RNA–Protein interactions for RNA: YMR304W

UBP15, Transcript of Ubiquitin-specific protease involved in protein deubiquitination, yeast

Gene UBP15, Length 3,693 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBP15	YMR304W	UBP15	P50101	1230 aa		2.67	□□□□□ -1.98
UBP15	YMR304W	MET13	P53128	600 aa		2.67	□□□□□ -1.98
UBP15	YMR304W	COP1	P53622	1201 aa	Known RBP	2.67	□□□□□ -1.98
UBP15	YMR304W	DSE3	Q08729	430 aa		2.67	□□□□□ -1.98
UBP15	YMR304W	YOR352W	Q08816	343 aa		2.67	□□□□□ -1.98
UBP15	YMR304W	HTZ1	Q12692	134 aa	Known RBP	2.67	□□□□□ -1.98
UBP15	YMR304W	MSS116	P15424	664 aa	Known RBP	2.67	□□□□□ -1.98
UBP15	YMR304W	TFC4	P33339	1025 aa		2.67	□□□□□ -1.98
UBP15	YMR304W	UTP11	P34247	250 aa	Predicted RBP	2.67	□□□□□ -1.98
UBP15	YMR304W	MCD4	P36051	919 aa		2.67	□□□□□ -1.98
UBP15	YMR304W	RXT2	P38255	430 aa		2.67	□□□□□ -1.98
UBP15	YMR304W	OSH7	P38755	437 aa		2.67	□□□□□ -1.98
UBP15	YMR304W	POL5	P39985	1022 aa	Known RBP	2.67	□□□□□ -1.98
UBP15	YMR304W	ATG3	P40344	310 aa		2.67	□□□□□ -1.98
UBP15	YMR304W	SPO74	P45819	413 aa		2.67	□□□□□ -1.98
UBP15	YMR304W	YGL140C	P53120	1219 aa		2.67	□□□□□ -1.98
UBP15	YMR304W	HOS3	Q02959	697 aa	Known RBP	2.67	□□□□□ -1.98
UBP15	YMR304W	PKH1	Q03407	766 aa		2.67	□□□□□ -1.98
UBP15	YMR304W	PDR8	Q06149	701 aa		2.67	□□□□□ -1.98
UBP15	YMR304W	YPR117W	Q06116	2489 aa		2.67	□□□□□ -1.98
UBP15	YMR304W	HNM1	P19807	563 aa		2.66	□□□□□ -1.98
UBP15	YMR304W	MRP8	P35719	219 aa		2.66	□□□□□ -1.98
UBP15	YMR304W	SPC42	P36094	363 aa		2.66	□□□□□ -1.98
UBP15	YMR304W	CSM2	P40465	213 aa		2.66	□□□□□ -1.98
UBP15	YMR304W	YIL001W	P40560	513 aa		2.66	□□□□□ -1.98
UBP15	YMR304W	ALA1	P40825	983 aa	Known RBP	2.66	□□□□□ -1.98
UBP15	YMR304W	BIR1	P47134	954 aa		2.66	□□□□□ -1.98
UBP15	YMR304W	YNR063W	P53749	607 aa		2.66	□□□□□ -1.98
UBP15	YMR304W	INA17	Q02888	182 aa		2.66	□□□□□ -1.98
UBP15	YMR304W	HPF1	Q05164	967 aa		2.66	□□□□□ -1.98
UBP15	YMR304W	SSF2	Q12153	453 aa	Predicted RBP	2.66	□□□□□ -1.98
UBP15	YMR304W	MBR1	P23493	339 aa		2.66	□□□□□ -1.98
UBP15	YMR304W	APL2	P36000	726 aa	Predicted RBP	2.66	□□□□□ -1.98
UBP15	YMR304W	DAS1	P47005	663 aa		2.66	□□□□□ -1.98
UBP15	YMR304W	YGL082W	P53155	381 aa		2.66	□□□□□ -1.98
UBP15	YMR304W	BSC5	P53755	489 aa		2.66	□□□□□ -1.98
UBP15	YMR304W	SNZ1	Q03148	297 aa		2.66	□□□□□ -1.98
UBP15	YMR304W	NOC3	Q07896	663 aa	Predicted RBP	2.66	□□□□□ -1.98
UBP15	YMR304W	CDC19	P00549	500 aa	Known RBP	2.66	□□□□□ -1.98
UBP15	YMR304W	PHR1	P05066	565 aa	Known RBP RIP-Chip data	2.66	□□□□□ -1.98	not detected
UBP15	YMR304W	RDS2	P19541	446 aa	Known RBP	2.66	□□□□□ -1.98
UBP15	YMR304W	IME1	P21190	360 aa		2.66	□□□□□ -1.98
UBP15	YMR304W	DIT1	P21623	536 aa		2.66	□□□□□ -1.98
UBP15	YMR304W	ITR1	P30605	584 aa		2.66	□□□□□ -1.98
UBP15	YMR304W	MET18	P40469	1032 aa		2.66	□□□□□ -1.98
UBP15	YMR304W	ZIM17	P42844	174 aa		2.66	□□□□□ -1.98
UBP15	YMR304W	ALG2	P43636	503 aa		2.66	□□□□□ -1.98
UBP15	YMR304W	SHE4	P51534	789 aa		2.66	□□□□□ -1.98
UBP15	YMR304W	ARI1	P53111	347 aa	Known RBP	2.66	□□□□□ -1.98
UBP15	YMR304W	YLR177W	Q06251	628 aa		2.66	□□□□□ -1.98
UBP15	YMR304W	MAG2	Q06436	670 aa	Known RBP	2.66	□□□□□ -1.98
UBP15	YMR304W	FLO11	P08640	1367 aa		2.66	□□□□□ -1.98
UBP15	YMR304W	ENO2	P00925	437 aa	Known RBP	2.65	□□□□□ -1.98
UBP15	YMR304W	FUB1	P25659	250 aa		2.65	□□□□□ -1.98
UBP15	YMR304W	KRE2	P27809	442 aa		2.65	□□□□□ -1.98
UBP15	YMR304W	MUD2	P36084	527 aa	Known RBP	2.65	□□□□□ -1.98
UBP15	YMR304W	OSH3	P38713	996 aa	Known RBP	2.65	□□□□□ -1.98
UBP15	YMR304W	RIM4	P38741	713 aa		2.65	□□□□□ -1.98
UBP15	YMR304W	HXT6	P39003	570 aa	Known RBP	2.65	□□□□□ -1.98
UBP15	YMR304W	HXT7	P39004	570 aa		2.65	□□□□□ -1.98
UBP15	YMR304W	CAJ1	P39101	391 aa		2.65	□□□□□ -1.98
UBP15	YMR304W	HER2	Q03557	464 aa		2.65	□□□□□ -1.98
UBP15	YMR304W	MTC5	Q03897	1148 aa		2.65	□□□□□ -1.98
UBP15	YMR304W	RVB1	Q03940	463 aa	Known RBP	2.65	□□□□□ -1.98
UBP15	YMR304W	SND1	Q04007	877 aa		2.65	□□□□□ -1.98
UBP15	YMR304W	RSC3	Q06639	885 aa		2.65	□□□□□ -1.98
UBP15	YMR304W	BRE1	Q07457	700 aa	Known RBP	2.65	□□□□□ -1.98
UBP15	YMR304W	TRE1	Q08919	783 aa		2.65	□□□□□ -1.98
UBP15	YMR304W	WTM2	Q12206	467 aa		2.65	□□□□□ -1.98
UBP15	YMR304W	TRX1	P22217	103 aa	Known RBP	2.65	□□□□□ -1.99
UBP15	YMR304W	PUP2	P32379	260 aa		2.65	□□□□□ -1.99
UBP15	YMR304W	YKL063C	P35725	167 aa		2.65	□□□□□ -1.99
UBP15	YMR304W	KES1	P35844	434 aa	Known RBP	2.65	□□□□□ -1.99
UBP15	YMR304W	AHP1	P38013	176 aa	Known RBP	2.65	□□□□□ -1.99
UBP15	YMR304W	BAP2	P38084	609 aa		2.65	□□□□□ -1.99
UBP15	YMR304W	EXO84	P38261	753 aa		2.65	□□□□□ -1.99
UBP15	YMR304W	ARP1	P38696	384 aa		2.65	□□□□□ -1.99
UBP15	YMR304W	DSN1	P40568	576 aa		2.65	□□□□□ -1.99
UBP15	YMR304W	SEC26	P41810	973 aa	Known RBP	2.65	□□□□□ -1.99
UBP15	YMR304W	RET3	P53600	189 aa		2.65	□□□□□ -1.99
UBP15	YMR304W	IST1	P53843	298 aa	Predicted RBP	2.65	□□□□□ -1.99
UBP15	YMR304W	DSL1	P53847	754 aa		2.65	□□□□□ -1.99
UBP15	YMR304W	ORC4	P54791	529 aa		2.65	□□□□□ -1.99
UBP15	YMR304W	RSM24	Q03976	319 aa		2.65	□□□□□ -1.99
UBP15	YMR304W	ERB1	Q04660	807 aa	Known RBP	2.65	□□□□□ -1.99
UBP15	YMR304W	RAD2	P07276	1031 aa		2.65	□□□□□ -1.99
UBP15	YMR304W	SPE2	P21182	396 aa		2.65	□□□□□ -1.99
UBP15	YMR304W	PLC1	P32383	869 aa		2.65	□□□□□ -1.99
UBP15	YMR304W	TIF3	P34167	436 aa	Known RBP	2.65	□□□□□ -1.99
UBP15	YMR304W	SLX1	P38324	304 aa		2.65	□□□□□ -1.99
UBP15	YMR304W	NDC80	P40460	691 aa		2.65	□□□□□ -1.99
UBP15	YMR304W	STB1	P42845	420 aa		2.65	□□□□□ -1.99
UBP15	YMR304W	SUM1	P46676	1062 aa		2.65	□□□□□ -1.99
UBP15	YMR304W	PIB2	P53191	635 aa		2.65	□□□□□ -1.99
UBP15	YMR304W	RNT1	Q02555	471 aa		2.65	□□□□□ -1.99
UBP15	YMR304W	SEN54	Q02825	467 aa	Predicted RBP	2.65	□□□□□ -1.99
UBP15	YMR304W	NAB6	Q03735	1134 aa	Known RBP RIP-Chip data	2.65	□□□□□ -1.99	not detected
UBP15	YMR304W	STE12	P13574	688 aa		2.64	□□□□□ -1.99
UBP15	YMR304W	DPH2	P32461	534 aa		2.64	□□□□□ -1.99
UBP15	YMR304W	OTU2	P38747	307 aa	Known RBP	2.64	□□□□□ -1.99

Retrieved 100 of 5,963 RNA–protein pairs in 12.4 ms