RNA–Protein interactions for RNA: YLR360W

VPS38, Transcript of Part of a Vps34p phosphatidylinositol 3-kinase complex, yeast

Gene VPS38, Length 1,320 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
VPS38	YLR360W	RPN4	Q03465	531 aa		4.95	□□□□□ -1.62
VPS38	YLR360W	ENV7	Q12003	364 aa		4.95	□□□□□ -1.62
VPS38	YLR360W	PHR1	P05066	565 aa	Known RBP RIP-Chip data	4.94	□□□□□ -1.62	not detected
VPS38	YLR360W	MPH2	P0CD99	609 aa		4.94	□□□□□ -1.62
VPS38	YLR360W	PBP2	P38151	413 aa	Known RBP RIP-Chip data	4.94	□□□□□ -1.62	not detected
VPS38	YLR360W	YIL108W	P40483	696 aa	Known RBP	4.94	□□□□□ -1.62
VPS38	YLR360W	MNN10	P50108	393 aa	Known RBP	4.94	□□□□□ -1.62
VPS38	YLR360W	ERR1	P0CX10	437 aa		4.93	□□□□□ -1.62
VPS38	YLR360W	ERR2	P0CX11	437 aa		4.93	□□□□□ -1.62
VPS38	YLR360W	SED4	P25365	1065 aa		4.93	□□□□□ -1.62
VPS38	YLR360W	YCR015C	P25616	317 aa		4.93	□□□□□ -1.62
VPS38	YLR360W	URA1	P28272	314 aa	Predicted RBP	4.93	□□□□□ -1.62
VPS38	YLR360W	CTS1	P29029	562 aa		4.93	□□□□□ -1.62
VPS38	YLR360W	TIM23	P32897	222 aa		4.93	□□□□□ -1.62
VPS38	YLR360W	TYE7	P33122	291 aa	Predicted RBP	4.93	□□□□□ -1.62
VPS38	YLR360W	URM1	P40554	99 aa	Predicted RBP	4.93	□□□□□ -1.62
VPS38	YLR360W	NPC2	Q12408	173 aa		4.93	□□□□□ -1.62
VPS38	YLR360W	STE11	P23561	717 aa		4.92	□□□□□ -1.62
VPS38	YLR360W	ALG2	P43636	503 aa		4.92	□□□□□ -1.62
VPS38	YLR360W	NCS6	P53088	359 aa		4.92	□□□□□ -1.62
VPS38	YLR360W	PUS2	P53167	370 aa		4.92	□□□□□ -1.62
VPS38	YLR360W	HDA1	P53973	706 aa		4.92	□□□□□ -1.62
VPS38	YLR360W	YKR011C	Q02209	353 aa		4.92	□□□□□ -1.62
VPS38	YLR360W	PPM2	Q08282	695 aa		4.92	□□□□□ -1.62
VPS38	YLR360W	KCS1	Q12494	1050 aa		4.92	□□□□□ -1.62
VPS38	YLR360W	DAL7	P21826	554 aa		4.91	□□□□□ -1.62
VPS38	YLR360W	CAD1	P24813	409 aa	Known RBP	4.91	□□□□□ -1.62
VPS38	YLR360W	YTA7	P40340	1379 aa		4.91	□□□□□ -1.62
VPS38	YLR360W	NUP82	P40368	713 aa		4.91	□□□□□ -1.62
VPS38	YLR360W	GYP8	P43570	497 aa		4.91	□□□□□ -1.62
VPS38	YLR360W	JSN1	P47135	1091 aa	Known RBP RIP-Chip data	4.91	□□□□□ -1.62	not detected
VPS38	YLR360W	HSV2	P50079	448 aa	Predicted RBP	4.91	□□□□□ -1.62
VPS38	YLR360W	DAM1	P53267	343 aa		4.91	□□□□□ -1.62
VPS38	YLR360W	YGR283C	P53336	341 aa	Predicted RBP	4.91	□□□□□ -1.62
VPS38	YLR360W	UPC2	Q12151	913 aa		4.91	□□□□□ -1.62
VPS38	YLR360W	CYS3	P31373	394 aa	Known RBP	4.9	□□□□□ -1.63
VPS38	YLR360W	EMC3	P36039	253 aa		4.9	□□□□□ -1.63
VPS38	YLR360W	BUD6	P41697	788 aa		4.9	□□□□□ -1.63
VPS38	YLR360W	NOG2	P53742	486 aa	Known RBP	4.9	□□□□□ -1.63
VPS38	YLR360W	RAD53	P22216	821 aa		4.89	□□□□□ -1.63
VPS38	YLR360W	HCM1	P25364	564 aa		4.89	□□□□□ -1.63
VPS38	YLR360W	SAP190	P36123	1033 aa		4.89	□□□□□ -1.63
VPS38	YLR360W	GDH3	P39708	457 aa		4.89	□□□□□ -1.63
VPS38	YLR360W	OSW7	P43611	510 aa		4.89	□□□□□ -1.63
VPS38	YLR360W	PHO23	P50947	330 aa		4.89	□□□□□ -1.63
VPS38	YLR360W	TAD1	P53065	400 aa		4.89	□□□□□ -1.63
VPS38	YLR360W	YDR514C	Q04408	483 aa		4.89	□□□□□ -1.63
VPS38	YLR360W	CIT2	P08679	460 aa		4.88	□□□□□ -1.63
VPS38	YLR360W	YCL002C	P25565	263 aa		4.88	□□□□□ -1.63
VPS38	YLR360W	EXG2	P52911	562 aa		4.88	□□□□□ -1.63
VPS38	YLR360W	PRC1	P00729	532 aa		4.87	□□□□□ -1.63
VPS38	YLR360W	FBP1	P09201	348 aa		4.87	□□□□□ -1.63
VPS38	YLR360W	PHO8	P11491	566 aa		4.87	□□□□□ -1.63
VPS38	YLR360W	PFK1	P16861	987 aa	Known RBP	4.87	□□□□□ -1.63
VPS38	YLR360W	KAR4	P25583	335 aa		4.87	□□□□□ -1.63
VPS38	YLR360W	STE14	P32584	239 aa		4.87	□□□□□ -1.63
VPS38	YLR360W	SPC29	P33419	253 aa		4.87	□□□□□ -1.63
VPS38	YLR360W	SDP1	P40479	209 aa		4.87	□□□□□ -1.63
VPS38	YLR360W	LRS4	Q04087	347 aa	Known RBP	4.87	□□□□□ -1.63
VPS38	YLR360W	MET7	Q08645	548 aa		4.87	□□□□□ -1.63
VPS38	YLR360W	YLR125W	Q12138	136 aa		4.87	□□□□□ -1.63
VPS38	YLR360W	HAL9	Q12180	1030 aa		4.87	□□□□□ -1.63
VPS38	YLR360W	YOR022C	Q12204	715 aa		4.87	□□□□□ -1.63
VPS38	YLR360W	THI4	P32318	326 aa		4.86	□□□□□ -1.63
VPS38	YLR360W	DCG1	P32460	244 aa		4.86	□□□□□ -1.63
VPS38	YLR360W	FPR4	Q06205	392 aa	Predicted RBP	4.86	□□□□□ -1.63
VPS38	YLR360W	REH1	Q06709	432 aa		4.86	□□□□□ -1.63
VPS38	YLR360W	TUB2	P02557	457 aa	Known RBP	4.85	□□□□□ -1.63
VPS38	YLR360W	PMA1	P05030	918 aa	Known RBP	4.85	□□□□□ -1.63
VPS38	YLR360W	PER1	P25625	357 aa		4.85	□□□□□ -1.63
VPS38	YLR360W	CTF8	P38877	133 aa		4.85	□□□□□ -1.63
VPS38	YLR360W	SHR5	P41912	237 aa		4.85	□□□□□ -1.63
VPS38	YLR360W	DUS1	P53759	423 aa	Known RBP	4.85	□□□□□ -1.63
VPS38	YLR360W	GUP2	Q08929	609 aa		4.85	□□□□□ -1.63
VPS38	YLR360W	NTO1	Q12311	748 aa		4.85	□□□□□ -1.63
VPS38	YLR360W	SWM1	Q12379	170 aa		4.85	□□□□□ -1.63
VPS38	YLR360W	SEC21	P32074	935 aa	Known RBP	4.84	□□□□□ -1.63
VPS38	YLR360W	TRM2	P33753	639 aa		4.84	□□□□□ -1.63
VPS38	YLR360W	YHR078W	P38799	552 aa		4.84	□□□□□ -1.63
VPS38	YLR360W	ATP25	Q03153	612 aa		4.84	□□□□□ -1.63
VPS38	YLR360W	PEX19	Q07418	342 aa		4.84	□□□□□ -1.63
VPS38	YLR360W	PPG1	P32838	368 aa		4.83	□□□□□ -1.64
VPS38	YLR360W	MSS4	P38994	779 aa		4.83	□□□□□ -1.64
VPS38	YLR360W	DSS1	P39112	969 aa		4.83	□□□□□ -1.64
VPS38	YLR360W	RSC3	Q06639	885 aa		4.83	□□□□□ -1.64
VPS38	YLR360W	ENB1	Q08299	606 aa		4.83	□□□□□ -1.64
VPS38	YLR360W	DIF1	O13577	133 aa		4.82	□□□□□ -1.64
VPS38	YLR360W	MET6	P05694	767 aa	Known RBP	4.82	□□□□□ -1.64
VPS38	YLR360W	SET5	P38890	526 aa	Known RBP	4.82	□□□□□ -1.64
VPS38	YLR360W	PZF1	P39933	429 aa		4.82	□□□□□ -1.64
VPS38	YLR360W	RLP7	P40693	322 aa	Known RBP	4.82	□□□□□ -1.64
VPS38	YLR360W	SSY5	P47002	699 aa		4.82	□□□□□ -1.64
VPS38	YLR360W	ZDS1	P50111	915 aa	Known RBP	4.82	□□□□□ -1.64
VPS38	YLR360W	MAL11	P53048	616 aa		4.82	□□□□□ -1.64
VPS38	YLR360W	AIM39	Q08223	395 aa		4.82	□□□□□ -1.64
VPS38	YLR360W	LAS17	Q12446	633 aa		4.82	□□□□□ -1.64
VPS38	YLR360W	GSY1	P23337	708 aa		4.81	□□□□□ -1.64
VPS38	YLR360W	SAK1	P38990	1142 aa		4.81	□□□□□ -1.64
VPS38	YLR360W	VHR1	P40522	640 aa		4.81	□□□□□ -1.64
VPS38	YLR360W	TY4A-J	P47023	414 aa		4.81	□□□□□ -1.64

Retrieved 100 of 5,963 RNA–protein pairs in 617.8 ms