RNA–Protein interactions for RNA: ENST00000439453.5

HPS4-206, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 1 (best)

Gene HPS4, Length 3,936 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-206ENST00000439453 OSBPL3Q9H4L5 887 aa10.27□□□□□ -0.77
HPS4-206ENST00000439453 PALD1Q9ULE6 856 aa10.27□□□□□ -0.77
HPS4-206ENST00000439453 HEG1Q9ULI3 1381 aa10.27□□□□□ -0.77
HPS4-206ENST00000439453 HCLS1P14317 486 aaPredicted RBP10.27□□□□□ -0.77
HPS4-206ENST00000439453 LMOD3Q0VAK6 560 aa10.27□□□□□ -0.77
HPS4-206ENST00000439453 ESYT1Q9BSJ8 1104 aa10.27□□□□□ -0.77
HPS4-206ENST00000439453 CCNL1Q9UK58 526 aaPredicted RBP10.27□□□□□ -0.77
HPS4-206ENST00000439453 PSDA5PKW4 1024 aaPredicted RBP10.26□□□□□ -0.77
HPS4-206ENST00000439453 KDM4AO75164 1064 aa10.26□□□□□ -0.77
HPS4-206ENST00000439453 SPDYE4A6NLX3 237 aa10.26□□□□□ -0.77
HPS4-206ENST00000439453 MX1P20591 662 aa10.26□□□□□ -0.77
HPS4-206ENST00000439453 ANAPC15P60006 121 aa10.26□□□□□ -0.77
HPS4-206ENST00000439453 R3HDM1Q15032 1099 aaKnown RBP10.26□□□□□ -0.77
HPS4-206ENST00000439453 TMEM87AQ8NBN3 555 aa10.26□□□□□ -0.77
HPS4-206ENST00000439453 DIAPH3Q9NSV4 1193 aa10.26□□□□□ -0.77
HPS4-206ENST00000439453 UTRNP46939 3433 aa10.26□□□□□ -0.77
HPS4-206ENST00000439453 KIAA1551Q9HCM1 1747 aa10.26□□□□□ -0.77
HPS4-206ENST00000439453 PNPLA7Q6ZV29 1317 aa10.26□□□□□ -0.77
HPS4-206ENST00000439453 SMARCC1Q92922 1105 aaPredicted RBP10.26□□□□□ -0.77
HPS4-206ENST00000439453 MEIS3Q99687 375 aa10.26□□□□□ -0.77
HPS4-206ENST00000439453 SLC15A2Q16348 729 aa10.25□□□□□ -0.77
HPS4-206ENST00000439453 KRT24Q2M2I5 525 aa10.25□□□□□ -0.77
HPS4-206ENST00000439453 KIF13BQ9NQT8 1826 aa10.25□□□□□ -0.77
HPS4-206ENST00000439453 RIOK3O14730 519 aaKnown RBP10.25□□□□□ -0.77
HPS4-206ENST00000439453 KIAA1524Q8TCG1 905 aa10.25□□□□□ -0.77
HPS4-206ENST00000439453 CHAF1AQ13111 956 aaPredicted RBP10.25□□□□□ -0.77
HPS4-206ENST00000439453 ANKRD7Q92527 254 aa10.25□□□□□ -0.77
HPS4-206ENST00000439453 HMMRO75330 724 aa10.24□□□□□ -0.77
HPS4-206ENST00000439453 SRCIN1Q9C0H9 1055 aa10.24□□□□□ -0.77
HPS4-206ENST00000439453 SMIM5Q71RC9 77 aa10.24□□□□□ -0.77
HPS4-206ENST00000439453 ANO2Q9NQ90 1003 aa10.24□□□□□ -0.77
HPS4-206ENST00000439453 PYCARDQ9ULZ3 195 aa10.24□□□□□ -0.77
HPS4-206ENST00000439453 AFDNP55196 1824 aaKnown RBP10.24□□□□□ -0.77
HPS4-206ENST00000439453 PLCB2Q00722 1185 aa10.24□□□□□ -0.77
HPS4-206ENST00000439453 ZNF790Q6PG37 636 aa10.24□□□□□ -0.77
HPS4-206ENST00000439453 CNPY2Q9Y2B0 182 aa10.24□□□□□ -0.77
HPS4-206ENST00000439453 NRXN2Q9P2S2 1712 aa10.24□□□□□ -0.77
HPS4-206ENST00000439453 RPAP1Q9BWH6 1393 aaPredicted RBP10.24□□□□□ -0.77
HPS4-206ENST00000439453 U2AF2P26368 475 aaKnown RBP eCLIP10.23□□□□□ -0.771e-6■■□□□ 13.6
HPS4-206ENST00000439453 TPRNQ4KMQ1 711 aa10.23□□□□□ -0.77
HPS4-206ENST00000439453 UPF3BQ9BZI7 483 aaKnown RBP10.23□□□□□ -0.77
HPS4-206ENST00000439453 KCNF1Q9H3M0 494 aa10.23□□□□□ -0.77
HPS4-206ENST00000439453 TPM3P06753 285 aa10.23□□□□□ -0.77
HPS4-206ENST00000439453 TSHZ3Q63HK5 1081 aa10.23□□□□□ -0.77
HPS4-206ENST00000439453 PRAMEF22A3QJZ6 481 aa10.23□□□□□ -0.77
HPS4-206ENST00000439453 CTIFO43310 598 aaKnown RBP10.23□□□□□ -0.77
HPS4-206ENST00000439453 UBE2HP62256 183 aa10.23□□□□□ -0.77
HPS4-206ENST00000439453 IL17RAQ96F46 866 aa10.23□□□□□ -0.77
HPS4-206ENST00000439453 ZNF496Q96IT1 587 aaPredicted RBP10.23□□□□□ -0.77
HPS4-206ENST00000439453 CNTNAP4Q9C0A0 1308 aa10.22□□□□□ -0.77
HPS4-206ENST00000439453 CHMLP26374 656 aa10.22□□□□□ -0.77
HPS4-206ENST00000439453 INTS5Q6P9B9 1019 aaKnown RBP10.22□□□□□ -0.77
HPS4-206ENST00000439453 AP5Z1O43299 807 aa10.22□□□□□ -0.77
HPS4-206ENST00000439453 ATP6V1AP38606 617 aa10.22□□□□□ -0.77
HPS4-206ENST00000439453 MIS18AQ9NYP9 233 aa10.22□□□□□ -0.77
HPS4-206ENST00000439453 PTPRCP08575 1304 aa10.22□□□□□ -0.77
HPS4-206ENST00000439453 PTCD1O75127 700 aaKnown RBP10.22□□□□□ -0.77
HPS4-206ENST00000439453 SGIP1Q9BQI5 828 aa10.22□□□□□ -0.77
HPS4-206ENST00000439453 FUCA2Q9BTY2 467 aa10.22□□□□□ -0.77
HPS4-206ENST00000439453 NUP98P52948 1817 aa10.21□□□□□ -0.77
HPS4-206ENST00000439453 BTBD11A6QL63 1104 aa10.21□□□□□ -0.78
HPS4-206ENST00000439453 ZSCAN22P10073 491 aaPredicted RBP10.21□□□□□ -0.78
HPS4-206ENST00000439453 CYP19A1P11511 503 aaPredicted RBP10.21□□□□□ -0.78
HPS4-206ENST00000439453 FGD1P98174 961 aa10.21□□□□□ -0.78
HPS4-206ENST00000439453 FEZ1Q99689 392 aa10.21□□□□□ -0.78
HPS4-206ENST00000439453 SALL3Q9BXA9 1300 aa10.21□□□□□ -0.78
HPS4-206ENST00000439453 ANKRD36CQ5JPF3 1778 aa10.21□□□□□ -0.78
HPS4-206ENST00000439453 TEFQ10587 303 aa10.21□□□□□ -0.78
HPS4-206ENST00000439453 GIMAP6Q6P9H5 292 aa10.21□□□□□ -0.78
HPS4-206ENST00000439453 DNAJC10Q8IXB1 793 aa10.21□□□□□ -0.78
HPS4-206ENST00000439453 SPC24Q8NBT2 197 aa10.21□□□□□ -0.78
HPS4-206ENST00000439453 RILPL2Q969X0 211 aa10.21□□□□□ -0.78
HPS4-206ENST00000439453 GOLGA6L6A8MZA4 724 aa10.2□□□□□ -0.78
HPS4-206ENST00000439453 TRIM6-TRIM34B2RNG4 842 aa10.2□□□□□ -0.78
HPS4-206ENST00000439453 TAF7Q15545 349 aaPredicted RBP10.2□□□□□ -0.78
HPS4-206ENST00000439453 COL23A1Q86Y22 540 aaPredicted RBP10.2□□□□□ -0.78
HPS4-206ENST00000439453 BRCA1P38398 1863 aaKnown RBP10.2□□□□□ -0.78
HPS4-206ENST00000439453 KLHL34Q8N239 644 aa10.2□□□□□ -0.78
HPS4-206ENST00000439453 STK32BQ9NY57 414 aa10.2□□□□□ -0.78
HPS4-206ENST00000439453 EXOC6BQ9Y2D4 811 aa10.2□□□□□ -0.78
HPS4-206ENST00000439453 IGSF3O75054 1194 aa10.2□□□□□ -0.78
HPS4-206ENST00000439453 PTGER2P43116 358 aa10.2□□□□□ -0.78
HPS4-206ENST00000439453 RC3H1Q5TC82 1133 aaKnown RBP10.2□□□□□ -0.78
HPS4-206ENST00000439453 NBPF14Q5TI25 921 aa10.2□□□□□ -0.78
HPS4-206ENST00000439453 RTF1Q92541 710 aaKnown RBP10.2□□□□□ -0.78
HPS4-206ENST00000439453 OGFRQ9NZT2 677 aa10.2□□□□□ -0.78
HPS4-206ENST00000439453 FIBPO43427 364 aa10.19□□□□□ -0.78
HPS4-206ENST00000439453 CRKLP46109 303 aaKnown RBP10.19□□□□□ -0.78
HPS4-206ENST00000439453 EIF4A1P60842 406 aaKnown RBP10.19□□□□□ -0.78
HPS4-206ENST00000439453 CHL1O00533 1208 aa10.19□□□□□ -0.78
HPS4-206ENST00000439453 CDK11BP21127 795 aaKnown RBP10.19□□□□□ -0.78
HPS4-206ENST00000439453 LRRCC1Q9C099 1032 aa10.19□□□□□ -0.78
HPS4-206ENST00000439453 STX6O43752 255 aa10.19□□□□□ -0.78
HPS4-206ENST00000439453 F13A1P00488 732 aa10.18□□□□□ -0.78
HPS4-206ENST00000439453 NCBP1Q09161 790 aaKnown RBP10.18□□□□□ -0.78
HPS4-206ENST00000439453 ANKRD31Q8N7Z5 1873 aa10.18□□□□□ -0.78
HPS4-206ENST00000439453 ARFGEF2Q9Y6D5 1785 aa10.18□□□□□ -0.78
HPS4-206ENST00000439453 SOS1Q07889 1333 aaPredicted RBP10.18□□□□□ -0.78
HPS4-206ENST00000439453 SYT1P21579 422 aa10.18□□□□□ -0.78
HPS4-206ENST00000439453 HSPA4P34932 840 aa10.18□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 56.2 ms