	□□□□□ -1.64
RPN9	YDR427W	YGL081W	P53156	320 aa		4.81	□□□□□ -1.64
RPN9	YDR427W	REC102	Q02721	264 aa		4.81	□□□□□ -1.64
RPN9	YDR427W	MTQ2	Q03920	221 aa	Predicted RBP	4.81	□□□□□ -1.64
RPN9	YDR427W	HRP1	Q99383	534 aa	Known RBP	4.81	□□□□□ -1.64
RPN9	YDR427W	HIR1	P32479	840 aa		4.8	□□□□□ -1.64
RPN9	YDR427W	TYS1	P36421	394 aa	Known RBP	4.8	□□□□□ -1.64
RPN9	YDR427W	APN2	P38207	520 aa		4.8	□□□□□ -1.64
RPN9	YDR427W	REV7	P38927	245 aa		4.8	□□□□□ -1.64
RPN9	YDR427W	BEM4	P39011	633 aa		4.8	□□□□□ -1.64
RPN9	YDR427W	UBP12	P39538	1254 aa		4.8	□□□□□ -1.64
RPN9	YDR427W	NDC80	P40460	691 aa		4.8	□□□□□ -1.64
RPN9	YDR427W	CCT7	P42943	550 aa	Known RBP	4.8	□□□□□ -1.64
RPN9	YDR427W	RET2	P43621	546 aa		4.8	□□□□□ -1.64
RPN9	YDR427W	MTL1	P53214	551 aa		4.8	□□□□□ -1.64
RPN9	YDR427W	UME1	Q03010	460 aa		4.8	□□□□□ -1.64
RPN9	YDR427W	HOM2	P13663	365 aa	Known RBP	4.79	□□□□□ -1.64
RPN9	YDR427W	EMP70	P32802	667 aa		4.79	□□□□□ -1.64
RPN9	YDR427W	APT2	P36973	181 aa		4.79	□□□□□ -1.64
RPN9	YDR427W	MAL31	P38156	614 aa		4.79	□□□□□ -1.64
RPN9	YDR427W	CCT5	P40413	562 aa	Known RBP	4.79	□□□□□ -1.64
RPN9	YDR427W	GAT1	P43574	510 aa		4.79	□□□□□ -1.64
RPN9	YDR427W	SIR3	P06701	978 aa		4.78	□□□□□ -1.64
RPN9	YDR427W	YPT7	P32939	208 aa		4.78	□□□□□ -1.64
RPN9	YDR427W	CCT3	P39077	534 aa	Known RBP	4.78	□□□□□ -1.64
RPN9	YDR427W	NUG1	P40010	520 aa	Known RBP	4.78	□□□□□ -1.64
RPN9	YDR427W	SCS3	P53012	380 aa		4.78	□□□□□ -1.64
RPN9	YDR427W	RIM13	Q03792	727 aa		4.78	□□□□□ -1.64
RPN9	YDR427W	CTK1	Q03957	528 aa	Known RBP	4.78	□□□□□ -1.64
RPN9	YDR427W	SEG1	Q04279	960 aa		4.78	□□□□□ -1.64
RPN9	YDR427W	PYC1	P11154	1178 aa	Known RBP	4.77	□□□□□ -1.65
RPN9	YDR427W	RNR1	P21524	888 aa	Known RBP	4.77	□□□□□ -1.65
RPN9	YDR427W	PRP19	P32523	503 aa	Known RBP	4.77	□□□□□ -1.65
RPN9	YDR427W	GLG1	P36143	616 aa		4.77	□□□□□ -1.65
RPN9	YDR427W	NUP60	P39705	539 aa		4.77	□□□□□ -1.65
RPN9	YDR427W	BDH2	P39713	417 aa		4.77	□□□□□ -1.65
RPN9	YDR427W	GET2	P40056	285 aa		4.77	□□□□□ -1.65
RPN9	YDR427W	ARG2	P40360	574 aa		4.77	□□□□□ -1.65
RPN9	YDR427W	GPP1	P41277	250 aa	Known RBP	4.77	□□□□□ -1.65
RPN9	YDR427W	GZF3	P42944	551 aa	Known RBP	4.77	□□□□□ -1.65
RPN9	YDR427W	NOP9	P47077	666 aa	Known RBP	4.77	□□□□□ -1.65
RPN9	YDR427W	GPD1	Q00055	391 aa	Known RBP	4.77	□□□□□ -1.65
RPN9	YDR427W	VPS34	P22543	875 aa		4.76	□□□□□ -1.65
RPN9	YDR427W	PEX1	P24004	1043 aa		4.76	□□□□□ -1.65

Retrieved 100 of 5,963 RNA–protein pairs in 41.7 ms