RNA–Protein interactions for RNA: ENST00000302516.9

SF3B3-201, Transcript of splicing factor 3b subunit 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B3, Length 9,720 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-201ENST00000302516 AFAP1Q8N556 730 aa8.72□□□□□ -1.01
SF3B3-201ENST00000302516 ZMYM3Q14202 1370 aa8.72□□□□□ -1.01
SF3B3-201ENST00000302516 RTL9Q8NET4 1388 aa8.72□□□□□ -1.01
SF3B3-201ENST00000302516 PARD3Q8TEW0 1356 aa8.72□□□□□ -1.01
SF3B3-201ENST00000302516 IARSP41252 1262 aaKnown RBP8.72□□□□□ -1.01
SF3B3-201ENST00000302516 RAB3GAP1Q15042 981 aa8.72□□□□□ -1.01
SF3B3-201ENST00000302516 DZIP1Q86YF9 867 aaKnown RBP8.72□□□□□ -1.01
SF3B3-201ENST00000302516 TTC41PQ6P2S7 1318 aa8.72□□□□□ -1.01
SF3B3-201ENST00000302516 ACTN2P35609 894 aa8.72□□□□□ -1.01
SF3B3-201ENST00000302516 B4GALNT4Q76KP1 1039 aa8.72□□□□□ -1.01
SF3B3-201ENST00000302516 NBPF11Q86T75 865 aa8.72□□□□□ -1.01
SF3B3-201ENST00000302516 SMC5Q8IY18 1101 aa8.72□□□□□ -1.01
SF3B3-201ENST00000302516 MKNK2Q9HBH9 465 aa8.72□□□□□ -1.01
SF3B3-201ENST00000302516 EBAG9O00559 213 aa8.72□□□□□ -1.01
SF3B3-201ENST00000302516 CCDC50Q8IVM0 306 aa8.72□□□□□ -1.01
SF3B3-201ENST00000302516 RBM5P52756 815 aaKnown RBP eCLIP8.72□□□□□ -1.01
SF3B3-201ENST00000302516 MFSD6Q6ZSS7 791 aa8.72□□□□□ -1.01
SF3B3-201ENST00000302516 DDX46Q7L014 1031 aaKnown RBP8.72□□□□□ -1.01
SF3B3-201ENST00000302516 HDXQ7Z353 690 aa8.72□□□□□ -1.01
SF3B3-201ENST00000302516 FERMT2Q96AC1 680 aa8.72□□□□□ -1.01
SF3B3-201ENST00000302516 A0A1W2PRG0 241 aa8.72□□□□□ -1.01
SF3B3-201ENST00000302516 IFIT3O14879 490 aaKnown RBP8.72□□□□□ -1.01
SF3B3-201ENST00000302516 POLR3DP05423 398 aaPredicted RBP8.72□□□□□ -1.01
SF3B3-201ENST00000302516 C20orf194Q5TEA3 1177 aa8.72□□□□□ -1.01
SF3B3-201ENST00000302516 NEK1Q96PY6 1258 aa8.72□□□□□ -1.01
SF3B3-201ENST00000302516 SOS1Q07889 1333 aaPredicted RBP8.72□□□□□ -1.01
SF3B3-201ENST00000302516 N4BP3O15049 544 aa8.71□□□□□ -1.01
SF3B3-201ENST00000302516 MYO1BO43795 1136 aa8.71□□□□□ -1.01
SF3B3-201ENST00000302516 SMARCA5O60264 1052 aaPredicted RBP8.71□□□□□ -1.01
SF3B3-201ENST00000302516 NLRP5P59047 1200 aa8.71□□□□□ -1.01
SF3B3-201ENST00000302516 ATP2A1O14983 1001 aa8.71□□□□□ -1.01
SF3B3-201ENST00000302516 HCLS1P14317 486 aaPredicted RBP8.71□□□□□ -1.01
SF3B3-201ENST00000302516 GPATCH11Q8N954 259 aa8.71□□□□□ -1.01
SF3B3-201ENST00000302516 INSRP06213 1382 aa8.71□□□□□ -1.01
SF3B3-201ENST00000302516 GRIN2AQ12879 1464 aa8.71□□□□□ -1.01
SF3B3-201ENST00000302516 SYT1P21579 422 aa8.71□□□□□ -1.01
SF3B3-201ENST00000302516 ATP5DP30049 168 aa8.71□□□□□ -1.01
SF3B3-201ENST00000302516 FLIIQ13045 1269 aa8.71□□□□□ -1.01
SF3B3-201ENST00000302516 TRAF1Q13077 416 aa8.71□□□□□ -1.01
SF3B3-201ENST00000302516 RSRC1Q96IZ7 334 aaKnown RBP8.71□□□□□ -1.01
SF3B3-201ENST00000302516 TRIM47Q96LD4 638 aa8.71□□□□□ -1.01
SF3B3-201ENST00000302516 BRAPQ7Z569 592 aa8.71□□□□□ -1.02
SF3B3-201ENST00000302516 ARFGAP2Q8N6H7 521 aa8.71□□□□□ -1.02
SF3B3-201ENST00000302516 TMEM67Q5HYA8 995 aa8.71□□□□□ -1.02
SF3B3-201ENST00000302516 NUDT16Q96DE0 195 aaKnown RBP8.71□□□□□ -1.02
SF3B3-201ENST00000302516 IQCGQ9H095 443 aaKnown RBP8.71□□□□□ -1.02
SF3B3-201ENST00000302516 BOLA2Q9H3K6 86 aa8.71□□□□□ -1.02
SF3B3-201ENST00000302516 HOMER2Q9NSB8 354 aa8.71□□□□□ -1.02
SF3B3-201ENST00000302516 VAV2P52735 878 aa8.71□□□□□ -1.02
SF3B3-201ENST00000302516 ZHX1Q9UKY1 873 aaPredicted RBP8.71□□□□□ -1.02
SF3B3-201ENST00000302516 KDM5BQ9UGL1 1544 aa8.71□□□□□ -1.02
SF3B3-201ENST00000302516 UHRF1BP1Q6BDS2 1440 aa8.71□□□□□ -1.02
SF3B3-201ENST00000302516 UBA7P41226 1012 aa8.71□□□□□ -1.02
SF3B3-201ENST00000302516 GSTO1P78417 241 aa8.71□□□□□ -1.02
SF3B3-201ENST00000302516 CLUL1Q15846 466 aa8.71□□□□□ -1.02
SF3B3-201ENST00000302516 TRIM14Q14142 442 aa8.7□□□□□ -1.02
SF3B3-201ENST00000302516 PPP1R14CQ8TAE6 165 aa8.7□□□□□ -1.02
SF3B3-201ENST00000302516 TMCO5BA8MYB1 307 aa8.7□□□□□ -1.02
SF3B3-201ENST00000302516 F13A1P00488 732 aa8.7□□□□□ -1.02
SF3B3-201ENST00000302516 DAAM2Q86T65 1068 aa8.7□□□□□ -1.02
SF3B3-201ENST00000302516 CNGA4Q8IV77 575 aa8.7□□□□□ -1.02
SF3B3-201ENST00000302516 TMX3Q96JJ7 454 aa8.7□□□□□ -1.02
SF3B3-201ENST00000302516 TEX13AQ9BXU3 409 aaPredicted RBP8.7□□□□□ -1.02
SF3B3-201ENST00000302516 TBCAO75347 108 aaKnown RBP8.7□□□□□ -1.02
SF3B3-201ENST00000302516 UBA5Q9GZZ9 404 aa8.7□□□□□ -1.02
SF3B3-201ENST00000302516 XRCC6P12956 609 aaKnown RBP eCLIP8.7□□□□□ -1.022e-16■□□□□ 8.9
SF3B3-201ENST00000302516 STAT6P42226 847 aa8.7□□□□□ -1.02
SF3B3-201ENST00000302516 PROSER2Q86WR7 435 aaPredicted RBP8.7□□□□□ -1.02
SF3B3-201ENST00000302516 RAD50Q92878 1312 aa8.7□□□□□ -1.02
SF3B3-201ENST00000302516 AKR1B10O60218 316 aa8.7□□□□□ -1.02
SF3B3-201ENST00000302516 NOP2P46087 812 aaKnown RBP8.7□□□□□ -1.02
SF3B3-201ENST00000302516 POTEDQ86YR6 584 aa8.7□□□□□ -1.02
SF3B3-201ENST00000302516 PSMA7O14818 248 aa8.7□□□□□ -1.02
SF3B3-201ENST00000302516 MCM10Q7L590 875 aa8.7□□□□□ -1.02
SF3B3-201ENST00000302516 FAM76AQ8TAV0 307 aa8.7□□□□□ -1.02
SF3B3-201ENST00000302516 MPHOSPH6Q99547 160 aaKnown RBP8.7□□□□□ -1.02
SF3B3-201ENST00000302516 NBPF7P0C2Y1 421 aaPredicted RBP8.69□□□□□ -1.02
SF3B3-201ENST00000302516 CAPN2P17655 700 aa8.69□□□□□ -1.02
SF3B3-201ENST00000302516 WDR66Q8TBY9 1149 aa8.69□□□□□ -1.02
SF3B3-201ENST00000302516 DISP3Q9P2K9 1392 aa8.69□□□□□ -1.02
SF3B3-201ENST00000302516 MYO5CQ9NQX4 1742 aa8.69□□□□□ -1.02
SF3B3-201ENST00000302516 TYRO3Q06418 890 aa8.69□□□□□ -1.02
SF3B3-201ENST00000302516 CCDC184Q52MB2 194 aa8.69□□□□□ -1.02
SF3B3-201ENST00000302516 ZNF444Q8N0Y2 327 aaPredicted RBP8.69□□□□□ -1.02
SF3B3-201ENST00000302516 FBF1Q8TES7 1133 aa8.69□□□□□ -1.02
SF3B3-201ENST00000302516 SMC6Q96SB8 1091 aa8.69□□□□□ -1.02
SF3B3-201ENST00000302516 ORC3Q9UBD5 711 aaPredicted RBP8.69□□□□□ -1.02
SF3B3-201ENST00000302516 USP16Q9Y5T5 823 aa8.69□□□□□ -1.02
SF3B3-201ENST00000302516 PRAG1Q86YV5 1406 aa8.69□□□□□ -1.02
SF3B3-201ENST00000302516 IRX3P78415 501 aaPredicted RBP8.69□□□□□ -1.02
SF3B3-201ENST00000302516 IFT74Q96LB3 600 aa8.69□□□□□ -1.02
SF3B3-201ENST00000302516 CFAP74Q9C0B2 1584 aa8.69□□□□□ -1.02
SF3B3-201ENST00000302516 TMOD3Q9NYL9 352 aa8.69□□□□□ -1.02
SF3B3-201ENST00000302516 NPHP3Q7Z494 1330 aa8.69□□□□□ -1.02
SF3B3-201ENST00000302516 SPDYE4A6NLX3 237 aa8.69□□□□□ -1.02
SF3B3-201ENST00000302516 USP48Q86UV5 1035 aa8.69□□□□□ -1.02
SF3B3-201ENST00000302516 NAP1L3Q99457 506 aaPredicted RBP8.69□□□□□ -1.02
SF3B3-201ENST00000302516 ZMYND15Q9H091 742 aa8.69□□□□□ -1.02
SF3B3-201ENST00000302516 RANBP6O60518 1105 aaKnown RBP8.69□□□□□ -1.02
SF3B3-201ENST00000302516 BAG3O95817 575 aa8.69□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 143.8 ms