RNA–Protein interactions for RNA: LSR1

LSR1, Transcript of U2 spliceosomal RNA (U2 snRNA), component of the spliceosome, yeastyeast

Gene LSR1, Length 1,175 nt, Biotype snRNA.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
LSR1LSR1 NCL1P38205 684 aaKnown RBP9.25□□□□□ -0.93
LSR1LSR1 ECM2P38241 364 aaKnown RBP9.25□□□□□ -0.93
LSR1LSR1 ERC1P38767 581 aa9.25□□□□□ -0.93
LSR1LSR1 SAK1P38990 1142 aa9.25□□□□□ -0.93
LSR1LSR1 END3P39013 349 aa9.25□□□□□ -0.93
LSR1LSR1 PSY2P40164 858 aa9.25□□□□□ -0.93
LSR1LSR1 TAM41P53230 385 aa9.25□□□□□ -0.93
LSR1LSR1 RPL22BP56628 122 aaKnown RBP9.25□□□□□ -0.93
LSR1LSR1 UTP6Q02354 440 aaKnown RBP9.25□□□□□ -0.93
LSR1LSR1 GUD1Q07729 489 aa9.25□□□□□ -0.93
LSR1LSR1 CDC53Q12018 815 aaKnown RBP9.25□□□□□ -0.93
LSR1LSR1 SLX4Q12098 748 aa9.25□□□□□ -0.93
LSR1LSR1 MSM1P22438 575 aa9.24□□□□□ -0.93
LSR1LSR1 PUF4P25339 888 aaKnown RBP RIP-Chip data9.24□□□□□ -0.93not detected
LSR1LSR1 PDB1P32473 366 aaKnown RBP9.24□□□□□ -0.93
LSR1LSR1 LOS1P33418 1100 aaPredicted RBP9.24□□□□□ -0.93
LSR1LSR1 ACA1P39970 489 aa9.24□□□□□ -0.93
LSR1LSR1 PTA1Q01329 785 aaPredicted RBP9.24□□□□□ -0.93
LSR1LSR1 ADA2Q02336 434 aa9.24□□□□□ -0.93
LSR1LSR1 YML119WQ03208 357 aa9.24□□□□□ -0.93
LSR1LSR1 PRP3Q03338 469 aaPredicted RBP9.24□□□□□ -0.93
LSR1LSR1 YML037CQ03703 340 aa9.24□□□□□ -0.93
LSR1LSR1 YDR222WQ04925 415 aa9.24□□□□□ -0.93
LSR1LSR1 MPC54Q08550 464 aa9.24□□□□□ -0.93
LSR1LSR1 NCA2Q12374 616 aa9.24□□□□□ -0.93
LSR1LSR1 SEY1Q99287 776 aa9.24□□□□□ -0.93
LSR1LSR1 CDC33P07260 213 aaKnown RBP9.23□□□□□ -0.93
LSR1LSR1 KAR3P17119 729 aa9.23□□□□□ -0.93
LSR1LSR1 DBP5P20449 482 aaKnown RBP9.23□□□□□ -0.93
LSR1LSR1 ARG1P22768 420 aa9.23□□□□□ -0.93
LSR1LSR1 PSE1P32337 1089 aaKnown RBP9.23□□□□□ -0.93
LSR1LSR1 TFC4P33339 1025 aa9.23□□□□□ -0.93
LSR1LSR1 TIF5P38431 405 aaKnown RBP9.23□□□□□ -0.93
LSR1LSR1 SPC72P39723 622 aa9.23□□□□□ -0.93
LSR1LSR1 YTA12P40341 825 aa9.23□□□□□ -0.93
LSR1LSR1 ATG36P46983 293 aa9.23□□□□□ -0.93
LSR1LSR1 DUS4Q06063 367 aa9.23□□□□□ -0.93
LSR1LSR1 SPH1Q06160 661 aa9.23□□□□□ -0.93
LSR1LSR1 ATG20Q07528 640 aa9.23□□□□□ -0.93
LSR1LSR1 ACM1Q08981 209 aa9.23□□□□□ -0.93
LSR1LSR1 HIF1Q12373 385 aa9.23□□□□□ -0.93
LSR1LSR1 SEC39Q12745 709 aa9.23□□□□□ -0.93
LSR1LSR1 RPS9BP05755 195 aaKnown RBP9.22□□□□□ -0.93
LSR1LSR1 CBP1P07252 654 aa9.22□□□□□ -0.93
LSR1LSR1 GPI10P30777 616 aa9.22□□□□□ -0.93
LSR1LSR1 MUD1P32605 298 aaKnown RBP9.22□□□□□ -0.93
LSR1LSR1 PBP2P38151 413 aaKnown RBP RIP-Chip data9.22□□□□□ -0.93not detected
LSR1LSR1 YBR062CP38239 180 aa9.22□□□□□ -0.93
LSR1LSR1 NIT1P40447 199 aa9.22□□□□□ -0.93
LSR1LSR1 ASG1P40467 964 aa9.22□□□□□ -0.93
LSR1LSR1 INA22P40576 216 aa9.22□□□□□ -0.93
LSR1LSR1 CLA4P48562 842 aa9.22□□□□□ -0.93
LSR1LSR1 ATG1P53104 897 aa9.22□□□□□ -0.93
LSR1LSR1 ZPR1P53303 486 aaKnown RBP9.22□□□□□ -0.93
LSR1LSR1 TAF10Q12030 206 aa9.22□□□□□ -0.93
LSR1LSR1 PUS1Q12211 544 aaKnown RBP9.22□□□□□ -0.93
LSR1LSR1 SAM1P10659 382 aaKnown RBP9.21□□□□□ -0.94
LSR1LSR1 YBL055CP34220 418 aaPredicted RBP9.21□□□□□ -0.94
LSR1LSR1 PTC3P34221 468 aaKnown RBP9.21□□□□□ -0.94
LSR1LSR1 MSG5P38590 489 aa9.21□□□□□ -0.94
LSR1LSR1 YGR111WP53265 400 aa9.21□□□□□ -0.94
LSR1LSR1 YGR117CP53270 476 aa9.21□□□□□ -0.94
LSR1LSR1 CPR6P53691 371 aaKnown RBP9.21□□□□□ -0.94
LSR1LSR1 VPS72Q03388 795 aa9.21□□□□□ -0.94
LSR1LSR1 ATG16Q03818 150 aa9.21□□□□□ -0.94
LSR1LSR1 PPM1Q04081 328 aa9.21□□□□□ -0.94
LSR1LSR1 CRD1Q07560 283 aa9.21□□□□□ -0.94
LSR1LSR1 NOB1Q08444 459 aaKnown RBP9.21□□□□□ -0.94
LSR1LSR1 NCR1Q12200 1170 aa9.21□□□□□ -0.94
LSR1LSR1 YML002WP0CF17 737 aa9.2□□□□□ -0.94
LSR1LSR1 POL3P15436 1097 aa9.2□□□□□ -0.94
LSR1LSR1 CBF1P17106 351 aa9.2□□□□□ -0.94
LSR1LSR1 SRV2P17555 526 aaKnown RBP9.2□□□□□ -0.94
LSR1LSR1 HPR1P17629 752 aaKnown RBP9.2□□□□□ -0.94
LSR1LSR1 GAL11P19659 1081 aa9.2□□□□□ -0.94
LSR1LSR1 DBF4P32325 704 aa9.2□□□□□ -0.94
LSR1LSR1 NIP1P32497 812 aaKnown RBP9.2□□□□□ -0.94
LSR1LSR1 RRN6P32786 894 aa9.2□□□□□ -0.94
LSR1LSR1 TDA10P42938 290 aa9.2□□□□□ -0.94
LSR1LSR1 ILM1P47155 203 aa9.2□□□□□ -0.94
LSR1LSR1 SUB1P54000 292 aaKnown RBP9.2□□□□□ -0.94
LSR1LSR1 FAR8Q05040 523 aa9.2□□□□□ -0.94
LSR1LSR1 YLR177WQ06251 628 aa9.2□□□□□ -0.94
LSR1LSR1 PUF3Q07807 879 aaKnown RBP RIP-Chip data9.2□□□□□ -0.94not detected
LSR1LSR1 CMS1Q07897 291 aaKnown RBP9.2□□□□□ -0.94
LSR1LSR1 HEM15P16622 393 aa9.19□□□□□ -0.94
LSR1LSR1 CDC42P19073 191 aa9.19□□□□□ -0.94
LSR1LSR1 SFL1P20134 766 aa9.19□□□□□ -0.94
LSR1LSR1 SCJ1P25303 377 aa9.19□□□□□ -0.94
LSR1LSR1 DAL2P25335 343 aa9.19□□□□□ -0.94
LSR1LSR1 GLC3P32775 704 aa9.19□□□□□ -0.94
LSR1LSR1 RAD5P32849 1169 aaPredicted RBP9.19□□□□□ -0.94
LSR1LSR1 CBF5P33322 483 aaKnown RBP RIP-Chip data9.19□□□□□ -0.94not detected
LSR1LSR1 HEL1P36113 551 aa9.19□□□□□ -0.94
LSR1LSR1 VHC1P38329 1120 aa9.19□□□□□ -0.94
LSR1LSR1 PHO86P46956 311 aa9.19□□□□□ -0.94
LSR1LSR1 AVT1P47082 602 aa9.19□□□□□ -0.94
LSR1LSR1 SHR3Q02774 210 aa9.19□□□□□ -0.94
LSR1LSR1 ROD1Q02805 837 aa9.19□□□□□ -0.94
LSR1LSR1 DUS3Q06053 668 aaKnown RBP9.19□□□□□ -0.94
Retrieved 100 of 5,963 RNA–protein pairs in 44.6 ms