RNA–Protein interactions for RNA: YML029W

USA1, Transcript of Scaffold subunit of the Hrd1p ubiquitin ligase, yeast

Gene USA1, Length 2,517 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
USA1	YML029W	YPR078C	Q06813	372 aa		4.18	□□□□□ -1.74
USA1	YML029W	YDL073W	Q07454	984 aa		4.18	□□□□□ -1.74
USA1	YML029W	MLH2	Q07980	695 aa		4.18	□□□□□ -1.74
USA1	YML029W	YDL206W	Q12424	762 aa		4.18	□□□□□ -1.74
USA1	YML029W	ENO1	P00924	437 aa	Known RBP	4.17	□□□□□ -1.74
USA1	YML029W	GFA1	P14742	717 aa	Known RBP	4.17	□□□□□ -1.74
USA1	YML029W	SWI3	P32591	825 aa		4.17	□□□□□ -1.74
USA1	YML029W	STB5	P38699	743 aa		4.17	□□□□□ -1.74
USA1	YML029W	ERC1	P38767	581 aa		4.17	□□□□□ -1.74
USA1	YML029W	MET13	P53128	600 aa		4.17	□□□□□ -1.74
USA1	YML029W	HEH2	Q03281	663 aa		4.17	□□□□□ -1.74
USA1	YML029W	UTP14	Q04500	899 aa	Known RBP	4.17	□□□□□ -1.74
USA1	YML029W	MRX10	Q05648	414 aa		4.17	□□□□□ -1.74
USA1	YML029W	SPO75	Q07798	868 aa		4.17	□□□□□ -1.74
USA1	YML029W	COX4	P04037	155 aa		4.17	□□□□□ -1.74
USA1	YML029W	SHE3	P38272	425 aa	Known RBP	4.17	□□□□□ -1.74
USA1	YML029W	HSH155	P49955	971 aa	Known RBP	4.17	□□□□□ -1.74
USA1	YML029W	ORC5	P50874	479 aa		4.17	□□□□□ -1.74
USA1	YML029W	STE20	Q03497	939 aa	Known RBP	4.17	□□□□□ -1.74
USA1	YML029W	IWR1	Q07532	353 aa	Predicted RBP	4.17	□□□□□ -1.74
USA1	YML029W	ENO2	P00925	437 aa	Known RBP	4.16	□□□□□ -1.74
USA1	YML029W	SCP160	P06105	1222 aa	Known RBP RIP-Chip data	4.16	□□□□□ -1.74	not detected
USA1	YML029W	VPS3	P23643	1011 aa		4.16	□□□□□ -1.74
USA1	YML029W	RSA4	P25382	515 aa	Known RBP	4.16	□□□□□ -1.74
USA1	YML029W	NOP4	P37838	685 aa	Known RBP	4.16	□□□□□ -1.74
USA1	YML029W	RTT107	P38850	1070 aa		4.16	□□□□□ -1.74
USA1	YML029W	SAH1	P39954	449 aa	Known RBP	4.16	□□□□□ -1.74
USA1	YML029W	HFM1	P51979	1187 aa		4.16	□□□□□ -1.74
USA1	YML029W	ALF1	P53904	254 aa		4.16	□□□□□ -1.74
USA1	YML029W	SYH1	Q02875	849 aa	Known RBP	4.16	□□□□□ -1.74
USA1	YML029W	YCG1	Q06680	1035 aa		4.16	□□□□□ -1.74
USA1	YML029W	CWC2	Q12046	339 aa	Predicted RBP	4.16	□□□□□ -1.74
USA1	YML029W	OSH2	Q12451	1283 aa		4.16	□□□□□ -1.74
USA1	YML029W	PDR1	P12383	1068 aa		4.16	□□□□□ -1.74
USA1	YML029W	VFA1	P40080	203 aa		4.16	□□□□□ -1.74
USA1	YML029W	LSB6	P42951	607 aa		4.16	□□□□□ -1.74
USA1	YML029W	YJL045W	P47052	634 aa		4.16	□□□□□ -1.74
USA1	YML029W	DOS2	P54858	310 aa		4.16	□□□□□ -1.74
USA1	YML029W	YLR287C	Q05881	355 aa		4.16	□□□□□ -1.74
USA1	YML029W	HMI1	Q12039	706 aa		4.16	□□□□□ -1.74
USA1	YML029W	RAD59	Q12223	238 aa		4.16	□□□□□ -1.74
USA1	YML029W	GAL80	P04387	435 aa		4.15	□□□□□ -1.74
USA1	YML029W	MNR2	P35724	969 aa		4.15	□□□□□ -1.74
USA1	YML029W	SOL3	P38858	249 aa		4.15	□□□□□ -1.74
USA1	YML029W	RAD55	P38953	406 aa		4.15	□□□□□ -1.74
USA1	YML029W	YFL052W	P43551	465 aa		4.15	□□□□□ -1.74
USA1	YML029W	TAF1	P46677	1066 aa		4.15	□□□□□ -1.74
USA1	YML029W	YJR054W	P47114	497 aa		4.15	□□□□□ -1.74
USA1	YML029W	ADA2	Q02336	434 aa		4.15	□□□□□ -1.74
USA1	YML029W	SPO71	Q03868	1245 aa		4.15	□□□□□ -1.74
USA1	YML029W	PPM1	Q04081	328 aa		4.15	□□□□□ -1.74
USA1	YML029W	SXM1	Q04175	944 aa	Known RBP	4.15	□□□□□ -1.74
USA1	YML029W	SHS1	Q07657	551 aa		4.15	□□□□□ -1.74
USA1	YML029W	ESC8	Q08119	714 aa		4.15	□□□□□ -1.74
USA1	YML029W	APL4	Q12028	832 aa		4.15	□□□□□ -1.74
USA1	YML029W	TAF10	Q12030	206 aa		4.15	□□□□□ -1.74
USA1	YML029W	ATG9	Q12142	997 aa		4.15	□□□□□ -1.74
USA1	YML029W	RRP6	Q12149	733 aa	Known RBP	4.15	□□□□□ -1.74
USA1	YML029W	YOR022C	Q12204	715 aa		4.15	□□□□□ -1.74
USA1	YML029W	AI5_BETA	Q9ZZX0	354 aa		4.15	□□□□□ -1.74
USA1	YML029W	TOM70	P07213	617 aa	Known RBP	4.15	□□□□□ -1.75
USA1	YML029W	PPR1	P07272	904 aa	Predicted RBP	4.15	□□□□□ -1.75
USA1	YML029W	YER152C	P10356	443 aa		4.15	□□□□□ -1.75
USA1	YML029W	CDC42	P19073	191 aa		4.15	□□□□□ -1.75
USA1	YML029W	MFT1	P33441	392 aa	Known RBP	4.15	□□□□□ -1.75
USA1	YML029W	TGL4	P36165	910 aa		4.15	□□□□□ -1.75
USA1	YML029W	YBR284W	P38150	797 aa		4.15	□□□□□ -1.75
USA1	YML029W	PMC1	P38929	1173 aa	Predicted RBP	4.15	□□□□□ -1.75
USA1	YML029W	YAP5	P40574	245 aa		4.15	□□□□□ -1.75
USA1	YML029W	POL31	P46957	487 aa		4.15	□□□□□ -1.75
USA1	YML029W	NIS1	P53939	407 aa		4.15	□□□□□ -1.75
USA1	YML029W	MRI1	Q06489	411 aa	Known RBP	4.15	□□□□□ -1.75
USA1	YML029W	DAS2	Q12084	232 aa		4.15	□□□□□ -1.75
USA1	YML029W	MNL2	Q12205	849 aa		4.15	□□□□□ -1.75
USA1	YML029W	CTF3	Q12748	733 aa		4.15	□□□□□ -1.75
USA1	YML029W	UBR2	Q07963	1872 aa		4.14	□□□□□ -1.75
USA1	YML029W	RGR1	P19263	1082 aa		4.14	□□□□□ -1.75
USA1	YML029W	CSG2	P35206	410 aa		4.14	□□□□□ -1.75
USA1	YML029W	ULI1	P43604	169 aa		4.14	□□□□□ -1.75
USA1	YML029W	STU2	P46675	888 aa		4.14	□□□□□ -1.75
USA1	YML029W	VPS25	P47142	202 aa		4.14	□□□□□ -1.75
USA1	YML029W	UME1	Q03010	460 aa		4.14	□□□□□ -1.75
USA1	YML029W	CWC21	Q03375	135 aa	Known RBP	4.14	□□□□□ -1.75
USA1	YML029W	UTP5	Q04177	643 aa	Known RBP	4.14	□□□□□ -1.75
USA1	YML029W	LAA1	P39526	2014 aa		4.14	□□□□□ -1.75
USA1	YML029W	GAL10	P04397	699 aa		4.14	□□□□□ -1.75
USA1	YML029W	SEC23	P15303	768 aa	Known RBP	4.14	□□□□□ -1.75
USA1	YML029W	SPO12	P17123	173 aa		4.14	□□□□□ -1.75
USA1	YML029W	YJU3	P28321	313 aa		4.14	□□□□□ -1.75
USA1	YML029W	HXT1	P32465	570 aa		4.14	□□□□□ -1.75
USA1	YML029W	SWE1	P32944	819 aa		4.14	□□□□□ -1.75
USA1	YML029W	SLA2	P33338	968 aa		4.14	□□□□□ -1.75
USA1	YML029W	PCH2	P38126	564 aa		4.14	□□□□□ -1.75
USA1	YML029W	ERP5	P38819	212 aa		4.14	□□□□□ -1.75
USA1	YML029W	DSE1	P40077	573 aa		4.14	□□□□□ -1.75
USA1	YML029W	PSY2	P40164	858 aa		4.14	□□□□□ -1.75
USA1	YML029W	YTA12	P40341	825 aa		4.14	□□□□□ -1.75
USA1	YML029W	SHQ1	P40486	507 aa	Predicted RBP	4.14	□□□□□ -1.75
USA1	YML029W	CPR7	P47103	393 aa		4.14	□□□□□ -1.75
USA1	YML029W	ALT1	P52893	592 aa		4.14	□□□□□ -1.75

Retrieved 100 of 5,963 RNA–protein pairs in 15.7 ms