RNA–Protein interactions for RNA: YDR439W

LRS4, Transcript of Nucleolar protein that forms a complex with Csm1p, yeast

Gene LRS4, Length 1,044 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
LRS4	YDR439W	TIM23	P32897	222 aa		4.67	□□□□□ -1.66
LRS4	YDR439W	NUP82	P40368	713 aa		4.67	□□□□□ -1.66
LRS4	YDR439W	OSW7	P43611	510 aa		4.67	□□□□□ -1.66
LRS4	YDR439W	NAN1	Q02931	896 aa	Known RBP	4.67	□□□□□ -1.66
LRS4	YDR439W	CUE2	P36075	443 aa	Known RBP	4.66	□□□□□ -1.66
LRS4	YDR439W	GYP7	P48365	746 aa		4.66	□□□□□ -1.66
LRS4	YDR439W	YMR206W	Q03695	313 aa		4.66	□□□□□ -1.66
LRS4	YDR439W	ESC2	Q06340	456 aa		4.66	□□□□□ -1.66
LRS4	YDR439W	PPR1	P07272	904 aa	Predicted RBP	4.65	□□□□□ -1.67
LRS4	YDR439W	ALG7	P07286	448 aa		4.65	□□□□□ -1.67
LRS4	YDR439W	KRI1	P42846	591 aa	Known RBP	4.65	□□□□□ -1.67
LRS4	YDR439W	TIM54	P47045	478 aa		4.65	□□□□□ -1.67
LRS4	YDR439W	YJR142W	P47173	342 aa		4.65	□□□□□ -1.67
LRS4	YDR439W	RAI1	P53063	387 aa	Known RBP	4.65	□□□□□ -1.67
LRS4	YDR439W	ERR1	P0CX10	437 aa		4.64	□□□□□ -1.67
LRS4	YDR439W	ERR2	P0CX11	437 aa		4.64	□□□□□ -1.67
LRS4	YDR439W	MTH1	P35198	433 aa		4.64	□□□□□ -1.67
LRS4	YDR439W	YKR078W	P36158	585 aa	Known RBP	4.64	□□□□□ -1.67
LRS4	YDR439W	SNM1	P40993	198 aa		4.64	□□□□□ -1.67
LRS4	YDR439W	ERG5	P54781	538 aa		4.64	□□□□□ -1.67
LRS4	YDR439W	SLU7	Q02775	382 aa	Known RBP	4.64	□□□□□ -1.67
LRS4	YDR439W	LGE1	Q02796	332 aa	Known RBP	4.64	□□□□□ -1.67
LRS4	YDR439W	YPR196W	Q06595	470 aa		4.64	□□□□□ -1.67
LRS4	YDR439W	FAL1	Q12099	399 aa	Known RBP	4.64	□□□□□ -1.67
LRS4	YDR439W	YOR131C	Q12486	218 aa		4.64	□□□□□ -1.67
LRS4	YDR439W	GRX4	P32642	244 aa		4.63	□□□□□ -1.67
LRS4	YDR439W	MNN1	P39106	762 aa		4.63	□□□□□ -1.67
LRS4	YDR439W	RSP5	P39940	809 aa	Known RBP	4.63	□□□□□ -1.67
LRS4	YDR439W	MUK1	Q02866	612 aa		4.63	□□□□□ -1.67
LRS4	YDR439W	UBX5	Q06682	500 aa		4.63	□□□□□ -1.67
LRS4	YDR439W	FMP25	Q08023	583 aa		4.63	□□□□□ -1.67
LRS4	YDR439W	FLC1	Q08967	793 aa		4.63	□□□□□ -1.67
LRS4	YDR439W	PHO8	P11491	566 aa		4.62	□□□□□ -1.67
LRS4	YDR439W	AGP1	P25376	633 aa		4.62	□□□□□ -1.67
LRS4	YDR439W	RPL8B	P29453	256 aa	Known RBP	4.62	□□□□□ -1.67
LRS4	YDR439W	YBR184W	P38299	523 aa		4.62	□□□□□ -1.67
LRS4	YDR439W	YER158C	P40095	573 aa		4.62	□□□□□ -1.67
LRS4	YDR439W	PFD1	P46988	109 aa		4.62	□□□□□ -1.67
LRS4	YDR439W	GND2	P53319	492 aa		4.62	□□□□□ -1.67
LRS4	YDR439W	POB3	Q04636	552 aa	Known RBP	4.62	□□□□□ -1.67
LRS4	YDR439W	DUS3	Q06053	668 aa	Known RBP	4.62	□□□□□ -1.67
LRS4	YDR439W	TRM13	Q12383	476 aa		4.62	□□□□□ -1.67
LRS4	YDR439W	MET6	P05694	767 aa	Known RBP	4.61	□□□□□ -1.67
LRS4	YDR439W	TSR4	P25040	408 aa		4.61	□□□□□ -1.67
LRS4	YDR439W	ABD1	P32783	436 aa	Predicted RBP	4.61	□□□□□ -1.67
LRS4	YDR439W	SBA1	P28707	216 aa	Known RBP	4.6	□□□□□ -1.67
LRS4	YDR439W	YBR238C	P38330	731 aa	Known RBP	4.6	□□□□□ -1.67
LRS4	YDR439W	TSL1	P38427	1098 aa	Known RBP	4.6	□□□□□ -1.67
LRS4	YDR439W	UBP12	P39538	1254 aa		4.6	□□□□□ -1.67
LRS4	YDR439W	MBP1	P39678	833 aa		4.6	□□□□□ -1.67
LRS4	YDR439W	CHZ1	P40019	153 aa	Predicted RBP	4.6	□□□□□ -1.67
LRS4	YDR439W	RTA1	P53047	317 aa		4.6	□□□□□ -1.67
LRS4	YDR439W	SHE9	Q04172	456 aa		4.6	□□□□□ -1.67
LRS4	YDR439W	PEX19	Q07418	342 aa		4.6	□□□□□ -1.67
LRS4	YDR439W	CIT1	P00890	479 aa		4.59	□□□□□ -1.67
LRS4	YDR439W	CAN1	P04817	590 aa		4.59	□□□□□ -1.67
LRS4	YDR439W	NOT3	P06102	836 aa	Known RBP	4.59	□□□□□ -1.67
LRS4	YDR439W	CDC48	P25694	835 aa	Known RBP	4.59	□□□□□ -1.67
LRS4	YDR439W	VBA5	P36172	582 aa		4.59	□□□□□ -1.67
LRS4	YDR439W	GUS1	P46655	708 aa	Known RBP RIP-Chip data	4.59	□□□□□ -1.67	not detected
LRS4	YDR439W	YJR008W	P47085	338 aa		4.59	□□□□□ -1.67
LRS4	YDR439W	YKE2	P52553	114 aa		4.59	□□□□□ -1.67
LRS4	YDR439W	HBT1	Q07653	1046 aa	Known RBP	4.59	□□□□□ -1.67
LRS4	YDR439W	NDJ1	Q12366	352 aa		4.59	□□□□□ -1.67
LRS4	YDR439W	FBP1	P09201	348 aa		4.58	□□□□□ -1.68
LRS4	YDR439W	SEC21	P32074	935 aa	Known RBP	4.58	□□□□□ -1.68
LRS4	YDR439W	SDS3	P40505	327 aa		4.58	□□□□□ -1.68
LRS4	YDR439W	MAL11	P53048	616 aa		4.58	□□□□□ -1.68
LRS4	YDR439W	TAF8	Q03750	510 aa		4.58	□□□□□ -1.68
LRS4	YDR439W	YLR125W	Q12138	136 aa		4.58	□□□□□ -1.68
LRS4	YDR439W	SSB1	P11484	613 aa	Known RBP	4.57	□□□□□ -1.68
LRS4	YDR439W	STE13	P33894	931 aa		4.57	□□□□□ -1.68
LRS4	YDR439W	TOM20	P35180	183 aa		4.57	□□□□□ -1.68
LRS4	YDR439W	CTF13	P35203	478 aa		4.57	□□□□□ -1.68
LRS4	YDR439W	BET3	P36149	193 aa		4.57	□□□□□ -1.68
LRS4	YDR439W	SSB2	P40150	613 aa	Known RBP	4.57	□□□□□ -1.68
LRS4	YDR439W	YGR125W	P53273	1036 aa		4.57	□□□□□ -1.68
LRS4	YDR439W	DNM1	P54861	757 aa		4.57	□□□□□ -1.68
LRS4	YDR439W	VPS30	Q02948	557 aa		4.57	□□□□□ -1.68
LRS4	YDR439W	SSL1	Q04673	461 aa	Predicted RBP	4.57	□□□□□ -1.68
LRS4	YDR439W	FRE5	Q08908	694 aa		4.57	□□□□□ -1.68
LRS4	YDR439W	YGR161W-C	Q3E744	92 aa		4.57	□□□□□ -1.68
LRS4	YDR439W	TOP1	P04786	769 aa		4.56	□□□□□ -1.68
LRS4	YDR439W	MET3	P08536	511 aa		4.56	□□□□□ -1.68
LRS4	YDR439W	GAL11	P19659	1081 aa		4.56	□□□□□ -1.68
LRS4	YDR439W	THI4	P32318	326 aa		4.56	□□□□□ -1.68
LRS4	YDR439W	MRP8	P35719	219 aa		4.56	□□□□□ -1.68
LRS4	YDR439W	YHL017W	P38745	532 aa		4.56	□□□□□ -1.68
LRS4	YDR439W	SDP1	P40479	209 aa		4.56	□□□□□ -1.68
LRS4	YDR439W	IRR1	P40541	1150 aa		4.56	□□□□□ -1.68
LRS4	YDR439W	DAS1	P47005	663 aa		4.56	□□□□□ -1.68
LRS4	YDR439W	UTP8	P53276	713 aa	Known RBP	4.56	□□□□□ -1.68
LRS4	YDR439W	NTG2	Q08214	380 aa		4.56	□□□□□ -1.68
LRS4	YDR439W	MSL5	Q12186	476 aa	Known RBP RIP-Chip data	4.56	□□□□□ -1.68	not detected
LRS4	YDR439W	TRM11	Q12463	433 aa		4.56	□□□□□ -1.68
LRS4	YDR439W	HSP60	P19882	572 aa	Known RBP	4.55	□□□□□ -1.68
LRS4	YDR439W	MSH2	P25847	964 aa		4.55	□□□□□ -1.68
LRS4	YDR439W	PPS1	P38148	807 aa		4.55	□□□□□ -1.68
LRS4	YDR439W	PBY1	P38254	753 aa		4.55	□□□□□ -1.68
LRS4	YDR439W	ZDS1	P50111	915 aa	Known RBP	4.55	□□□□□ -1.68

Retrieved 100 of 5,963 RNA–protein pairs in 27.2 ms