RNA–Protein interactions for RNA: YAL013W

DEP1, Transcript of Component of the Rpd3L histone deacetylase complex, yeastyeast

Gene DEP1, Length 1,218 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
DEP1YAL013W BRL1P38770 471 aa14.92□□□□□ -0.02
DEP1YAL013W PRP31P49704 494 aaPredicted RBP14.92□□□□□ -0.02
DEP1YAL013W EEB1Q02891 456 aa14.92□□□□□ -0.02
DEP1YAL013W ECI1Q05871 280 aa14.92□□□□□ -0.02
DEP1YAL013W PUF3Q07807 879 aaKnown RBP RIP-Chip data14.92□□□□□ -0.02not detected
DEP1YAL013W RPO26P20435 155 aa14.91□□□□□ -0.02
DEP1YAL013W CAP1P28495 268 aaKnown RBP14.91□□□□□ -0.02
DEP1YAL013W NOP4P37838 685 aaKnown RBP14.91□□□□□ -0.02
DEP1YAL013W PMC1P38929 1173 aaPredicted RBP14.91□□□□□ -0.02
DEP1YAL013W CCT4P39078 528 aaKnown RBP14.91□□□□□ -0.02
DEP1YAL013W STB4P50104 949 aa14.91□□□□□ -0.02
DEP1YAL013W ALT2P52892 507 aa14.91□□□□□ -0.02
DEP1YAL013W MND1P53102 219 aa14.91□□□□□ -0.02
DEP1YAL013W ATG23Q06671 453 aa14.91□□□□□ -0.02
DEP1YAL013W DBF4P32325 704 aa14.9□□□□□ -0.02
DEP1YAL013W EFB1P32471 206 aaKnown RBP14.9□□□□□ -0.02
DEP1YAL013W YJR054WP47114 497 aa14.9□□□□□ -0.02
DEP1YAL013W HOP2P53187 214 aa14.9□□□□□ -0.02
DEP1YAL013W YNL115CP53925 644 aa14.9□□□□□ -0.02
DEP1YAL013W GPD1Q00055 391 aaKnown RBP14.9□□□□□ -0.02
DEP1YAL013W MZM1Q03429 123 aaPredicted RBP14.9□□□□□ -0.02
DEP1YAL013W URH1Q04179 340 aa14.9□□□□□ -0.02
DEP1YAL013W NOP6Q07623 225 aaKnown RBP14.9□□□□□ -0.02
DEP1YAL013W VBA3P25594 458 aa14.89□□□□□ -0.03
DEP1YAL013W ABD1P32783 436 aaPredicted RBP14.89□□□□□ -0.03
DEP1YAL013W VBA5P36172 582 aa14.89□□□□□ -0.03
DEP1YAL013W DSE1P40077 573 aa14.89□□□□□ -0.03
DEP1YAL013W ESL1P40456 1118 aa14.89□□□□□ -0.03
DEP1YAL013W TRE1Q08919 783 aa14.89□□□□□ -0.03
DEP1YAL013W TPK1P06244 397 aa14.88□□□□□ -0.03
DEP1YAL013W SAT4P25333 603 aaKnown RBP14.88□□□□□ -0.03
DEP1YAL013W GYP6P32806 458 aa14.88□□□□□ -0.03
DEP1YAL013W CSE2P33308 149 aa14.88□□□□□ -0.03
DEP1YAL013W YBL055CP34220 418 aaPredicted RBP14.88□□□□□ -0.03
DEP1YAL013W KDX1P36005 433 aa14.88□□□□□ -0.03
DEP1YAL013W GRS1P38088 690 aaKnown RBP14.88□□□□□ -0.03
DEP1YAL013W SLX1P38324 304 aa14.88□□□□□ -0.03
DEP1YAL013W MMS21P38632 267 aa14.88□□□□□ -0.03
DEP1YAL013W SNZ3P43545 298 aa14.88□□□□□ -0.03
DEP1YAL013W POL31P46957 487 aa14.88□□□□□ -0.03
DEP1YAL013W SNZ2P53824 298 aa14.88□□□□□ -0.03
DEP1YAL013W YMR187CQ03236 431 aa14.88□□□□□ -0.03
DEP1YAL013W MAG2Q06436 670 aaKnown RBP14.88□□□□□ -0.03
DEP1YAL013W NUR1Q12066 484 aa14.88□□□□□ -0.03
DEP1YAL013W HEL1P36113 551 aa14.87□□□□□ -0.03
DEP1YAL013W QNS1P38795 714 aaKnown RBP14.87□□□□□ -0.03
DEP1YAL013W GEM1P39722 662 aa14.87□□□□□ -0.03
DEP1YAL013W SPO74P45819 413 aa14.87□□□□□ -0.03
DEP1YAL013W RPC17P47076 161 aa14.87□□□□□ -0.03
DEP1YAL013W RIM8P53179 542 aa14.87□□□□□ -0.03
DEP1YAL013W STP1Q00947 519 aa14.87□□□□□ -0.03
DEP1YAL013W MTG1Q03151 367 aaPredicted RBP14.87□□□□□ -0.03
DEP1YAL013W TIF35Q04067 274 aaKnown RBP14.87□□□□□ -0.03
DEP1YAL013W SXM1Q04175 944 aaKnown RBP14.87□□□□□ -0.03
DEP1YAL013W GYL1Q04322 720 aa14.87□□□□□ -0.03
DEP1YAL013W TDA9Q04545 1251 aa14.87□□□□□ -0.03
DEP1YAL013W ZRT2Q12436 422 aa14.87□□□□□ -0.03
DEP1YAL013W SFL1P20134 766 aa14.86□□□□□ -0.03
DEP1YAL013W YBL036CP38197 257 aa14.86□□□□□ -0.03
DEP1YAL013W CBR1P38626 284 aaKnown RBP14.86□□□□□ -0.03
DEP1YAL013W TMN3P40071 706 aa14.86□□□□□ -0.03
DEP1YAL013W ASG7P46993 209 aa14.86□□□□□ -0.03
DEP1YAL013W VMA4P22203 233 aaKnown RBP14.85□□□□□ -0.03
DEP1YAL013W SPT5P27692 1063 aaKnown RBP14.85□□□□□ -0.03
DEP1YAL013W FRE1P32791 686 aa14.85□□□□□ -0.03
DEP1YAL013W TBS1P38114 1094 aa14.85□□□□□ -0.03
DEP1YAL013W RCR2Q03446 210 aaKnown RBP14.85□□□□□ -0.03
DEP1YAL013W DIS3Q08162 1001 aaKnown RBP14.85□□□□□ -0.03
DEP1YAL013W AIM41Q12032 185 aa14.85□□□□□ -0.03
DEP1YAL013W JIP3O13555 125 aa14.84□□□□□ -0.03
DEP1YAL013W PUT4P15380 627 aa14.84□□□□□ -0.03
DEP1YAL013W END3P39013 349 aa14.84□□□□□ -0.03
DEP1YAL013W FOL2P51601 243 aaKnown RBP14.84□□□□□ -0.03
DEP1YAL013W SLG1P54867 378 aa14.84□□□□□ -0.03
DEP1YAL013W ARO80Q04052 950 aa14.84□□□□□ -0.03
DEP1YAL013W UFO1Q04511 668 aa14.84□□□□□ -0.03
DEP1YAL013W VPS54Q12071 889 aa14.84□□□□□ -0.03
DEP1YAL013W PDR1P12383 1068 aa14.83□□□□□ -0.04
DEP1YAL013W VPS3P23643 1011 aa14.83□□□□□ -0.04
DEP1YAL013W ABZ1P37254 787 aaPredicted RBP14.83□□□□□ -0.04
DEP1YAL013W YFL040WP43562 540 aa14.83□□□□□ -0.04
DEP1YAL013W YOR059CQ08448 450 aaKnown RBP14.83□□□□□ -0.04
DEP1YAL013W GAL80P04387 435 aa14.82□□□□□ -0.04
DEP1YAL013W SLA2P33338 968 aa14.82□□□□□ -0.04
DEP1YAL013W LTV1P34078 463 aa14.82□□□□□ -0.04
DEP1YAL013W SEG2P34250 1132 aa14.82□□□□□ -0.04
DEP1YAL013W PAM1P37304 830 aaKnown RBP14.82□□□□□ -0.04
DEP1YAL013W MUB1Q03162 620 aa14.82□□□□□ -0.04
DEP1YAL013W IVY1Q04934 453 aa14.82□□□□□ -0.04
DEP1YAL013W RIO1Q12196 484 aaKnown RBP14.82□□□□□ -0.04
DEP1YAL013W YLR422WQ06409 1932 aa14.82□□□□□ -0.04
DEP1YAL013W UBR2Q07963 1872 aa14.81□□□□□ -0.04
DEP1YAL013W KAR3P17119 729 aa14.81□□□□□ -0.04
DEP1YAL013W GAC1P28006 793 aa14.81□□□□□ -0.04
DEP1YAL013W MRPL7P36519 292 aa14.81□□□□□ -0.04
DEP1YAL013W PCM1P38628 557 aaKnown RBP14.81□□□□□ -0.04
DEP1YAL013W SAK1P38990 1142 aa14.81□□□□□ -0.04
DEP1YAL013W FIR1P40020 876 aa14.81□□□□□ -0.04
DEP1YAL013W SPC98P53540 846 aa14.81□□□□□ -0.04
DEP1YAL013W ESC8Q08119 714 aa14.81□□□□□ -0.04
Retrieved 100 of 5,963 RNA–protein pairs in 22.3 ms