RNA–Protein interactions for RNA: YLR058C

SHM2, Transcript of Cytosolic serine hydroxymethyltransferase, yeast

Gene SHM2, Length 1,410 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SHM2	YLR058C	KIP1	P28742	1111 aa		11.25	□□□□□ -0.61
SHM2	YLR058C	RAD54	P32863	898 aa		11.25	□□□□□ -0.61
SHM2	YLR058C	KIC1	P38692	1080 aa		11.25	□□□□□ -0.61
SHM2	YLR058C	YAP1801	P38856	637 aa		11.25	□□□□□ -0.61
SHM2	YLR058C	SHQ1	P40486	507 aa	Predicted RBP	11.25	□□□□□ -0.61
SHM2	YLR058C	LAM5	P43560	674 aa		11.25	□□□□□ -0.61
SHM2	YLR058C	ULI1	P43604	169 aa		11.25	□□□□□ -0.61
SHM2	YLR058C	YNL134C	P53912	376 aa	Known RBP	11.25	□□□□□ -0.61
SHM2	YLR058C	YNL115C	P53925	644 aa		11.25	□□□□□ -0.61
SHM2	YLR058C	CTR9	P89105	1077 aa		11.25	□□□□□ -0.61
SHM2	YLR058C	FMP30	Q02883	468 aa		11.25	□□□□□ -0.61
SHM2	YLR058C	CEF1	Q03654	590 aa	Predicted RBP	11.25	□□□□□ -0.61
SHM2	YLR058C	VPS38	Q05919	439 aa		11.25	□□□□□ -0.61
SHM2	YLR058C	PCD1	Q12524	340 aa		11.25	□□□□□ -0.61
SHM2	YLR058C	TAO3	P40468	2376 aa		11.24	□□□□□ -0.61
SHM2	YLR058C	RPT1	P33299	467 aa	Known RBP	11.24	□□□□□ -0.61
SHM2	YLR058C	UBX7	P38349	436 aa		11.24	□□□□□ -0.61
SHM2	YLR058C	SMC2	P38989	1170 aa	Known RBP	11.24	□□□□□ -0.61
SHM2	YLR058C	DAS1	P47005	663 aa		11.24	□□□□□ -0.61
SHM2	YLR058C	ESBP6	P53918	673 aa		11.24	□□□□□ -0.61
SHM2	YLR058C	IWR1	Q07532	353 aa	Predicted RBP	11.24	□□□□□ -0.61
SHM2	YLR058C	GIS3	Q12418	502 aa		11.24	□□□□□ -0.61
SHM2	YLR058C	ASP3-2	P0CX77	362 aa		11.23	□□□□□ -0.61
SHM2	YLR058C	ASP3-3	P0CX78	362 aa		11.23	□□□□□ -0.61
SHM2	YLR058C	ASP3-4	P0CX79	362 aa		11.23	□□□□□ -0.61
SHM2	YLR058C	ASP3-1	P0CZ17	362 aa		11.23	□□□□□ -0.61
SHM2	YLR058C	CDC42	P19073	191 aa		11.23	□□□□□ -0.61
SHM2	YLR058C	FUB1	P25659	250 aa		11.23	□□□□□ -0.61
SHM2	YLR058C	CBF2	P32504	956 aa		11.23	□□□□□ -0.61
SHM2	YLR058C	BUD2	P33314	1104 aa		11.23	□□□□□ -0.61
SHM2	YLR058C	TRM2	P33753	639 aa		11.23	□□□□□ -0.61
SHM2	YLR058C	MMM1	P41800	426 aa		11.23	□□□□□ -0.61
SHM2	YLR058C	SMC3	P47037	1230 aa		11.23	□□□□□ -0.61
SHM2	YLR058C	CPR7	P47103	393 aa		11.23	□□□□□ -0.61
SHM2	YLR058C	GCV2	P49095	1034 aa		11.23	□□□□□ -0.61
SHM2	YLR058C	ALF1	P53904	254 aa		11.23	□□□□□ -0.61
SHM2	YLR058C	YML082W	Q04533	649 aa	Known RBP	11.23	□□□□□ -0.61
SHM2	YLR058C	SGT2	Q12118	346 aa	Known RBP	11.23	□□□□□ -0.61
SHM2	YLR058C	MTF2	P10849	440 aa		11.22	□□□□□ -0.61
SHM2	YLR058C	AVT3	P36062	692 aa		11.22	□□□□□ -0.61
SHM2	YLR058C	PTC4	P38089	393 aa		11.22	□□□□□ -0.61
SHM2	YLR058C	YER186C	P40101	306 aa		11.22	□□□□□ -0.61
SHM2	YLR058C	ISM1	P48526	1002 aa		11.22	□□□□□ -0.61
SHM2	YLR058C	CLA4	P48562	842 aa		11.22	□□□□□ -0.61
SHM2	YLR058C	PPM1	Q04081	328 aa		11.22	□□□□□ -0.61
SHM2	YLR058C	UTP5	Q04177	643 aa	Known RBP	11.22	□□□□□ -0.61
SHM2	YLR058C	JNM1	P36224	373 aa		11.21	□□□□□ -0.61
SHM2	YLR058C	YHL026C	P38740	315 aa		11.21	□□□□□ -0.61
SHM2	YLR058C	CCC2	P38995	1004 aa		11.21	□□□□□ -0.61
SHM2	YLR058C	ALG11	P53954	548 aa	Known RBP	11.21	□□□□□ -0.61
SHM2	YLR058C	CWC21	Q03375	135 aa	Known RBP	11.21	□□□□□ -0.61
SHM2	YLR058C	YOL098C	Q12496	1037 aa		11.21	□□□□□ -0.61
SHM2	YLR058C	TRP2	P00899	507 aa	Known RBP	11.2	□□□□□ -0.62
SHM2	YLR058C	SCJ1	P25303	377 aa		11.2	□□□□□ -0.62
SHM2	YLR058C	GRS1	P38088	690 aa	Known RBP	11.2	□□□□□ -0.62
SHM2	YLR058C	BRL1	P38770	471 aa		11.2	□□□□□ -0.62
SHM2	YLR058C	FIR1	P40020	876 aa		11.2	□□□□□ -0.62
SHM2	YLR058C	VPS70	P47161	811 aa		11.2	□□□□□ -0.62
SHM2	YLR058C	OPY2	Q06810	360 aa		11.2	□□□□□ -0.62
SHM2	YLR058C	ABP140	Q08641	628 aa	Known RBP	11.2	□□□□□ -0.62
SHM2	YLR058C	OSH2	Q12451	1283 aa		11.2	□□□□□ -0.62
SHM2	YLR058C	DAL2	P25335	343 aa		11.19	□□□□□ -0.62
SHM2	YLR058C	RRT12	P25381	491 aa		11.19	□□□□□ -0.62
SHM2	YLR058C	TRZ1	P36159	838 aa	Predicted RBP	11.19	□□□□□ -0.62
SHM2	YLR058C	HXT8	P40886	569 aa		11.19	□□□□□ -0.62
SHM2	YLR058C	YFL040W	P43562	540 aa		11.19	□□□□□ -0.62
SHM2	YLR058C	STE20	Q03497	939 aa	Known RBP	11.19	□□□□□ -0.62
SHM2	YLR058C	TSR1	Q07381	788 aa	Known RBP	11.19	□□□□□ -0.62
SHM2	YLR058C	PUS1	Q12211	544 aa	Known RBP	11.19	□□□□□ -0.62
SHM2	YLR058C	CDC33	P07260	213 aa	Known RBP	11.18	□□□□□ -0.62
SHM2	YLR058C	SEC23	P15303	768 aa	Known RBP	11.18	□□□□□ -0.62
SHM2	YLR058C	COX11	P19516	300 aa	Known RBP	11.18	□□□□□ -0.62
SHM2	YLR058C	YHR054C	P38780	354 aa		11.18	□□□□□ -0.62
SHM2	YLR058C	STU2	P46675	888 aa		11.18	□□□□□ -0.62
SHM2	YLR058C	JSN1	P47135	1091 aa	Known RBP RIP-Chip data	11.18	□□□□□ -0.62	not detected
SHM2	YLR058C	ALT2	P52892	507 aa		11.18	□□□□□ -0.62
SHM2	YLR058C	YGR035C	P53222	116 aa		11.18	□□□□□ -0.62
SHM2	YLR058C	SNU56	Q03782	492 aa	Known RBP	11.18	□□□□□ -0.62
SHM2	YLR058C	YOR022C	Q12204	715 aa		11.18	□□□□□ -0.62
SHM2	YLR058C	SPT2	P06843	333 aa	Predicted RBP	11.18	□□□□□ -0.62
SHM2	YLR058C	RAD57	P25301	460 aa		11.18	□□□□□ -0.62
SHM2	YLR058C	RSA4	P25382	515 aa	Known RBP	11.18	□□□□□ -0.62
SHM2	YLR058C	CSE2	P33308	149 aa		11.18	□□□□□ -0.62
SHM2	YLR058C	STO1	P34160	861 aa	Known RBP	11.18	□□□□□ -0.62
SHM2	YLR058C	CSG2	P35206	410 aa		11.18	□□□□□ -0.62
SHM2	YLR058C	POA1	P38218	177 aa		11.18	□□□□□ -0.62
SHM2	YLR058C	SEC9	P40357	651 aa		11.18	□□□□□ -0.62
SHM2	YLR058C	SBE2	P42223	864 aa	Known RBP	11.18	□□□□□ -0.62
SHM2	YLR058C	SPO74	P45819	413 aa		11.18	□□□□□ -0.62
SHM2	YLR058C	FOL2	P51601	243 aa	Known RBP	11.18	□□□□□ -0.62
SHM2	YLR058C	MAG2	Q06436	670 aa	Known RBP	11.18	□□□□□ -0.62
SHM2	YLR058C	CDD1	Q06549	142 aa		11.18	□□□□□ -0.62
SHM2	YLR058C	ECM3	Q99252	613 aa		11.18	□□□□□ -0.62
SHM2	YLR058C	AI5_BETA	Q9ZZX0	354 aa		11.18	□□□□□ -0.62
SHM2	YLR058C	CAD1	P24813	409 aa	Known RBP	11.17	□□□□□ -0.62
SHM2	YLR058C	YMR124W	P39523	943 aa	Known RBP	11.17	□□□□□ -0.62
SHM2	YLR058C	SAH1	P39954	449 aa	Known RBP	11.17	□□□□□ -0.62
SHM2	YLR058C	EFM4	P40516	257 aa		11.17	□□□□□ -0.62
SHM2	YLR058C	DRN1	P53255	507 aa	Known RBP	11.17	□□□□□ -0.62
SHM2	YLR058C	DNL4	Q08387	944 aa	Predicted RBP	11.17	□□□□□ -0.62

Retrieved 100 of 5,963 RNA–protein pairs in 30.6 ms