RNA–Protein interactions for RNA: YKL017C

HCS1, Transcript of Hexameric DNA polymerase alpha-associated DNA helicase A, yeast

Gene HCS1, Length 2,052 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
HCS1	YKL017C	SSF2	Q12153	453 aa	Predicted RBP	2.64	□□□□□ -1.99
HCS1	YKL017C	YCL002C	P25565	263 aa		2.64	□□□□□ -1.99
HCS1	YKL017C	SPC29	P33419	253 aa		2.64	□□□□□ -1.99
HCS1	YKL017C	PFD1	P46988	109 aa		2.64	□□□□□ -1.99
HCS1	YKL017C	LRS4	Q04087	347 aa	Known RBP	2.64	□□□□□ -1.99
HCS1	YKL017C	YBR184W	P38299	523 aa		2.63	□□□□□ -1.99
HCS1	YKL017C	SFB3	P38810	929 aa		2.63	□□□□□ -1.99
HCS1	YKL017C	SPF1	P39986	1215 aa	Known RBP	2.63	□□□□□ -1.99
HCS1	YKL017C	ALR2	P43553	858 aa		2.63	□□□□□ -1.99
HCS1	YKL017C	MTR3	P48240	250 aa	Predicted RBP	2.63	□□□□□ -1.99
HCS1	YKL017C	TAD1	P53065	400 aa		2.63	□□□□□ -1.99
HCS1	YKL017C	MPS1	P54199	764 aa		2.63	□□□□□ -1.99
HCS1	YKL017C	MSD1	P15179	658 aa	Known RBP	2.62	□□□□□ -1.99
HCS1	YKL017C	CCR4	P31384	837 aa	Known RBP	2.62	□□□□□ -1.99
HCS1	YKL017C	SAP190	P36123	1033 aa		2.62	□□□□□ -1.99
HCS1	YKL017C	ECM1	P39715	212 aa		2.62	□□□□□ -1.99
HCS1	YKL017C	FHN1	P53279	174 aa		2.62	□□□□□ -1.99
HCS1	YKL017C	PGK1	P00560	416 aa	Known RBP	2.62	□□□□□ -1.99
HCS1	YKL017C	TOP1	P04786	769 aa		2.62	□□□□□ -1.99
HCS1	YKL017C	ERG11	P10614	530 aa		2.62	□□□□□ -1.99
HCS1	YKL017C	XBP1	P40489	647 aa		2.62	□□□□□ -1.99
HCS1	YKL017C	UTP8	P53276	713 aa	Known RBP	2.62	□□□□□ -1.99
HCS1	YKL017C	HBN1	Q96VH4	193 aa		2.62	□□□□□ -1.99
HCS1	YKL017C	YLR149C	Q99296	730 aa		2.62	□□□□□ -1.99
HCS1	YKL017C	PHR1	P05066	565 aa	Known RBP RIP-Chip data	2.61	□□□□□ -1.99	not detected
HCS1	YKL017C	MVD1	P32377	396 aa	Known RBP	2.61	□□□□□ -1.99
HCS1	YKL017C	RGT1	P32862	1170 aa		2.61	□□□□□ -1.99
HCS1	YKL017C	MUP3	P38734	546 aa		2.61	□□□□□ -1.99
HCS1	YKL017C	FMO1	P38866	432 aa		2.61	□□□□□ -1.99
HCS1	YKL017C	MTL1	P53214	551 aa		2.61	□□□□□ -1.99
HCS1	YKL017C	PHO11	P35842	467 aa		2.61	□□□□□ -1.99
HCS1	YKL017C	EMC3	P36039	253 aa		2.61	□□□□□ -1.99
HCS1	YKL017C	PHO12	P38693	467 aa		2.61	□□□□□ -1.99
HCS1	YKL017C	SET5	P38890	526 aa	Known RBP	2.61	□□□□□ -1.99
HCS1	YKL017C	HRB1	P38922	454 aa	Known RBP RIP-Chip data	2.61	□□□□□ -1.99	not detected
HCS1	YKL017C	CTK1	Q03957	528 aa	Known RBP	2.61	□□□□□ -1.99
HCS1	YKL017C	TDA5	Q06417	326 aa	Known RBP	2.61	□□□□□ -1.99
HCS1	YKL017C	FMP25	Q08023	583 aa		2.61	□□□□□ -1.99
HCS1	YKL017C	CIR2	Q08822	631 aa		2.61	□□□□□ -1.99
HCS1	YKL017C	YTA7	P40340	1379 aa		2.6	□□□□□ -1.99
HCS1	YKL017C	NUP60	P39705	539 aa		2.6	□□□□□ -1.99
HCS1	YKL017C	TDA9	Q04545	1251 aa		2.6	□□□□□ -1.99
HCS1	YKL017C	MLH3	Q12083	715 aa		2.6	□□□□□ -1.99
HCS1	YKL017C	LYS9	P38999	446 aa		2.59	□□□□□ -1.99
HCS1	YKL017C	YGR283C	P53336	341 aa	Predicted RBP	2.59	□□□□□ -1.99
HCS1	YKL017C	SVF1	Q05515	481 aa		2.59	□□□□□ -1.99
HCS1	YKL017C	NUP1	P20676	1076 aa		2.59	□□□□□ -2
HCS1	YKL017C	RPA135	P22138	1203 aa	Known RBP	2.59	□□□□□ -2
HCS1	YKL017C	PRP31	P49704	494 aa	Predicted RBP	2.59	□□□□□ -2
HCS1	YKL017C	ZIP2	P53061	704 aa		2.59	□□□□□ -2
HCS1	YKL017C	YBP2	P53169	641 aa		2.59	□□□□□ -2
HCS1	YKL017C	UBX5	Q06682	500 aa		2.59	□□□□□ -2
HCS1	YKL017C	YBR182C-A	Q8TGU6	64 aa		2.59	□□□□□ -2
HCS1	YKL017C	FUB1	P25659	250 aa		2.58	□□□□□ -2
HCS1	YKL017C	YHR112C	P38716	378 aa		2.58	□□□□□ -2
HCS1	YKL017C	ATG36	P46983	293 aa		2.58	□□□□□ -2
HCS1	YKL017C	REH1	Q06709	432 aa		2.58	□□□□□ -2
HCS1	YKL017C	GMH1	P36125	273 aa		2.57	□□□□□ -2
HCS1	YKL017C	YHR020W	P38708	688 aa	Known RBP	2.57	□□□□□ -2
HCS1	YKL017C	MEP2	P41948	499 aa		2.57	□□□□□ -2
HCS1	YKL017C	GYP8	P43570	497 aa		2.57	□□□□□ -2
HCS1	YKL017C	FMP30	Q02883	468 aa		2.57	□□□□□ -2
HCS1	YKL017C	EAF1	Q06337	982 aa		2.57	□□□□□ -2
HCS1	YKL017C	THR1	P17423	357 aa	Known RBP	2.57	□□□□□ -2
HCS1	YKL017C	TRZ1	P36159	838 aa	Predicted RBP	2.57	□□□□□ -2
HCS1	YKL017C	BUD6	P41697	788 aa		2.57	□□□□□ -2
HCS1	YKL017C	SHR5	P41912	237 aa		2.57	□□□□□ -2
HCS1	YKL017C	UBP6	P43593	499 aa	Known RBP	2.57	□□□□□ -2
HCS1	YKL017C	ZRT2	Q12436	422 aa		2.57	□□□□□ -2
HCS1	YKL017C	CIT2	P08679	460 aa		2.56	□□□□□ -2
HCS1	YKL017C	ADE2	P21264	571 aa	Known RBP	2.56	□□□□□ -2
HCS1	YKL017C	APN1	P22936	367 aa		2.56	□□□□□ -2
HCS1	YKL017C	GRX1	P25373	110 aa	Known RBP	2.56	□□□□□ -2
HCS1	YKL017C	KCC4	P25389	1037 aa		2.56	□□□□□ -2
HCS1	YKL017C	RPL8B	P29453	256 aa	Known RBP	2.56	□□□□□ -2
HCS1	YKL017C	APL2	P36000	726 aa	Predicted RBP	2.56	□□□□□ -2
HCS1	YKL017C	ZDS1	P50111	915 aa	Known RBP	2.56	□□□□□ -2
HCS1	YKL017C	YRB30	P53107	440 aa	Predicted RBP	2.56	□□□□□ -2
HCS1	YKL017C	YDR514C	Q04408	483 aa		2.56	□□□□□ -2
HCS1	YKL017C	RGC1	Q06108	1083 aa	Known RBP	2.56	□□□□□ -2
HCS1	YKL017C	USV1	Q12132	391 aa		2.56	□□□□□ -2
HCS1	YKL017C	YOL098C	Q12496	1037 aa		2.56	□□□□□ -2
HCS1	YKL017C	SAT4	P25333	603 aa	Known RBP	2.56	□□□□□ -2
HCS1	YKL017C	RLP7	P40693	322 aa	Known RBP	2.56	□□□□□ -2
HCS1	YKL017C	ERP6	P53198	216 aa		2.56	□□□□□ -2
HCS1	YKL017C	ARG5,6	Q01217	863 aa		2.56	□□□□□ -2
HCS1	YKL017C	HRP1	Q99383	534 aa	Known RBP	2.56	□□□□□ -2
HCS1	YKL017C	ADE5,7	P07244	802 aa	Known RBP	2.55	□□□□□ -2
HCS1	YKL017C	ERG6	P25087	383 aa	Known RBP	2.55	□□□□□ -2
HCS1	YKL017C	SET3	P36124	751 aa		2.55	□□□□□ -2
HCS1	YKL017C	PBP2	P38151	413 aa	Known RBP RIP-Chip data	2.55	□□□□□ -2	not detected
HCS1	YKL017C	BRN1	P38170	754 aa		2.55	□□□□□ -2
HCS1	YKL017C	YPL068C	Q02749	293 aa		2.55	□□□□□ -2
HCS1	YKL017C	SPO75	Q07798	868 aa		2.55	□□□□□ -2
HCS1	YKL017C	CLF1	Q12309	687 aa	Predicted RBP	2.55	□□□□□ -2
HCS1	YKL017C	DIF1	O13577	133 aa		2.54	□□□□□ -2
HCS1	YKL017C	STE12	P13574	688 aa		2.54	□□□□□ -2
HCS1	YKL017C	SWE1	P32944	819 aa		2.54	□□□□□ -2
HCS1	YKL017C	YMC2	P38087	329 aa		2.54	□□□□□ -2
HCS1	YKL017C	HXT16	P47185	567 aa		2.54	□□□□□ -2

Retrieved 100 of 5,963 RNA–protein pairs in 131.1 ms