RNA–Protein interactions for RNA: YDL229W

SSB1, Transcript of Cytoplasmic ATPase that is a ribosome-associated molecular chaperone, yeast

Gene SSB1, Length 1,842 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SSB1	YDL229W	YNL146W	P53906	100 aa		4.53	□□□□□ -1.68
SSB1	YDL229W	COG6	P53959	839 aa		4.53	□□□□□ -1.68
SSB1	YDL229W	RMI1	Q02685	241 aa		4.53	□□□□□ -1.68
SSB1	YDL229W	SAS4	Q04003	481 aa		4.53	□□□□□ -1.68
SSB1	YDL229W	TRS120	Q04183	1289 aa		4.53	□□□□□ -1.68
SSB1	YDL229W	OMS1	Q06668	471 aa		4.53	□□□□□ -1.68
SSB1	YDL229W	DTD1	Q07648	150 aa	Known RBP	4.53	□□□□□ -1.68
SSB1	YDL229W	NTG2	Q08214	380 aa		4.53	□□□□□ -1.68
SSB1	YDL229W	NEW1	Q08972	1196 aa	Known RBP	4.53	□□□□□ -1.68
SSB1	YDL229W	ICL2	Q12031	575 aa		4.53	□□□□□ -1.68
SSB1	YDL229W	SCM3	Q12334	223 aa		4.53	□□□□□ -1.68
SSB1	YDL229W	PIF1	P07271	859 aa		4.53	□□□□□ -1.68
SSB1	YDL229W	OM45	P16547	393 aa		4.53	□□□□□ -1.68
SSB1	YDL229W	UBA1	P22515	1024 aa	Known RBP	4.53	□□□□□ -1.68
SSB1	YDL229W	DOA4	P32571	926 aa		4.53	□□□□□ -1.68
SSB1	YDL229W	TDP1	P38319	544 aa		4.53	□□□□□ -1.68
SSB1	YDL229W	STP2	P38704	541 aa		4.53	□□□□□ -1.68
SSB1	YDL229W	RRM3	P38766	723 aa		4.53	□□□□□ -1.68
SSB1	YDL229W	TDA11	P38854	504 aa		4.53	□□□□□ -1.68
SSB1	YDL229W	SCS2	P40075	244 aa	Known RBP	4.53	□□□□□ -1.68
SSB1	YDL229W	YTA12	P40341	825 aa		4.53	□□□□□ -1.68
SSB1	YDL229W	SAP185	P40856	1058 aa		4.53	□□□□□ -1.68
SSB1	YDL229W	BUD6	P41697	788 aa		4.53	□□□□□ -1.68
SSB1	YDL229W	LOC1	P43586	204 aa	Predicted RBP	4.53	□□□□□ -1.68
SSB1	YDL229W	BNA3	P47039	444 aa	Known RBP	4.53	□□□□□ -1.68
SSB1	YDL229W	MAD3	P47074	515 aa		4.53	□□□□□ -1.68
SSB1	YDL229W	PAN2	P53010	1115 aa	Predicted RBP	4.53	□□□□□ -1.68
SSB1	YDL229W	ARI1	P53111	347 aa	Known RBP	4.53	□□□□□ -1.68
SSB1	YDL229W	SPC105	P53148	917 aa		4.53	□□□□□ -1.68
SSB1	YDL229W	MAK10	Q02197	733 aa		4.53	□□□□□ -1.68
SSB1	YDL229W	EGD1	Q02642	157 aa	Known RBP	4.53	□□□□□ -1.68
SSB1	YDL229W	YML082W	Q04533	649 aa	Known RBP	4.53	□□□□□ -1.68
SSB1	YDL229W	SPC2	Q04969	178 aa		4.53	□□□□□ -1.68
SSB1	YDL229W	ARP9	Q05123	467 aa		4.53	□□□□□ -1.68
SSB1	YDL229W	SEC10	Q06245	871 aa		4.53	□□□□□ -1.68
SSB1	YDL229W	DAS2	Q12084	232 aa		4.53	□□□□□ -1.68
SSB1	YDL229W	GYP5	Q12344	894 aa		4.53	□□□□□ -1.68
SSB1	YDL229W	IES3	Q12345	250 aa		4.53	□□□□□ -1.68
SSB1	YDL229W	ARP6	Q12509	438 aa		4.53	□□□□□ -1.68
SSB1	YDL229W	PDR5	P33302	1511 aa	Known RBP	4.53	□□□□□ -1.68
SSB1	YDL229W	RAP1	P11938	827 aa		4.52	□□□□□ -1.69
SSB1	YDL229W	MSS116	P15424	664 aa	Known RBP	4.52	□□□□□ -1.69
SSB1	YDL229W	CKI1	P20485	582 aa		4.52	□□□□□ -1.69
SSB1	YDL229W	ARG1	P22768	420 aa		4.52	□□□□□ -1.69
SSB1	YDL229W	VPS21	P36017	210 aa	Known RBP	4.52	□□□□□ -1.69
SSB1	YDL229W	MRPL10	P36520	322 aa		4.52	□□□□□ -1.69
SSB1	YDL229W	CCZ1	P38273	704 aa		4.52	□□□□□ -1.69
SSB1	YDL229W	ROG3	P43602	733 aa		4.52	□□□□□ -1.69
SSB1	YDL229W	MEC3	Q02574	474 aa		4.52	□□□□□ -1.69
SSB1	YDL229W	VHS3	Q08438	674 aa		4.52	□□□□□ -1.69
SSB1	YDL229W	RSA1	Q08932	381 aa		4.52	□□□□□ -1.69
SSB1	YDL229W	ATG29	Q12092	213 aa		4.52	□□□□□ -1.69
SSB1	YDL229W	ADE6	P38972	1358 aa	Known RBP	4.52	□□□□□ -1.69
SSB1	YDL229W	BNI1	P41832	1953 aa		4.51	□□□□□ -1.69
SSB1	YDL229W	URA4	P20051	364 aa		4.51	□□□□□ -1.69
SSB1	YDL229W	TRX1	P22217	103 aa	Known RBP	4.51	□□□□□ -1.69
SSB1	YDL229W	BUD23	P25627	275 aa	Predicted RBP	4.51	□□□□□ -1.69
SSB1	YDL229W	NAM7	P30771	971 aa	Known RBP	4.51	□□□□□ -1.69
SSB1	YDL229W	PRP19	P32523	503 aa	Known RBP	4.51	□□□□□ -1.69
SSB1	YDL229W	LOS1	P33418	1100 aa	Predicted RBP	4.51	□□□□□ -1.69
SSB1	YDL229W	CPR5	P35176	225 aa		4.51	□□□□□ -1.69
SSB1	YDL229W	MDJ1	P35191	511 aa		4.51	□□□□□ -1.69
SSB1	YDL229W	SDS22	P36047	338 aa		4.51	□□□□□ -1.69
SSB1	YDL229W	SPP381	P38282	291 aa	Predicted RBP	4.51	□□□□□ -1.69
SSB1	YDL229W	MSG5	P38590	489 aa		4.51	□□□□□ -1.69
SSB1	YDL229W	HXT6	P39003	570 aa	Known RBP	4.51	□□□□□ -1.69
SSB1	YDL229W	HXT7	P39004	570 aa		4.51	□□□□□ -1.69
SSB1	YDL229W	AIM9	P40053	627 aa	Known RBP	4.51	□□□□□ -1.69
SSB1	YDL229W	PCL7	P40186	285 aa		4.51	□□□□□ -1.69
SSB1	YDL229W	NEO1	P40527	1151 aa		4.51	□□□□□ -1.69
SSB1	YDL229W	SNL1	P40548	159 aa		4.51	□□□□□ -1.69
SSB1	YDL229W	EPL1	P43572	832 aa		4.51	□□□□□ -1.69
SSB1	YDL229W	YGL176C	P46945	554 aa		4.51	□□□□□ -1.69
SSB1	YDL229W	MAL11	P53048	616 aa		4.51	□□□□□ -1.69
SSB1	YDL229W	MRM2	P53123	320 aa		4.51	□□□□□ -1.69
SSB1	YDL229W	LIF1	P53150	421 aa		4.51	□□□□□ -1.69
SSB1	YDL229W	PEX8	P53248	589 aa		4.51	□□□□□ -1.69
SSB1	YDL229W	MRPL50	P53724	139 aa		4.51	□□□□□ -1.69
SSB1	YDL229W	MNT4	P53745	580 aa		4.51	□□□□□ -1.69
SSB1	YDL229W	CWC25	P53854	179 aa	Known RBP	4.51	□□□□□ -1.69
SSB1	YDL229W	HPC2	Q01448	625 aa		4.51	□□□□□ -1.69
SSB1	YDL229W	YDR131C	Q03899	556 aa		4.51	□□□□□ -1.69
SSB1	YDL229W	GAD1	Q04792	585 aa		4.51	□□□□□ -1.69
SSB1	YDL229W	STE23	Q06010	1027 aa		4.51	□□□□□ -1.69
SSB1	YDL229W	NOP6	Q07623	225 aa	Known RBP	4.51	□□□□□ -1.69
SSB1	YDL229W	CMC2	Q3E7A4	109 aa		4.51	□□□□□ -1.69
SSB1	YDL229W	SIR3	P06701	978 aa		4.51	□□□□□ -1.69
SSB1	YDL229W	FBP1	P09201	348 aa		4.51	□□□□□ -1.69
SSB1	YDL229W	SBP1	P10080	294 aa	Known RBP	4.51	□□□□□ -1.69
SSB1	YDL229W	MET8	P15807	274 aa		4.51	□□□□□ -1.69
SSB1	YDL229W	RDS2	P19541	446 aa	Known RBP	4.51	□□□□□ -1.69
SSB1	YDL229W	RAD53	P22216	821 aa		4.51	□□□□□ -1.69
SSB1	YDL229W	DMC1	P25453	334 aa		4.51	□□□□□ -1.69
SSB1	YDL229W	EFT1	P32324	842 aa	Known RBP	4.51	□□□□□ -1.69
SSB1	YDL229W	VMA6	P32366	345 aa	Known RBP	4.51	□□□□□ -1.69
SSB1	YDL229W	GIP1	P38229	639 aa		4.51	□□□□□ -1.69
SSB1	YDL229W	YMR262W	P38430	313 aa		4.51	□□□□□ -1.69
SSB1	YDL229W	SOH1	P38633	127 aa		4.51	□□□□□ -1.69
SSB1	YDL229W	KEL1	P38853	1164 aa	Known RBP	4.51	□□□□□ -1.69
SSB1	YDL229W	YEN1	P40028	759 aa		4.51	□□□□□ -1.69

Retrieved 100 of 5,963 RNA–protein pairs in 16.1 ms