RNA–Protein interactions for RNA: YDL229W

SSB1, Transcript of Cytoplasmic ATPase that is a ribosome-associated molecular chaperone, yeast

Gene SSB1, Length 1,842 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SSB1	YDL229W	GIM3	P53900	129 aa		4.56	□□□□□ -1.68
SSB1	YDL229W	KRE33	P53914	1056 aa	Known RBP	4.56	□□□□□ -1.68
SSB1	YDL229W	BUL2	Q03758	920 aa	Known RBP	4.56	□□□□□ -1.68
SSB1	YDL229W	VPS64	Q03944	604 aa		4.56	□□□□□ -1.68
SSB1	YDL229W	SPC24	Q04477	213 aa		4.56	□□□□□ -1.68
SSB1	YDL229W	EAF1	Q06337	982 aa		4.56	□□□□□ -1.68
SSB1	YDL229W	MCM21	Q06675	368 aa		4.56	□□□□□ -1.68
SSB1	YDL229W	TUS1	Q06412	1307 aa		4.55	□□□□□ -1.68
SSB1	YDL229W	GDB1	Q06625	1536 aa		4.55	□□□□□ -1.68
SSB1	YDL229W	RPC40	P07703	335 aa	Known RBP	4.55	□□□□□ -1.68
SSB1	YDL229W	HO	P09932	586 aa		4.55	□□□□□ -1.68
SSB1	YDL229W	LAT1	P12695	482 aa	Known RBP	4.55	□□□□□ -1.68
SSB1	YDL229W	KSS1	P14681	368 aa		4.55	□□□□□ -1.68
SSB1	YDL229W	TAL1	P15019	335 aa	Known RBP	4.55	□□□□□ -1.68
SSB1	YDL229W	IME1	P21190	360 aa		4.55	□□□□□ -1.68
SSB1	YDL229W	SPB1	P25582	841 aa	Predicted RBP	4.55	□□□□□ -1.68
SSB1	YDL229W	NTG1	P31378	399 aa		4.55	□□□□□ -1.68
SSB1	YDL229W	HXT3	P32466	567 aa	Known RBP	4.55	□□□□□ -1.68
SSB1	YDL229W	PDB1	P32473	366 aa	Known RBP	4.55	□□□□□ -1.68
SSB1	YDL229W	VMA8	P32610	256 aa	Known RBP	4.55	□□□□□ -1.68
SSB1	YDL229W	YKL100C	P34248	587 aa		4.55	□□□□□ -1.68
SSB1	YDL229W	RRN3	P36070	627 aa		4.55	□□□□□ -1.68
SSB1	YDL229W	SMF2	P38778	549 aa		4.55	□□□□□ -1.68
SSB1	YDL229W	LIN1	P38852	340 aa	Predicted RBP	4.55	□□□□□ -1.68
SSB1	YDL229W	SPT8	P38915	602 aa		4.55	□□□□□ -1.68
SSB1	YDL229W	LSB1	P53281	241 aa		4.55	□□□□□ -1.68
SSB1	YDL229W	CIK1	Q01649	594 aa		4.55	□□□□□ -1.68
SSB1	YDL229W	TBF1	Q02457	562 aa		4.55	□□□□□ -1.68
SSB1	YDL229W	RRN5	Q02983	363 aa		4.55	□□□□□ -1.68
SSB1	YDL229W	VPS16	Q03308	798 aa		4.55	□□□□□ -1.68
SSB1	YDL229W	PPM1	Q04081	328 aa		4.55	□□□□□ -1.68
SSB1	YDL229W	YOR378W	Q08902	515 aa		4.55	□□□□□ -1.68
SSB1	YDL229W	YPR022C	Q12139	1133 aa		4.55	□□□□□ -1.68
SSB1	YDL229W	HAT1	Q12341	374 aa		4.55	□□□□□ -1.68
SSB1	YDL229W	SRN2	Q99176	213 aa		4.55	□□□□□ -1.68
SSB1	YDL229W	YBT1	P32386	1661 aa		4.55	□□□□□ -1.68
SSB1	YDL229W	CAT8	P39113	1433 aa		4.54	□□□□□ -1.68
SSB1	YDL229W	PBS2	P08018	668 aa		4.54	□□□□□ -1.68
SSB1	YDL229W	TRL1	P09880	827 aa	Known RBP	4.54	□□□□□ -1.68
SSB1	YDL229W	GPA2	P10823	449 aa		4.54	□□□□□ -1.68
SSB1	YDL229W	SRS2	P12954	1174 aa		4.54	□□□□□ -1.68
SSB1	YDL229W	MSD1	P15179	658 aa	Known RBP	4.54	□□□□□ -1.68
SSB1	YDL229W	DBP3	P20447	523 aa	Known RBP	4.54	□□□□□ -1.68
SSB1	YDL229W	PPQ1	P32945	549 aa		4.54	□□□□□ -1.68
SSB1	YDL229W	CNS1	P33313	385 aa		4.54	□□□□□ -1.68
SSB1	YDL229W	YKT6	P36015	200 aa	Known RBP	4.54	□□□□□ -1.68
SSB1	YDL229W	YPT52	P36018	234 aa	Known RBP	4.54	□□□□□ -1.68
SSB1	YDL229W	DBP7	P36120	742 aa	Known RBP	4.54	□□□□□ -1.68
SSB1	YDL229W	TYS1	P36421	394 aa	Known RBP	4.54	□□□□□ -1.68
SSB1	YDL229W	STV1	P37296	890 aa		4.54	□□□□□ -1.68
SSB1	YDL229W	SAW1	P39735	261 aa		4.54	□□□□□ -1.68
SSB1	YDL229W	NDE1	P40215	560 aa		4.54	□□□□□ -1.68
SSB1	YDL229W	JEM1	P40358	645 aa		4.54	□□□□□ -1.68
SSB1	YDL229W	SPO22	P40511	975 aa		4.54	□□□□□ -1.68
SSB1	YDL229W	TED1	P40533	473 aa		4.54	□□□□□ -1.68
SSB1	YDL229W	YIL001W	P40560	513 aa		4.54	□□□□□ -1.68
SSB1	YDL229W	RTS2	P40962	232 aa		4.54	□□□□□ -1.68
SSB1	YDL229W	STB2	P46679	850 aa		4.54	□□□□□ -1.68
SSB1	YDL229W	YJR039W	P47107	1121 aa		4.54	□□□□□ -1.68
SSB1	YDL229W	ABM1	P47146	123 aa		4.54	□□□□□ -1.68
SSB1	YDL229W	TEL2	P53038	688 aa		4.54	□□□□□ -1.68
SSB1	YDL229W	MNP1	P53163	194 aa	Predicted RBP	4.54	□□□□□ -1.68
SSB1	YDL229W	OKP1	P53298	406 aa		4.54	□□□□□ -1.68
SSB1	YDL229W	RET3	P53600	189 aa		4.54	□□□□□ -1.68
SSB1	YDL229W	NCS2	P53923	493 aa	Predicted RBP	4.54	□□□□□ -1.68
SSB1	YDL229W	HEF3	P53978	1044 aa	Known RBP	4.54	□□□□□ -1.68
SSB1	YDL229W	SLT2	Q00772	484 aa		4.54	□□□□□ -1.68
SSB1	YDL229W	PTA1	Q01329	785 aa	Predicted RBP	4.54	□□□□□ -1.68
SSB1	YDL229W	SLU7	Q02775	382 aa	Known RBP	4.54	□□□□□ -1.68
SSB1	YDL229W	YMR114C	Q04471	368 aa	Known RBP	4.54	□□□□□ -1.68
SSB1	YDL229W	SFH1	Q06168	426 aa		4.54	□□□□□ -1.68
SSB1	YDL229W	ESF1	Q06344	628 aa	Known RBP	4.54	□□□□□ -1.68
SSB1	YDL229W	DXO1	Q06349	442 aa		4.54	□□□□□ -1.68
SSB1	YDL229W	PUF3	Q07807	879 aa	Known RBP RIP-Chip data	4.54	□□□□□ -1.68	not detected
SSB1	YDL229W	TYW1	Q08960	810 aa	Known RBP	4.54	□□□□□ -1.68
SSB1	YDL229W	THP3	Q12049	470 aa	Known RBP	4.54	□□□□□ -1.68
SSB1	YDL229W	ATG9	Q12142	997 aa		4.54	□□□□□ -1.68
SSB1	YDL229W	MPD2	Q99316	277 aa		4.54	□□□□□ -1.68
SSB1	YDL229W	TRP3	P00937	484 aa		4.53	□□□□□ -1.68
SSB1	YDL229W	PRE10	P21242	288 aa	Known RBP RIP-Chip data	4.53	□□□□□ -1.68	not detected
SSB1	YDL229W	REB1	P21538	810 aa		4.53	□□□□□ -1.68
SSB1	YDL229W	URE2	P23202	354 aa	Known RBP	4.53	□□□□□ -1.68
SSB1	YDL229W	YCR016W	P25617	290 aa	Known RBP	4.53	□□□□□ -1.68
SSB1	YDL229W	HSP30	P25619	332 aa		4.53	□□□□□ -1.68
SSB1	YDL229W	NOP4	P37838	685 aa	Known RBP	4.53	□□□□□ -1.68
SSB1	YDL229W	COS111	P38308	924 aa		4.53	□□□□□ -1.68
SSB1	YDL229W	CBR1	P38626	284 aa	Known RBP	4.53	□□□□□ -1.68
SSB1	YDL229W	LSM12	P38828	187 aa	Known RBP	4.53	□□□□□ -1.68
SSB1	YDL229W	YHR131C	P38835	850 aa		4.53	□□□□□ -1.68
SSB1	YDL229W	UTP9	P38882	575 aa	Known RBP	4.53	□□□□□ -1.68
SSB1	YDL229W	PIK1	P39104	1066 aa		4.53	□□□□□ -1.68
SSB1	YDL229W	RCY1	P39531	840 aa		4.53	□□□□□ -1.68
SSB1	YDL229W	VPS8	P39702	1274 aa		4.53	□□□□□ -1.68
SSB1	YDL229W	JLP2	P40206	208 aa		4.53	□□□□□ -1.68
SSB1	YDL229W	TOK1	P40310	691 aa		4.53	□□□□□ -1.68
SSB1	YDL229W	RRT14	P40470	206 aa		4.53	□□□□□ -1.68
SSB1	YDL229W	PKP1	P40530	394 aa		4.53	□□□□□ -1.68
SSB1	YDL229W	INA22	P40576	216 aa		4.53	□□□□□ -1.68
SSB1	YDL229W	TOM22	P49334	152 aa		4.53	□□□□□ -1.68
SSB1	YDL229W	SQS1	P53866	767 aa	Known RBP	4.53	□□□□□ -1.68

Retrieved 100 of 5,963 RNA–protein pairs in 19.3 ms